View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17550_low_8 (Length: 483)
Name: NF17550_low_8
Description: NF17550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17550_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 290; Significance: 1e-162; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 8 - 468
Target Start/End: Complemental strand, 43736837 - 43736383
Alignment:
| Q |
8 |
tgaaaattctatttcttatgagtggttcttttgtttgtgtttgatgcttgtaactgaattataagaaaataatgctataaggtggcaattacacagtttt |
107 |
Q |
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| T |
43736837 |
tgaaaattctatttcttttgattggtttttgtgtttgtgtttgatgcttgtaactgaattataagaaaataatgctataagttggcaatttcacagtttt |
43736738 |
T |
|
| Q |
108 |
ctgtctcaaatatataacttatataataagtagagactagtaacttaaattgcaagatgcaaccatagtgctcaaatatattttattcatggatggaact |
207 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
43736737 |
ctgtctcaaatatataac--gtataataagtagagactagtaacttaaattgcaagatgcaaccatggtgctcaaatatattttattcatggatggaact |
43736640 |
T |
|
| Q |
208 |
gttataccctgaatggcagaaccnnnnnnnnnnnnnnnnnngaaataccaagtactaaccaaattgagttcttctctaattttggtttggtagcaaacag |
307 |
Q |
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|||| ||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
43736639 |
gttacaccttgaatggcagaacc-aaaaaaagtaaaaaaaagaaataccaagtactaaccaaattgagttcttctctaat-----tttggtagcaaacag |
43736546 |
T |
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| Q |
308 |
ttttagatttaattaattacaatat--tgtgaccagaccagaccagcatgacatgactattattgagtgaacaatttgttgaggattggattctgcacct |
405 |
Q |
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||||||||||||||||||||| | | |||||||||||||||||||||||||||||||||| ||| |||||||||||| |||||||||||||||||| |
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| T |
43736545 |
ttttagatttaattaattacattgtgaccagaccagaccagaccagcatgacatgactattattaagttaacaatttgttgtggattggattctgcacct |
43736446 |
T |
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| Q |
406 |
aagaggcctctttttcatgatgaacgcgactcgctcgtatagttaaccgttcctccttctctg |
468 |
Q |
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| T |
43736445 |
aagaggcctctttttcatgatgaacgcgactcgctcgtatagttaaccgttcctccttctctg |
43736383 |
T |
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