View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17551_high_4 (Length: 334)

Name: NF17551_high_4
Description: NF17551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17551_high_4
NF17551_high_4
[»] chr2 (10 HSPs)
chr2 (112-319)||(5550453-5550669)
chr2 (10-80)||(5550403-5550473)
chr2 (190-263)||(15612946-15613019)
chr2 (216-268)||(10065465-10065517)
chr2 (202-267)||(9842205-9842270)
chr2 (201-266)||(24393239-24393304)
chr2 (201-266)||(37320519-37320584)
chr2 (196-261)||(40967368-40967433)
chr2 (214-258)||(22359007-22359051)
chr2 (189-257)||(25561987-25562055)
[»] chr6 (5 HSPs)
chr6 (189-266)||(15291680-15291757)
chr6 (216-267)||(3808135-3808186)
chr6 (202-261)||(10497155-10497214)
chr6 (202-262)||(14679123-14679183)
chr6 (197-261)||(30579858-30579922)
[»] chr3 (10 HSPs)
chr3 (201-266)||(53681879-53681944)
chr3 (202-266)||(17588356-17588420)
chr3 (197-264)||(22486679-22486746)
chr3 (201-267)||(25505703-25505769)
chr3 (205-266)||(8127457-8127518)
chr3 (201-267)||(21914073-21914139)
chr3 (216-266)||(41291718-41291768)
chr3 (201-266)||(5702180-5702244)
chr3 (201-241)||(30200845-30200885)
chr3 (214-266)||(51882215-51882267)
[»] chr5 (7 HSPs)
chr5 (202-262)||(11647195-11647255)
chr5 (191-260)||(29560882-29560951)
chr5 (189-247)||(18391613-18391671)
chr5 (201-266)||(11637574-11637639)
chr5 (189-266)||(11844428-11844505)
chr5 (202-255)||(17145351-17145404)
chr5 (213-261)||(14124300-14124348)
[»] chr8 (4 HSPs)
chr8 (203-261)||(24799173-24799231)
chr8 (189-266)||(34420852-34420929)
chr8 (200-237)||(10152479-10152516)
chr8 (216-268)||(31888018-31888070)
[»] chr4 (7 HSPs)
chr4 (200-261)||(6520070-6520131)
chr4 (202-247)||(11364942-11364987)
chr4 (202-266)||(51002281-51002345)
chr4 (202-261)||(31352111-31352170)
chr4 (201-266)||(10303513-10303578)
chr4 (189-254)||(30380536-30380601)
chr4 (189-266)||(33900714-33900791)
[»] chr1 (8 HSPs)
chr1 (217-266)||(6809817-6809866)
chr1 (201-268)||(17221522-17221589)
chr1 (217-263)||(6645208-6645254)
chr1 (216-266)||(52267758-52267808)
chr1 (201-266)||(10132446-10132511)
chr1 (201-266)||(18056718-18056783)
chr1 (200-261)||(39387792-39387853)
chr1 (201-265)||(14520939-14521003)
[»] scaffold0083 (1 HSPs)
scaffold0083 (192-266)||(45937-46011)
[»] chr7 (8 HSPs)
chr7 (216-266)||(27263335-27263385)
chr7 (216-266)||(27270229-27270279)
chr7 (217-271)||(35763694-35763748)
chr7 (201-267)||(38553811-38553877)
chr7 (201-266)||(7872750-7872815)
chr7 (205-238)||(15492294-15492327)
chr7 (205-266)||(47342671-47342732)
chr7 (189-261)||(32513159-32513231)
[»] scaffold0238 (1 HSPs)
scaffold0238 (216-265)||(25384-25433)


Alignment Details
Target: chr2 (Bit Score: 126; Significance: 6e-65; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 112 - 319
Target Start/End: Original strand, 5550453 - 5550669
Alignment:
Q  112 cccaacaccttcacttatatacttcaactttattagtactatttgatttcggttttacacgagtaatannnnnnnnngt---------ggtgttcgaagt 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          |         ||||||||||||    
T  5550453 cccaacaccttcacttatatacttcaactttattagtactatttgatttcggttttacacgagtaatatatatatatatattttttttggtgttcgaagt 5550552  T
Q  203 tcgaacctcaaatcttgcatattttattcattgtccttacaaacttagttaagttcacggggacttacacgtataatattaacaacacaatcattggttt 302  Q
    ||||| || |||| ||| |||| |||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  5550553 tcgaatcttaaattttgtatatattattcattgtccttacaaactgagttaagttcacggggacttacacgtgtaatattaacaacacaatcattggttt 5550652  T
Q  303 tatcttaataacatatt 319  Q
    |||||||||||||||||    
T  5550653 tatcttaataacatatt 5550669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 10 - 80
Target Start/End: Original strand, 5550403 - 5550473
Alignment:
Q  10 aagaaaatattaatacaacaattaacatgttagcatttgttaactttggtcccaacaccttcacttatata 80  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5550403 aagaaaatattaatacaacaattaacatgttagcatttgttaactttggtcccaacaccttcacttatata 5550473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 190 - 263
Target Start/End: Complemental strand, 15613019 - 15612946
Alignment:
Q  190 tggtgttcgaagttcgaacctcaaatcttgcatattttattcattgtccttacaaacttagttaagttcacggg 263  Q
    |||||| |||||||| |||||| || ||| | ||| |||| |||||||||||||||||||||||| ||||||||    
T  15613019 tggtgtccgaagttcaaacctcgaaccttacgtatattatgcattgtccttacaaacttagttaaattcacggg 15612946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 216 - 268
Target Start/End: Complemental strand, 10065517 - 10065465
Alignment:
Q  216 cttgcatattttattcattgtccttacaaacttagttaagttcacggggactt 268  Q
    ||||||||| |||| |||||||||||| ||||||| |||||||||||||||||    
T  10065517 cttgcatatattatgcattgtccttaccaacttagctaagttcacggggactt 10065465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 267
Target Start/End: Original strand, 9842205 - 9842270
Alignment:
Q  202 ttcgaacctcaaatcttgcatattttattcattgtccttacaaacttagttaagttcacggggact 267  Q
    |||||||| |||| |||||||||||||| |||||||| ||| |||| || |||| ||||| |||||    
T  9842205 ttcgaaccccaaaccttgcatattttatgcattgtccctaccaactgagctaagctcacgaggact 9842270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 266
Target Start/End: Complemental strand, 24393304 - 24393239
Alignment:
Q  201 gttcgaacctcaaatcttgcatattttattcattgtccttacaaacttagttaagttcacggggac 266  Q
    |||||||||||| | ||||||||| |||| |||||||||||  |||| || |||| ||||||||||    
T  24393304 gttcgaacctcagaccttgcatatattatgcattgtccttaacaactgagctaagctcacggggac 24393239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 266
Target Start/End: Original strand, 37320519 - 37320584
Alignment:
Q  201 gttcgaacctcaaatcttgcatattttattcattgtccttacaaacttagttaagttcacggggac 266  Q
    ||||||||||| || ||||||||| |||| ||||||| |||| |||| ||||||| ||||| ||||    
T  37320519 gttcgaacctcgaaccttgcatatattatgcattgtctttaccaactgagttaagctcacgtggac 37320584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 196 - 261
Target Start/End: Original strand, 40967368 - 40967433
Alignment:
Q  196 tcgaagttcgaacctcaaatcttgcatattttattcattgtccttacaaacttagttaagttcacg 261  Q
    |||| ||| |||||||||| ||||||||| |||| |||||||||||  |||| ||||||| |||||    
T  40967368 tcgaggtttgaacctcaaaccttgcatatattatgcattgtccttatcaactgagttaagctcacg 40967433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 214 - 258
Target Start/End: Complemental strand, 22359051 - 22359007
Alignment:
Q  214 atcttgcatattttattcattgtccttacaaacttagttaagttc 258  Q
    ||||||||||| |||| |||||||||||| |||| ||||||||||    
T  22359051 atcttgcatatattatgcattgtccttaccaactgagttaagttc 22359007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 189 - 257
Target Start/End: Original strand, 25561987 - 25562055
Alignment:
Q  189 gtggtgttcgaagttcgaacctcaaatcttgcatattttattcattgtccttacaaacttagttaagtt 257  Q
    |||||| ||| |||| ||||| || |||||||||||||||| || ||||||||| |||| || ||||||    
T  25561987 gtggtggtcggagtttgaaccccagatcttgcatattttatgcactgtccttaccaactgagctaagtt 25562055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 189 - 266
Target Start/End: Original strand, 15291680 - 15291757
Alignment:
Q  189 gtggtgttcgaagttcgaacctcaaatcttgcatattttattcattgtccttacaaacttagttaagttcacggggac 266  Q
    ||||||| |||||||||||||||||| ||||||||| ||||||||||||||||| |||| ||||||| ||||| ||||    
T  15291680 gtggtgtccgaagttcgaacctcaaaccttgcatatattattcattgtccttaccaactaagttaagctcacgaggac 15291757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 216 - 267
Target Start/End: Original strand, 3808135 - 3808186
Alignment:
Q  216 cttgcatattttattcattgtccttacaaacttagttaagttcacggggact 267  Q
    ||||||||| |||| |||||||||||| |||| |||||||||||||||||||    
T  3808135 cttgcatatattatgcattgtccttactaactgagttaagttcacggggact 3808186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 202 - 261
Target Start/End: Original strand, 10497155 - 10497214
Alignment:
Q  202 ttcgaacctcaaatcttgcatattttattcattgtccttacaaacttagttaagttcacg 261  Q
    |||||||| |||| ||| ||||| |||| ||||||||||||||||| |||||||||||||    
T  10497155 ttcgaaccgcaaaccttacatatattatgcattgtccttacaaactgagttaagttcacg 10497214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 202 - 262
Target Start/End: Complemental strand, 14679183 - 14679123
Alignment:
Q  202 ttcgaacctcaaatcttgcatattttattcattgtccttacaaacttagttaagttcacgg 262  Q
    |||||| | |||| ||||||||| |||| |||||||||||| |||  ||||||||||||||    
T  14679183 ttcgaaacccaaaccttgcatatattatgcattgtccttaccaaccgagttaagttcacgg 14679123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 197 - 261
Target Start/End: Complemental strand, 30579922 - 30579858
Alignment:
Q  197 cgaagttcgaacctcaaatcttgcatattttattcattgtccttacaaacttagttaagttcacg 261  Q
    ||||||| ||||| |||| |||||||||||||| ||||||||  || |||| || ||||||||||    
T  30579922 cgaagtttgaaccccaaaccttgcatattttatgcattgtcccaaccaactgagctaagttcacg 30579858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 201 - 266
Target Start/End: Original strand, 53681879 - 53681944
Alignment:
Q  201 gttcgaacctcaaatcttgcatattttattcattgtccttacaaacttagttaagttcacggggac 266  Q
    |||||||||||||||||||||||| |||| |||||| ||||| |||| || |||| ||||||||||    
T  53681879 gttcgaacctcaaatcttgcatatattatgcattgttcttaccaactgaggtaagctcacggggac 53681944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 202 - 266
Target Start/End: Complemental strand, 17588420 - 17588356
Alignment:
Q  202 ttcgaacctcaaatcttgcatattttattcattgtccttacaaacttagttaagttcacggggac 266  Q
    |||||||| || ||||||||||| |||| |||||||||||| |||| ||||||| ||||||||||    
T  17588420 ttcgaaccccagatcttgcatatattatgcattgtccttaccaactgagttaagctcacggggac 17588356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 197 - 264
Target Start/End: Complemental strand, 22486746 - 22486679
Alignment:
Q  197 cgaagttcgaacctcaaatcttgcatattttattcattgtccttacaaacttagttaagttcacgggg 264  Q
    |||| |||||||| |||||||||||||| |||| |||||| ||||| |||| ||||||| ||||||||    
T  22486746 cgaaattcgaaccccaaatcttgcatatattatgcattgttcttaccaactgagttaagctcacgggg 22486679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 201 - 267
Target Start/End: Original strand, 25505703 - 25505769
Alignment:
Q  201 gttcgaacctcaaatcttgcatattttattcattgtccttacaaacttagttaagttcacggggact 267  Q
    ||||||||| || | ||||||||| |||| ||||||||||||||||| ||||||| ||| |||||||    
T  25505703 gttcgaaccccagaccttgcatatattatgcattgtccttacaaactgagttaagctcatggggact 25505769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 205 - 266
Target Start/End: Complemental strand, 8127518 - 8127457
Alignment:
Q  205 gaacctcaaatcttgcatattttattcattgtccttacaaacttagttaagttcacggggac 266  Q
    ||||| |||| |||||||||||||| |||||||||||| |||| ||||||| ||||| ||||    
T  8127518 gaaccccaaaccttgcatattttatgcattgtccttaccaactgagttaagctcacgaggac 8127457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 201 - 267
Target Start/End: Original strand, 21914073 - 21914139
Alignment:
Q  201 gttcgaacctcaaatcttgcatattttattcattgtccttacaaacttagttaagttcacggggact 267  Q
    ||||||||| || | ||||||||| |||| |||||||||||| |||| ||||||| ||| |||||||    
T  21914073 gttcgaaccccataccttgcatatattatgcattgtccttaccaactgagttaagctcatggggact 21914139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 216 - 266
Target Start/End: Complemental strand, 41291768 - 41291718
Alignment:
Q  216 cttgcatattttattcattgtccttacaaacttagttaagttcacggggac 266  Q
    ||||||||||||||||||||| ||||| |||| || |||||||||| ||||    
T  41291768 cttgcatattttattcattgttcttaccaactgagctaagttcacgaggac 41291718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 266
Target Start/End: Original strand, 5702180 - 5702244
Alignment:
Q  201 gttcgaacctcaaatcttgcatattttattcattgtccttacaaacttagttaagttcacggggac 266  Q
    |||||||||||||| ||||||||| |||| |||||| ||||| |||| || |||| ||||||||||    
T  5702180 gttcgaacctcaaaccttgcatatattatgcattgt-cttaccaactgagctaagctcacggggac 5702244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 201 - 241
Target Start/End: Complemental strand, 30200885 - 30200845
Alignment:
Q  201 gttcgaacctcaaatcttgcatattttattcattgtcctta 241  Q
    |||||||||||||| ||||||||| |||| |||||||||||    
T  30200885 gttcgaacctcaaaccttgcatatattatgcattgtcctta 30200845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 214 - 266
Target Start/End: Original strand, 51882215 - 51882267
Alignment:
Q  214 atcttgcatattttattcattgtccttacaaacttagttaagttcacggggac 266  Q
    ||||||||||| |||| |||||||| ||| |||| ||||||| ||||||||||    
T  51882215 atcttgcatatattatgcattgtccataccaactgagttaagctcacggggac 51882267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000008; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 202 - 262
Target Start/End: Complemental strand, 11647255 - 11647195
Alignment:
Q  202 ttcgaacctcaaatcttgcatattttattcattgtccttacaaacttagttaagttcacgg 262  Q
    |||||||| |||| ||||||||| |||| |||||||||||| |||| ||||||||||||||    
T  11647255 ttcgaaccccaaaccttgcatatattatgcattgtccttaccaactgagttaagttcacgg 11647195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 191 - 260
Target Start/End: Original strand, 29560882 - 29560951
Alignment:
Q  191 ggtgttcgaagttcgaacctcaaatcttgcatattttattcattgtccttacaaacttagttaagttcac 260  Q
    |||||||| |||||||||||| |||||||||||| |||| ||||||  |||| || | ||||||||||||    
T  29560882 ggtgttcggagttcgaacctcgaatcttgcatatattatacattgttgttaccaattgagttaagttcac 29560951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 189 - 247
Target Start/End: Complemental strand, 18391671 - 18391613
Alignment:
Q  189 gtggtgttcgaagttcgaacctcaaatcttgcatattttattcattgtccttacaaact 247  Q
    |||||| |||| |||||||||||  | |||||||||||||| |||||||||||| ||||    
T  18391671 gtggtggtcgaggttcgaacctcggaccttgcatattttatgcattgtccttaccaact 18391613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 266
Target Start/End: Original strand, 11637574 - 11637639
Alignment:
Q  201 gttcgaacctcaaatcttgcatattttattcattgtccttacaaacttagttaagttcacggggac 266  Q
    ||||||||| | || |||||||||||||| |||||||| ||| |||| ||||||| ||||| ||||    
T  11637574 gttcgaaccccgaaccttgcatattttatgcattgtccataccaactgagttaagctcacgaggac 11637639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 189 - 266
Target Start/End: Original strand, 11844428 - 11844505
Alignment:
Q  189 gtggtgttcgaagttcgaacctcaaatcttgcatattttattcattgtccttacaaacttagttaagttcacggggac 266  Q
    |||||| ||||  ||||||||  ||| ||||||||| |||| |||||||||||| |||| || |||||||||| ||||    
T  11844428 gtggtggtcgagattcgaaccctaaaccttgcatatattatgcattgtccttaccaactgagctaagttcacgtggac 11844505  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 255
Target Start/End: Original strand, 17145351 - 17145404
Alignment:
Q  202 ttcgaacctcaaatcttgcatattttattcattgtccttacaaacttagttaag 255  Q
    ||||||||||| ||||||||||| |||| ||||||| |||| |||| |||||||    
T  17145351 ttcgaacctcagatcttgcatatattatacattgtctttaccaactgagttaag 17145404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 213 - 261
Target Start/End: Complemental strand, 14124348 - 14124300
Alignment:
Q  213 aatcttgcatattttattcattgtccttacaaacttagttaagttcacg 261  Q
    ||||||| |||| |||| |||||||||||| |||| |||||||||||||    
T  14124348 aatcttgtatatattatgcattgtccttaccaactaagttaagttcacg 14124300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 203 - 261
Target Start/End: Original strand, 24799173 - 24799231
Alignment:
Q  203 tcgaacctcaaatcttgcatattttattcattgtccttacaaacttagttaagttcacg 261  Q
    |||||| |||||||||| ||||||||| |||||| | |||||| |||||||||||||||    
T  24799173 tcgaacttcaaatcttgtatattttatacattgttcatacaaatttagttaagttcacg 24799231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 189 - 266
Target Start/End: Original strand, 34420852 - 34420929
Alignment:
Q  189 gtggtgttcgaagttcgaacctcaaatcttgcatattttattcattgtccttacaaacttagttaagttcacggggac 266  Q
    |||||| |||| ||| |||||||||| |||||||||||||| |||||||| ||| || | ||||||| ||||| ||||    
T  34420852 gtggtggtcgaggtttgaacctcaaaccttgcatattttatgcattgtccataccaattgagttaagctcacgtggac 34420929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 200 - 237
Target Start/End: Complemental strand, 10152516 - 10152479
Alignment:
Q  200 agttcgaacctcaaatcttgcatattttattcattgtc 237  Q
    ||||||||||||||| |||||||||||||| |||||||    
T  10152516 agttcgaacctcaaaccttgcatattttatacattgtc 10152479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 216 - 268
Target Start/End: Complemental strand, 31888070 - 31888018
Alignment:
Q  216 cttgcatattttattcattgtccttacaaacttagttaagttcacggggactt 268  Q
    ||||||||| |||| |||||||||||| |||| || |||||||||||| ||||    
T  31888070 cttgcatatattatccattgtccttaccaactgagctaagttcacgggaactt 31888018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 200 - 261
Target Start/End: Complemental strand, 6520131 - 6520070
Alignment:
Q  200 agttcgaacctcaaatcttgcatattttattcattgtccttacaaacttagttaagttcacg 261  Q
    ||||||||||||||| ||||||||| |||| ||||||| |||| |||| ||||||| |||||    
T  6520131 agttcgaacctcaaaccttgcatatattatgcattgtctttactaactgagttaagatcacg 6520070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 202 - 247
Target Start/End: Complemental strand, 11364987 - 11364942
Alignment:
Q  202 ttcgaacctcaaatcttgcatattttattcattgtccttacaaact 247  Q
    ||||||||||| ||||||||||||||||||||||||| ||| ||||    
T  11364987 ttcgaacctcagatcttgcatattttattcattgtccctaccaact 11364942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 202 - 266
Target Start/End: Complemental strand, 51002345 - 51002281
Alignment:
Q  202 ttcgaacctcaaatcttgcatattttattcattgtccttacaaacttagttaagttcacggggac 266  Q
    ||||||||||||| |||||||||||||| |||||||  ||| |||| ||||||| ||||| ||||    
T  51002345 ttcgaacctcaaaccttgcatattttatgcattgtctataccaactgagttaagctcacgaggac 51002281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 202 - 261
Target Start/End: Complemental strand, 31352170 - 31352111
Alignment:
Q  202 ttcgaacctcaaatcttgcatattttattcattgtccttacaaacttagttaagttcacg 261  Q
    ||||||||||  | |||||||||||||| |||||||| ||| ||||||| ||||||||||    
T  31352170 ttcgaacctcgtaccttgcatattttatgcattgtccataccaacttagctaagttcacg 31352111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 266
Target Start/End: Original strand, 10303513 - 10303578
Alignment:
Q  201 gttcgaacctcaaatcttgcatattttattcattgtccttacaaacttagttaagttcacggggac 266  Q
    ||||||||| |  |||||||||||||||| |||||||||||| |||| || |||| ||||| ||||    
T  10303513 gttcgaaccccggatcttgcatattttatgcattgtccttaccaactgagctaagctcacgaggac 10303578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 189 - 254
Target Start/End: Complemental strand, 30380601 - 30380536
Alignment:
Q  189 gtggtgttcgaagttcgaacctcaaatcttgcatattttattcattgtccttacaaacttagttaa 254  Q
    |||||| ||| | |||||||| |||| ||||||||| |||| |||||||||||| |||| ||||||    
T  30380601 gtggtggtcggaattcgaaccccaaaccttgcatatattatacattgtccttaccaactgagttaa 30380536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 189 - 266
Target Start/End: Original strand, 33900714 - 33900791
Alignment:
Q  189 gtggtgttcgaagttcgaacctcaaatcttgcatattttattcattgtccttacaaacttagttaagttcacggggac 266  Q
    ||||||| || | |||||||  || ||||||||||| |||| |||||||||||| |||| || |||||| ||||||||    
T  33900714 gtggtgtccgtaattcgaactccagatcttgcatatattatgcattgtccttaccaactgagataagtttacggggac 33900791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 217 - 266
Target Start/End: Original strand, 6809817 - 6809866
Alignment:
Q  217 ttgcatattttattcattgtccttacaaacttagttaagttcacggggac 266  Q
    |||||||| |||| ||||||||||||||||| || |||||||||||||||    
T  6809817 ttgcatatattatgcattgtccttacaaactgagctaagttcacggggac 6809866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 201 - 268
Target Start/End: Original strand, 17221522 - 17221589
Alignment:
Q  201 gttcgaacctcaaatcttgcatattttattcattgtccttacaaacttagttaagttcacggggactt 268  Q
    |||||||||||  | ||||||||| |||| |||||| ||||| |||||||||||  ||||||||||||    
T  17221522 gttcgaacctcggaccttgcatatattatgcattgttcttaccaacttagttaaactcacggggactt 17221589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 263
Target Start/End: Original strand, 6645208 - 6645254
Alignment:
Q  217 ttgcatattttattcattgtccttacaaacttagttaagttcacggg 263  Q
    ||||||||||||| |||||||||||| |||| || ||||||||||||    
T  6645208 ttgcatattttatgcattgtccttaccaactgagctaagttcacggg 6645254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 216 - 266
Target Start/End: Complemental strand, 52267808 - 52267758
Alignment:
Q  216 cttgcatattttattcattgtccttacaaacttagttaagttcacggggac 266  Q
    |||||||||||||| |||||||||||| |||| ||||||| ||||| ||||    
T  52267808 cttgcatattttatgcattgtccttaccaactgagttaagctcacgaggac 52267758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 266
Target Start/End: Original strand, 10132446 - 10132511
Alignment:
Q  201 gttcgaacctcaaatcttgcatattttattcattgtccttacaaacttagttaagttcacggggac 266  Q
    ||||||||| || | ||||||||| |||| |||||||||||| |||| |  |||||||||||||||    
T  10132446 gttcgaaccccagaccttgcatatattatgcattgtccttaccaactgatctaagttcacggggac 10132511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 266
Target Start/End: Original strand, 18056718 - 18056783
Alignment:
Q  201 gttcgaacctcaaatcttgcatattttattcattgtccttacaaacttagttaagttcacggggac 266  Q
    |||||||||||| |  |||||||| |||| |||||||||||| |||| ||||||| | ||||||||    
T  18056718 gttcgaacctcacacattgcatatattatgcattgtccttaccaactgagttaagcttacggggac 18056783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 200 - 261
Target Start/End: Original strand, 39387792 - 39387853
Alignment:
Q  200 agttcgaacctcaaatcttgcatattttattcattgtccttacaaacttagttaagttcacg 261  Q
    |||||||||| |||| |||||||||||||| |||| ||| ||| ||||||| |||| |||||    
T  39387792 agttcgaaccccaaaccttgcatattttatgcattatccataccaacttagctaagctcacg 39387853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 201 - 265
Target Start/End: Complemental strand, 14521003 - 14520939
Alignment:
Q  201 gttcgaacctcaaatcttgcatattttattcattgtccttacaaacttagttaagttcacgggga 265  Q
    ||||||||| ||||  ||||||||||||| |||||||| ||| |||| || |||| |||||||||    
T  14521003 gttcgaaccccaaactttgcatattttatgcattgtccataccaactgagctaagctcacgggga 14520939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 192 - 266
Target Start/End: Complemental strand, 46011 - 45937
Alignment:
Q  192 gtgttcgaagttcgaacctcaaatcttgcatattttattcattgtccttacaaacttagttaagttcacggggac 266  Q
    |||||||  |||||||||||  ||||||||||| |||| |||| | ||||| |||| || |||||||||||||||    
T  46011 gtgttcggggttcgaacctcggatcttgcatatattatacattattcttaccaactgagctaagttcacggggac 45937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 216 - 266
Target Start/End: Complemental strand, 27263385 - 27263335
Alignment:
Q  216 cttgcatattttattcattgtccttacaaacttagttaagttcacggggac 266  Q
    ||||||||| |||| |||||||| ||| |||| ||||||||||||||||||    
T  27263385 cttgcatatattatgcattgtccataccaactgagttaagttcacggggac 27263335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 216 - 266
Target Start/End: Complemental strand, 27270279 - 27270229
Alignment:
Q  216 cttgcatattttattcattgtccttacaaacttagttaagttcacggggac 266  Q
    ||||||||| |||| |||||||| ||| |||| ||||||||||||||||||    
T  27270279 cttgcatatattatgcattgtccataccaactgagttaagttcacggggac 27270229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 271
Target Start/End: Complemental strand, 35763748 - 35763694
Alignment:
Q  217 ttgcatattttattcattgtccttacaaacttagttaagttcacggggacttaca 271  Q
    |||||||| |||| |||||||||||| |||| ||||||| ||||| |||||||||    
T  35763748 ttgcatatattatgcattgtccttacgaactgagttaagctcacgaggacttaca 35763694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 201 - 267
Target Start/End: Complemental strand, 38553877 - 38553811
Alignment:
Q  201 gttcgaacctcaaatcttgcatattttattcattgtccttacaaacttagttaagttcacggggact 267  Q
    ||||||||| |||| ||| ||||| |||| |||||| ||||| |||| || ||||||||||||||||    
T  38553877 gttcgaaccccaaaccttacatatattatgcattgttcttaccaactgagctaagttcacggggact 38553811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 266
Target Start/End: Original strand, 7872750 - 7872815
Alignment:
Q  201 gttcgaacctcaaatcttgcatattttattcattgtccttacaaacttagttaagttcacggggac 266  Q
    ||||||||| || | ||||||||| |||| |||||||||||| |||| || |||||||||| ||||    
T  7872750 gttcgaaccccagaccttgcatatattatgcattgtccttaccaactgagctaagttcacgtggac 7872815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 238
Target Start/End: Original strand, 15492294 - 15492327
Alignment:
Q  205 gaacctcaaatcttgcatattttattcattgtcc 238  Q
    ||||||||||||||||||||||||| ||||||||    
T  15492294 gaacctcaaatcttgcatattttatacattgtcc 15492327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 266
Target Start/End: Complemental strand, 47342732 - 47342671
Alignment:
Q  205 gaacctcaaatcttgcatattttattcattgtccttacaaacttagttaagttcacggggac 266  Q
    ||||| |||| |||||||||||||| |||||||| ||| |||| || |||||||||| ||||    
T  47342732 gaaccccaaaccttgcatattttatgcattgtccataccaactgagctaagttcacgaggac 47342671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 189 - 261
Target Start/End: Original strand, 32513159 - 32513231
Alignment:
Q  189 gtggtgttcgaagttcgaacctcaaatcttgcatattttattcattgtccttacaaacttagttaagttcacg 261  Q
    |||| |||||| ||||||||||| || ||||||||| |||| |||||| ||||| | || ||||||| |||||    
T  32513159 gtggagttcgaggttcgaacctcgaaccttgcatatattatacattgtacttaccagctgagttaagctcacg 32513231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0238 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0238
Description:

Target: scaffold0238; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 216 - 265
Target Start/End: Complemental strand, 25433 - 25384
Alignment:
Q  216 cttgcatattttattcattgtccttacaaacttagttaagttcacgggga 265  Q
    ||||||||| |||| |||||||||||| |||| ||||||| |||||||||    
T  25433 cttgcatatattatgcattgtccttaccaactgagttaagctcacgggga 25384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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