View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17550_low_31 (Length: 241)
Name: NF17550_low_31
Description: NF17550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17550_low_31 |
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Alignment Details
Target: chr3 (Bit Score: 188; Significance: 1e-102; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 20 - 231
Target Start/End: Complemental strand, 9788738 - 9788527
Alignment:
| Q |
20 |
tatgtgtgtgtgtatatatattaacatgtttgctatagggatagttgtggctctcatttggacagaattttggttggaatttgtctcctggtttgtggtt |
119 |
Q |
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||||||||| | |||||| |||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9788738 |
tatgtgtgtatatatatacattaacatgtttgctatatgcatagttgtggctctcatttggacagaattttggttggaatttgtctcctggtttgtggtt |
9788639 |
T |
|
| Q |
120 |
agagacttgactttgctttctgtgtatggtagttgtagcagtgtctgagttatcctaagggatttagttagcttgcaggactgtcattgtgtttgttttg |
219 |
Q |
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|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9788638 |
agagacttgactttgctttctgcgtatggtagttgtagcagtgtctgagttatcctaagggatttagttagcttgcaggactgtcattgtgtttgttttg |
9788539 |
T |
|
| Q |
220 |
gcttagcctttg |
231 |
Q |
| |
|
|||||||||||| |
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| T |
9788538 |
gcttagcctttg |
9788527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 24 - 141
Target Start/End: Original strand, 3587663 - 3587780
Alignment:
| Q |
24 |
tgtgtgtgtatatatattaacatgtttgctatagggatagttgtggctctcatttggacagaattttggttggaatttgtctcctggtttgtggttagag |
123 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | ||||||||| ||||||||| |
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| T |
3587663 |
tgtgtgtgtatatatattaatatgtttgctatagggatagttgtggctctcatttgaacagaattttggttggaatttatttcctggtttatggttagag |
3587762 |
T |
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| Q |
124 |
acttgactttgctttctg |
141 |
Q |
| |
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|||||||||||||||||| |
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| T |
3587763 |
acttgactttgctttctg |
3587780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 159 - 231
Target Start/End: Original strand, 3589193 - 3589265
Alignment:
| Q |
159 |
agtgtctgagttatcctaagggatttagttagcttgcaggactgtcattgtgtttgttttggcttagcctttg |
231 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3589193 |
agtgtctgagttatcctaagggatttagttagcttgcaggactgtcattgtgtttgttttggcttagcctttg |
3589265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 18 - 231
Target Start/End: Original strand, 44505460 - 44505673
Alignment:
| Q |
18 |
cttatgtgtgtgtgtatatatattaacatgtttgctatagggatagttgtggctctcatttggacagaattttggttggaatttgtctcctggtttgtgg |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| |
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| T |
44505460 |
cttatgtgtgtgtgtatatatattaacatgtttgctatatggatagttgtggctctcatctggacagaattttggttagaatttgtctcctggtttgtgg |
44505559 |
T |
|
| Q |
118 |
ttagagacttgactttgctttctgtgtatggtagttgtagcagtgtctgagttatcctaagggatttagttagcttgcaggactgtcattgtgtttgttt |
217 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| |
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| T |
44505560 |
ttagagacttgactttgctttctgcgtatggtagttgtagcagtgtctgagttatcctaagggatttagttagcttgcagaactaccattgtgtttgttt |
44505659 |
T |
|
| Q |
218 |
tggcttagcctttg |
231 |
Q |
| |
|
|||||||||||||| |
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|
| T |
44505660 |
tggcttagcctttg |
44505673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 182; Significance: 2e-98; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 18 - 231
Target Start/End: Complemental strand, 10013607 - 10013394
Alignment:
| Q |
18 |
cttatgtgtgtgtgtatatatattaacatgtttgctatagggatagttgtggctctcatttggacagaattttggttggaatttgtctcctggtttgtgg |
117 |
Q |
| |
|
||||||| ||||| |||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
10013607 |
cttatgtatgtgtatatatatattaacatgtttgctattgggataattgtggctctcatttggacagaattttggttggaatttgtctcctggtttgtag |
10013508 |
T |
|
| Q |
118 |
ttagagacttgactttgctttctgtgtatggtagttgtagcagtgtctgagttatcctaagggatttagttagcttgcaggactgtcattgtgtttgttt |
217 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
10013507 |
ttagagacttgactttgctttctgcgtatggtagttgtagcagtgtctgagttatcctaatggattcagttagcttgcaggactgtcattgtgtttgttt |
10013408 |
T |
|
| Q |
218 |
tggcttagcctttg |
231 |
Q |
| |
|
|||||||||||||| |
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|
| T |
10013407 |
tggcttagcctttg |
10013394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 18 - 231
Target Start/End: Complemental strand, 10020748 - 10020535
Alignment:
| Q |
18 |
cttatgtgtgtgtgtatatatattaacatgtttgctatagggatagttgtggctctcatttggacagaattttggttggaatttgtctcctggtttgtgg |
117 |
Q |
| |
|
||||||| ||||| |||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
10020748 |
cttatgtatgtgtatatatatattaacatgtttgctattgggataattgtggctctcatttggacagaattttggttggaatttgtctcctggtttgtag |
10020649 |
T |
|
| Q |
118 |
ttagagacttgactttgctttctgtgtatggtagttgtagcagtgtctgagttatcctaagggatttagttagcttgcaggactgtcattgtgtttgttt |
217 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| |
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| T |
10020648 |
ttagagacttgactttgctttctgcgtatggtagttgtagcagtgtctgagttatcctaatggattcagttagcttgcaggactgtcattgtgtttgttt |
10020549 |
T |
|
| Q |
218 |
tggcttagcctttg |
231 |
Q |
| |
|
|||||||||||||| |
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|
| T |
10020548 |
tggcttagcctttg |
10020535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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