View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17550_low_37 (Length: 211)
Name: NF17550_low_37
Description: NF17550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17550_low_37 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 20054212 - 20054002
Alignment:
| Q |
1 |
cataacttcaaacaaatagaataaaaaactttatatgattaaggcacttactgcattcttttggatgacacaaacacttcaagccagcattacagtttcc |
100 |
Q |
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| T |
20054212 |
cataacttcaaacaaatagaataaaaaactttatatgattaaggcacttactgcattcttttggatgacacaaacacttcaagccagcattacagtttcc |
20054113 |
T |
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| Q |
101 |
attaggattttcacaccctttgcaaaattctggtgcatgagttggaacgttaaaagttatccttaattgagaagatacagaggaattcgaagtcaagaaa |
200 |
Q |
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| T |
20054112 |
attaggattttcacagcctttgcaaaattctggtgcatgagttggaacgttaacagttatccttaattgagaagatatagaagaatttgaagtcaagaaa |
20054013 |
T |
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| Q |
201 |
ggtggttgagt |
211 |
Q |
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||||||||||| |
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| T |
20054012 |
ggtggttgagt |
20054002 |
T |
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Target: chr4; HSP #2
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 47 - 211
Target Start/End: Original strand, 19250023 - 19250187
Alignment:
| Q |
47 |
cttactgcattcttttggatgacacaaacacttcaagccagcattacagtttccattaggattttcacaccctttgcaaaattctggtgcatgagttgga |
146 |
Q |
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|||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| |
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| T |
19250023 |
cttactgcattcttttaaatgacacaaacacttcaagccggcattacagtttccattaggattttcacacccttcgcaaaattctggtacatgagttgga |
19250122 |
T |
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| Q |
147 |
acgttaaaagttatccttaattgagaagatacagaggaattcgaagtcaagaaaggtggttgagt |
211 |
Q |
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| T |
19250123 |
acgttaacagttatccttatttgagaagatatagaagaatttgaagtcaagaaaggtggttgagt |
19250187 |
T |
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