View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17550_low_34 (Length: 233)
Name: NF17550_low_34
Description: NF17550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17550_low_34 |
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Alignment Details
Target: chr2 (Bit Score: 93; Significance: 2e-45; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 139
Target Start/End: Complemental strand, 44488698 - 44488557
Alignment:
| Q |
1 |
cacctatagcattagaaaggccaggacaatatttaactacaccatgaactgctaacaatacacaannnnnnnnngtttt---gaaggaatacactatttt |
97 |
Q |
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| T |
44488698 |
cacctatagcattagaaaggccaggacaatatttaactacaccatgaactgctaacaatacactattcttttttttttttttgaaggaatacactatttt |
44488599 |
T |
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| Q |
98 |
ttaatattttattgtaacactttcaaaaaagtagtttattac |
139 |
Q |
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| T |
44488598 |
ttaatattttattgtaacactttcaaaaaagtagtttattac |
44488557 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 168 - 215
Target Start/End: Complemental strand, 44488551 - 44488503
Alignment:
| Q |
168 |
tattgtttgtttttgttttgaaaacaatatacta-caattgatgtcatt |
215 |
Q |
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| T |
44488551 |
tattgtttgtttttgttttgaaaacaatatactaccaattgatgtcatt |
44488503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 8 - 57
Target Start/End: Complemental strand, 44467342 - 44467292
Alignment:
| Q |
8 |
agcattagaaaggccagga-caatatttaactacaccatgaactgctaaca |
57 |
Q |
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| T |
44467342 |
agcattagaaaggccaggagcaatatttaactaaaccatgaaatgctaaca |
44467292 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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