View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17550_low_9 (Length: 474)
Name: NF17550_low_9
Description: NF17550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17550_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 71 - 464
Target Start/End: Original strand, 6684418 - 6684814
Alignment:
| Q |
71 |
cattggaggtaattaactttacttgagatgtatctgctgcactaatggtaaacatctcttctaactgaaattcaaattttaatttatcacat--tataga |
168 |
Q |
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| T |
6684418 |
cattggaggtaattaactttacttgagatgtatctgc---actaatggtaaacatctcttctaactgaaattcaaattttaatttatcacatattataga |
6684514 |
T |
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| Q |
169 |
agtctaatattttgtgctaaacccaatgttagcttcatttaaatatttcttatctacttaatgtggaactcgcaagggttgtcttatctctcacaagtaa |
268 |
Q |
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| T |
6684515 |
agtctaatattttctgctaaacccaacgttagcttcatttaaatatttattatctacttaatgtggaactcacaagggttgtctaatctctcacaagtaa |
6684614 |
T |
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| Q |
269 |
taataaataa----ataaaatgaaaactcctaatatgtgatgttagagataaggatagtaggatacttctgcgatggggattggctgatttagtttatgt |
364 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6684615 |
taataaataagtatataaaatgaaaactcctaatatgtgatgttagagataaggatagtaggatacttctgcgatggggattggctgatttagtttatgt |
6684714 |
T |
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| Q |
365 |
tgtagaaactgcaaagacaaacgtaaagaaatgtccttttctttttccctttttattgtttatttggtttatatattctatcaaaaagaccacgagtatt |
464 |
Q |
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||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6684715 |
tgtggaaactgcaaagacaaacgtaaagaaatgtcctttcctttttccctttttattgtttatttggtttatatattctatcaaaaagaccacgagtatt |
6684814 |
T |
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