View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17551_low_1 (Length: 641)
Name: NF17551_low_1
Description: NF17551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17551_low_1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 512; Significance: 0; HSPs: 19)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 512; E-Value: 0
Query Start/End: Original strand, 5 - 582
Target Start/End: Complemental strand, 13872458 - 13871875
Alignment:
| Q |
5 |
ggtagattattctttagaagattttatcgtgtatgtgtacatgggtggcattaaaaatgttcgtttcaagcacttatggataagataaacaagaagtttg |
104 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13872458 |
ggtaaattattctttagaagattttatcgtgtatgtgtacatgggtgacattaaaaatgttcgtttcaagcacttatggataagataaacaagaagtttg |
13872359 |
T |
|
| Q |
105 |
cattaagggaaacaaatttaaaattagtaggatggataaatagtttgattaagcacttttaaactttttgtttataccaggcatcgctacaaataatcaa |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
13872358 |
cattaagggaaacaaatttaaaattagtagaatggataaatagtttgattaagcacttttaaaatttttgtttataccaggcatcgctacaaataatcaa |
13872259 |
T |
|
| Q |
205 |
tggcctcatttccttgttaattgtgtttataggaagtgatcactacacttgttgaagttcttggtaattgtctgtcatt--ctgt----tgtcggagtgt |
298 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | | || ||||||| ||| |
|
|
| T |
13872258 |
tggccccatttccttgttaattgtgtttataggaagtgatcactacacttgttgaagttcttggtaattgtcattctgttgccgtaacttgtcggattgt |
13872159 |
T |
|
| Q |
299 |
caaatcatagtattgatagcataatttcatttttaactgttttatggaactatcaagtgatcacctcacttgttaagttctttgtaattgtctttctccg |
398 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13872158 |
caaatcatagtattgatagcataatttcatttttaactgttttatggaactatcaagtgatcacctcacttgttaagttctttgtaattgtctttctccg |
13872059 |
T |
|
| Q |
399 |
gcattcctacgagtaatgtactgctgaatgtttgtttctttatcatggtttagagtggtgattctgcaagaccacttgaccaggtacattcacagatggg |
498 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13872058 |
gcattcctacgagtaatgtactgctgaatgtttgtttctttatcatggtttagagtggtgattctgcaagaccacttgaccaggtacattcacagatggg |
13871959 |
T |
|
| Q |
499 |
accatcactagaggcactgcaatttgcatataccaagaattatcaaatcgacagttcaaaagtgaaagagaagagggtgagtta |
582 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13871958 |
accatcactagaggcactgcaatttgcatataccaagaattatcaaatcgacagttcaaaagtgaaagagaagagggtgagtta |
13871875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 169 - 625
Target Start/End: Complemental strand, 13884584 - 13884121
Alignment:
| Q |
169 |
tttttgtttataccaggcatcgctacaaataatcaatggcctcatttccttgttaattgtgtttataggaagtgatcactacacttgttgaagttcttgg |
268 |
Q |
| |
|
||||||||||||| | |||| || ||| |||| |||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
13884584 |
tttttgtttatacga--catcactgcaagtaattaatggcttcatttccttgttaattgtgtttatgggaagtgatcactacacttgttgaagttcttgg |
13884487 |
T |
|
| Q |
269 |
taattgtctgtcat------tctgttgtcggagtgtcaaatcatagtattgatagcataatttcatttttaactgttttatggaacta------------ |
350 |
Q |
| |
|
|||||||| || | ||||| | ||||||||| |||| |||||||||||||||| ||| |||||||||||||||||| |
|
|
| T |
13884486 |
taattgtcattctggtgccgtaagttgttagtttgtcaaatcttagttttgatagcataatttccttt--aactgttttatggaactaacaagtgagaac |
13884389 |
T |
|
| Q |
351 |
--tcaagtgatcacctcacttgttaagttctttgtaattgtctttctccggcattcctacgagtaatgtactgctgaatgtttgtttctttatcatggtt |
448 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||| || ||||||||||| |||||||||| || |||||||||||||||| |
|
|
| T |
13884388 |
tatcaagtgatcacctcacttgtgaagttctttgtaattgtctttctccggcatcccaacgagtaatgtcctgctgaatgcttctttctttatcatggtt |
13884289 |
T |
|
| Q |
449 |
tagagtggtgattctgcaagaccacttgaccaggtacattcacagatgggaccatcactagaggcactgcaatttgcatataccaagaattatcaaatcg |
548 |
Q |
| |
|
||| || ||||| ||||| || |||||||||||||| ||||| |||| || ||||||||| | || ||| |||||||||| ||| |||| |
|
|
| T |
13884288 |
taggttgatgattttgcaa--------gatcaggtacattcacaaatggggccattgctggaggcactgaagttagcagataccaagaagaatc-gatcg |
13884198 |
T |
|
| Q |
549 |
acagttcaaaagtgaaagagaagagggtgagttatctccaaatggaaactttgaagaggacaattttgcagtttatg |
625 |
Q |
| |
|
||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| |||||| ||||||||| |
|
|
| T |
13884197 |
acagttcaaaagtaaaagagaagagtgtgagttatctccaaatggaaactttgaagaggttaatttttcagtttatg |
13884121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 322 - 625
Target Start/End: Complemental strand, 13882607 - 13882312
Alignment:
| Q |
322 |
atttcatttttaactgttttatggaactatcaagtgatcacctcacttgttaagttctttgtaattgtctttctccggcattcctacgagtaatgtactg |
421 |
Q |
| |
|
|||||||||||||||||||||||| ||||| |||||| ||||||||||||||||||||||||||||||||||| || | ||| | ||||||||| |
|
|
| T |
13882607 |
atttcatttttaactgttttatgggactatactgtgatcctctcacttgttaagttctttgtaattgtctttctccagcgtcattacatgcaatgtactg |
13882508 |
T |
|
| Q |
422 |
ctgaatgtttgtttctttatcatggtttagagtggtgattctgcaagaccacttgaccaggtacattcacagatgggaccatcactagaggcactgcaat |
521 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||| || |||||||| |||| ||||| || ||||||||| | | |
|
|
| T |
13882507 |
ctgaatgtttgtttctttatcatggtttagagtggtgattttgcaagaccagtt--------acattcacgattggggccatcgctggaggcactgaagt |
13882416 |
T |
|
| Q |
522 |
ttgcatataccaagaattatcaaatcgacagttcaaaagtgaaagagaagagggtgagttatctccaaatggaaactttgaagaggacaattttgcagtt |
621 |
Q |
| |
|
||||| |||||||||| |||||||| |||||||||||| ||||||||||||| ||||||||| ||||||||||||||||||||| | |||| ||||| |
|
|
| T |
13882415 |
ttgcagataccaagaagaatcaaatcaacagttcaaaagccaaagagaagagggagagttatcttgaaatggaaactttgaagaggatagtttttcagtt |
13882316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 420 - 625
Target Start/End: Complemental strand, 16025007 - 16024810
Alignment:
| Q |
420 |
tgctgaatgtttgtttctttatcatggtttagagtggtgattctgcaagaccacttgaccaggtacattcacagatgggaccatcactagaggcactgca |
519 |
Q |
| |
|
|||||||||||| ||||||||||||||||||| ||||||||||||| |||| | || ||| |||| ||||| || | || ||||||||| | |
|
|
| T |
16025007 |
tgctgaatgtttttttctttatcatggtttagggtggtgattctgctagactatatg--------catccacaaatggggccgttgctggaggcactgaa |
16024916 |
T |
|
| Q |
520 |
atttgcatataccaagaattatcaaatcgacagttcaaaagtgaaagagaagagggtgagttatctccaaatggaaactttgaagaggacaattttgcag |
619 |
Q |
| |
|
| |||| ||||||||| ||| |||| |||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| |
|
|
| T |
16024915 |
gtgtgcagataccaagaggaatcgaatccacagttcaaaagcgaaagagaagagggtgagttatctccaaatggagactttgaagaggataattttgcag |
16024816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 422 - 614
Target Start/End: Original strand, 40165746 - 40165930
Alignment:
| Q |
422 |
ctgaatgtttgtttctttatcatggtttagagtggtgattctgcaagaccacttgaccaggtacattcacagatgggaccatcactagaggcactgcaat |
521 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||| |||| | || ||| |||| ||||| |||| || ||||||||| || |
|
|
| T |
40165746 |
ctgaatgtttgtttctttatcatggtttaggctggtgattctgctagactatgtg--------catccacaaatggggtcatcgctggaggcactgacat |
40165837 |
T |
|
| Q |
522 |
ttgcatataccaagaattatcaaatcgacagttcaaaagtgaaagagaagagggtgagttatctccaaatggaaactttgaagaggacaattt |
614 |
Q |
| |
|
|||| ||| ||||| ||||||||||||||||||||| |||| |||||||||||||||||||||||| ||| ||||||||||||| ||||| |
|
|
| T |
40165838 |
gtgcagatatcaagaggaatcaaatcgacagttcaaaagcgaaaaagaagagggtgagttatctccaaacggagactttgaagaggataattt |
40165930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 203 - 276
Target Start/End: Original strand, 12957646 - 12957719
Alignment:
| Q |
203 |
aatggcctcatttccttgttaattgtgtttataggaagtgatcactacacttgttgaagttcttggtaattgtc |
276 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||| ||||||||| ||||||||||||||||||||| |
|
|
| T |
12957646 |
aatggcctcatttccttgttaattgtgtttatgggaagtgattactacactttttgaagttcttggtaattgtc |
12957719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 96 - 162
Target Start/End: Complemental strand, 13876736 - 13876670
Alignment:
| Q |
96 |
agaagtttgcattaagggaaacaaatttaaaattagtaggatggataaatagtttgattaagcactt |
162 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| |
|
|
| T |
13876736 |
agaagtttgcattaagggaaacaaatttaaaattagtaagatggataaatagtttgattaaacactt |
13876670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 311 - 421
Target Start/End: Complemental strand, 16025153 - 16025043
Alignment:
| Q |
311 |
ttgatagcataatttcatttttaactgttttatggaactatcaagtgatcacctcacttgttaagttctttgtaattgtctttctccggcattcctacga |
410 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| |||||||| ||||| | |||||| ||||||||| |||||||||||||||||||| |||||| |
|
|
| T |
16025153 |
ttgatagcaccatttcatttttaactgttttatgggactatcaaatgatcgatttacttgtgaagttctttataattgtctttctccggcatcactacga |
16025054 |
T |
|
| Q |
411 |
gtaatgtactg |
421 |
Q |
| |
|
|| |||||||| |
|
|
| T |
16025053 |
gtgatgtactg |
16025043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 296 - 386
Target Start/End: Complemental strand, 13874491 - 13874401
Alignment:
| Q |
296 |
tgtcaaatcatagtattgatagcataatttcatttttaactgttttatggaactatcaagtgatcacctcacttgttaagttctttgtaat |
386 |
Q |
| |
|
||||||||||||| ||||||| ||| |||| ||||| || |||||| || |||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
13874491 |
tgtcaaatcatagcattgataacatcatttaattttcaatggttttacgggactatcaagtgatcccctcacttgttaagttctttgtaat |
13874401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 482 - 624
Target Start/End: Complemental strand, 13878788 - 13878642
Alignment:
| Q |
482 |
gtacattcacagatgggaccatcactagaggcactgcaatttgcatataccaagaattatcaaatcgacagttcaaaa-gtgaaagagaagag----ggt |
576 |
Q |
| |
|
||||||||||| |||||||||| || |||| |||| | ||| || |||||||||| ||| | |||||||||||||| | ||||||||||| ||| |
|
|
| T |
13878788 |
gtacattcacaaatgggaccattgctggagggactgaagtttacaaataccaagaagaatcta-tcgacagttcaaaaagctaaagagaagagcgagggt |
13878690 |
T |
|
| Q |
577 |
gagttatctccaaatggaaactttgaagaggacaattttgcagtttat |
624 |
Q |
| |
|
|||||||||||||||||| |||||||| |||||||||||||||||||| |
|
|
| T |
13878689 |
gagttatctccaaatggagactttgaataggacaattttgcagtttat |
13878642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 494 - 588
Target Start/End: Original strand, 14397343 - 14397437
Alignment:
| Q |
494 |
atgggaccatcactagaggcactgcaatttgcatataccaagaattatcaaatcgacagttcaaaagtgaaagagaagagggtgagttatctcca |
588 |
Q |
| |
|
||||| |||||||| || ||| || | || ||||||||||||||| |||||||||| |||||||||| |||||||||||||||| |||||||||| |
|
|
| T |
14397343 |
atggggccatcactggaagcattgaagttagcatataccaagaataatcaaatcgatagttcaaaagcgaaagagaagagggtgtgttatctcca |
14397437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 524 - 591
Target Start/End: Original strand, 14391089 - 14391156
Alignment:
| Q |
524 |
gcatataccaagaattatcaaatcgacagttcaaaagtgaaagagaagagggtgagttatctccaaat |
591 |
Q |
| |
|
||||||||||||||| ||||||| | |||||||||| |||||||||||||||| ||||||||||||| |
|
|
| T |
14391089 |
gcatataccaagaatagtcaaatccatagttcaaaagcgaaagagaagagggtgtgttatctccaaat |
14391156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 12 - 70
Target Start/End: Complemental strand, 13876969 - 13876911
Alignment:
| Q |
12 |
tattctttagaagattttatcgtgtatgtgtacatgggtggcattaaaaatgttcgttt |
70 |
Q |
| |
|
|||||||||||||||||||| |||||||| |||||||||||||| ||||| |||||||| |
|
|
| T |
13876969 |
tattctttagaagattttattgtgtatgtatacatgggtggcatgaaaaaggttcgttt |
13876911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 524 - 591
Target Start/End: Original strand, 14392833 - 14392900
Alignment:
| Q |
524 |
gcatataccaagaattatcaaatcgacagttcaaaagtgaaagagaagagggtgagttatctccaaat |
591 |
Q |
| |
|
|||||||||||||| |||||||||| |||||||||| ||||||||||||| |||| |||||||||| |
|
|
| T |
14392833 |
gcatataccaagaagaatcaaatcgatagttcaaaagcaaaagagaagagggagagtcatctccaaat |
14392900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 333 - 420
Target Start/End: Original strand, 14397150 - 14397237
Alignment:
| Q |
333 |
aactgttttatggaactatcaagtgatcacctcacttgttaagttctttgtaattgtctttctccggcattcctacgagtaatgtact |
420 |
Q |
| |
|
||||||||||||| ||||||||||| || |||||||| | |||||||||||||| || |||| ||||||| | | |||||||||||| |
|
|
| T |
14397150 |
aactgttttatgggactatcaagtgttcccctcacttttaaagttctttgtaatcgtgtttcaccggcatcacaatgagtaatgtact |
14397237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 417 - 469
Target Start/End: Original strand, 14392729 - 14392781
Alignment:
| Q |
417 |
tactgctgaatgtttgtttctttatcatggtttagagtggtgattctgcaaga |
469 |
Q |
| |
|
||||||| ||||||||| || ||||||||||||| |||| ||||||||||||| |
|
|
| T |
14392729 |
tactgctaaatgtttgtgtcattatcatggtttaaagtgttgattctgcaaga |
14392781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 540 - 625
Target Start/End: Complemental strand, 13139269 - 13139191
Alignment:
| Q |
540 |
atcaaatcgacagttcaaaagtgaaagagaagagggtgagttatctccaaatggaaactttgaagaggacaattttgcagtttatg |
625 |
Q |
| |
|
||||||||||||||||||| | ||||||||||||| |||||||| || ||||||||||||| |||||||||||||||| |
|
|
| T |
13139269 |
atcaaatcgacagttcaaaggcaaaagagaagagggcgagttatc-------agagactttgaagaggataattttgcagtttatg |
13139191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 200 - 289
Target Start/End: Complemental strand, 13874605 - 13874513
Alignment:
| Q |
200 |
atcaatggcctcatttcc-ttgttaattgtgtttatagg---aagtgatcactacacttgttgaagttcttggtaattgtctgtcattctgttg |
289 |
Q |
| |
|
|||||||||||||||| | ||||||||||||||||| || |||||||| | ||||||| ||||||||||||||||| || ||||||| ||| |
|
|
| T |
13874605 |
atcaatggcctcattttcgttgttaattgtgtttatgggactaagtgatcgccacacttg-tgaagttcttggtaattctcattcattctattg |
13874513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 337 - 383
Target Start/End: Original strand, 14392607 - 14392653
Alignment:
| Q |
337 |
gttttatggaactatcaagtgatcacctcacttgttaagttctttgt |
383 |
Q |
| |
|
||||||||| |||||||||||||| |||||||||| |||||| |||| |
|
|
| T |
14392607 |
gttttatgggactatcaagtgatcccctcacttgtaaagttcattgt |
14392653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 3e-19; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 548 - 625
Target Start/End: Complemental strand, 26202420 - 26202343
Alignment:
| Q |
548 |
gacagttcaaaagtgaaagagaagagggtgagttatctccaaatggaaactttgaagaggacaattttgcagtttatg |
625 |
Q |
| |
|
|||| |||||||||||||||||||||||||| || ||||| |||||| ||||||||||||| || ||||||||||||| |
|
|
| T |
26202420 |
gacacttcaaaagtgaaagagaagagggtgaattgtctcctaatggagactttgaagaggataactttgcagtttatg |
26202343 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 548 - 625
Target Start/End: Complemental strand, 29625622 - 29625545
Alignment:
| Q |
548 |
gacagttcaaaagtgaaagagaagagggtgagttatctccaaatggaaactttgaagaggacaattttgcagtttatg |
625 |
Q |
| |
|
|||| |||||||||||||||||||||||||| || ||||| |||||| ||||||||||||| || ||||||||||||| |
|
|
| T |
29625622 |
gacacttcaaaagtgaaagagaagagggtgaattgtctcctaatggagactttgaagaggataactttgcagtttatg |
29625545 |
T |
|
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