View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17550_low_33 (Length: 234)
Name: NF17550_low_33
Description: NF17550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17550_low_33 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 37736195 - 37736419
Alignment:
| Q |
1 |
tggttctaaataatagaaacttgt---tatttttctttcattcattcaaaggtatgaggaaattgcttcgatgaagagactttccttcctagaaactaaa |
97 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37736195 |
tggttctaaataatagaaacttgttgttatttttctttcattcattcaaaggtatgaggaaattgcttcgatgaagagactttccttcctagaaactaag |
37736294 |
T |
|
| Q |
98 |
tcatgtgcctcactacctatcaacaaccatgtgaattagtaagaaagtaacataaaccttccaatcttaattaccatgccatgtttatttcatgtgtaac |
197 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37736295 |
tcatgtgcctcactacctatcaacaaccatgtgaattagtaagaaagtaacataaaccttccaatcttaattaccatgccatgtttatttcatgtgtaac |
37736394 |
T |
|
| Q |
198 |
gtttttgaaatcacaccaaattttt |
222 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
37736395 |
gtttttgaaatcacaccaaattttt |
37736419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University