View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17550_low_4 (Length: 531)
Name: NF17550_low_4
Description: NF17550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17550_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 17 - 237
Target Start/End: Complemental strand, 31979605 - 31979386
Alignment:
| Q |
17 |
cattatccttttctgttatgtttgttttatgggtctttattaattttaggttttggggtataattagtggttagtactatgagaaacttgttggaaatag |
116 |
Q |
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| T |
31979605 |
cattatccttttctgttatgtttgttttatgggtctttattaattttaggttttggggtataattagtggttagtactatgagaaacttgttggaaatag |
31979506 |
T |
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| Q |
117 |
atagggttt--tttctctctcttttctgttatggattatgatgaaaggaatcttattagggtttaattttgttctttaagtgttgaactgttcggttcaa |
214 |
Q |
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| T |
31979505 |
agagggttttctctctctctcttttctgttatggattatgatgaaaggaatc---ttagggtttaattttgttctttaagtgttgaactgttcggttcaa |
31979409 |
T |
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| Q |
215 |
atcttatgctgtatgttaccaga |
237 |
Q |
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| T |
31979408 |
atcttatgctgtatgttaccaga |
31979386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 180; E-Value: 6e-97
Query Start/End: Original strand, 313 - 531
Target Start/End: Complemental strand, 31979311 - 31979084
Alignment:
| Q |
313 |
acttccaccacgttaagttagttatgttaactgatgcatttaaacacaagaatttttatctctagtattcattatgaaaaactttgttggtaatggtaaa |
412 |
Q |
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| T |
31979311 |
acttccaccacgttaagttagttatgttaactgatgcatttaaacacaagaatttttatctctagtattcattatgagaaactttgttggtaatggtaaa |
31979212 |
T |
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| Q |
413 |
atggtaaataactttttgtgtgaccattttgttggtagttaaaagaaattttgcatttattacatg---------tgatttggaatcgtactatagtgtc |
503 |
Q |
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| T |
31979211 |
gaggtaaataactttttgtgtgaccattttgttggtagttaaaagaaattttgcatttactacatgtactccatttgatttggaatcgtactatagtgtc |
31979112 |
T |
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| Q |
504 |
tgtcaattattctcatttcacatgaacc |
531 |
Q |
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| T |
31979111 |
tgtcaattattctcatttcacatgaacc |
31979084 |
T |
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