View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17551_low_2 (Length: 537)

Name: NF17551_low_2
Description: NF17551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17551_low_2
NF17551_low_2
[»] chr4 (7 HSPs)
chr4 (24-486)||(34723385-34723846)
chr4 (27-501)||(19614725-19615203)
chr4 (26-122)||(44720653-44720749)
chr4 (166-238)||(10820081-10820153)
chr4 (27-114)||(34277401-34277488)
chr4 (64-112)||(10819984-10820032)
chr4 (26-114)||(47498423-47498511)
[»] chr5 (7 HSPs)
chr5 (29-486)||(30672113-30672569)
chr5 (27-242)||(19351387-19351600)
chr5 (27-240)||(9164080-9164293)
chr5 (27-114)||(27111107-27111194)
chr5 (27-114)||(35449205-35449292)
chr5 (455-501)||(9162842-9162888)
chr5 (27-72)||(28224959-28225004)
[»] chr1 (4 HSPs)
chr1 (30-501)||(22061547-22062019)
chr1 (27-247)||(25347572-25347791)
chr1 (27-123)||(28451266-28451362)
chr1 (29-107)||(12440825-12440903)
[»] chr6 (4 HSPs)
chr6 (168-501)||(10824659-10824991)
chr6 (27-237)||(12853068-12853277)
chr6 (30-122)||(9754684-9754776)
chr6 (455-484)||(12866629-12866658)
[»] chr8 (6 HSPs)
chr8 (27-202)||(11660964-11661138)
chr8 (200-403)||(11661477-11661684)
chr8 (137-247)||(24948269-24948379)
chr8 (428-501)||(11661679-11661752)
chr8 (32-107)||(24948396-24948471)
chr8 (27-107)||(4267814-4267894)
[»] chr7 (6 HSPs)
chr7 (27-246)||(7137810-7138029)
chr7 (26-122)||(43306239-43306336)
chr7 (29-247)||(40023001-40023212)
chr7 (25-125)||(40352162-40352260)
chr7 (292-353)||(7137697-7137758)
chr7 (26-86)||(36582087-36582147)
[»] chr3 (3 HSPs)
chr3 (136-247)||(5134879-5134991)
chr3 (24-114)||(32055431-32055521)
chr3 (317-353)||(5125764-5125800)
[»] chr2 (1 HSPs)
chr2 (24-112)||(21351874-21351962)


Alignment Details
Target: chr4 (Bit Score: 337; Significance: 0; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 24 - 486
Target Start/End: Complemental strand, 34723846 - 34723385
Alignment:
Q  24 tagtaggggtgttcgcggtgcggttcagctcagttatgaggcaaaaagtgaaccgatccaaaaaataaaacatatgcggttcggctcggttcggttggtg 123  Q
    |||||| ||||||||||||||||||| |||| |||||||||||||||||||| ||||||||||||||||||||||||| ||| |||||||||||||||||    
T  34723846 tagtagaggtgttcgcggtgcggttcggctcggttatgaggcaaaaagtgaatcgatccaaaaaataaaacatatgcgattcagctcggttcggttggtg 34723747  T
Q  124 ctagnnnnnnnntccgaaacgatccgatccaaattatcgcactttaatttagatcggttttcggttatccaaattgtaaaaaagtgatagtaatattctt 223  Q
    ||||        || ||| |||||||||||||||||||||  |||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||    
T  34723746 ctagaaaaaaaatctgaaccgatccgatccaaattatcgcggtttaatttggattggttttcggttatccaaattgtaaaaaagtgatagtaatattctt 34723647  T
Q  224 attaaaaattattttgagagaagcnnnnnnncttgttctacaactataaagttatgacttatagtatctcttttatatttaatatattatgctgtagaaa 323  Q
    ||||||||||||||||||||||||       ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34723646 attaaaaattattttgagagaagctttttc-cttgttctacacctataaagttatgacttatagtatctcttttatatttaatatattatgctgtagaaa 34723548  T
Q  324 attctttcctaattttataatttgtaggataagtatactggatacatataagttgccgcagacttttgtaacatgcaattataaagaaacttttgtagca 423  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||     
T  34723547 attctttcctaattctataatttgtaggataagtatactggatacatataagttgccgcaaacttttgtagcatgcaattataaagaaacttttgtagcc 34723448  T
Q  424 tgaagcaatataaacaaatgctatccatggtagtgttgcaagtagttcaggttcagcagtaga 486  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  34723447 tgaaacaatataaacaaatgctatccatggtagtgttgcaagtagttcaggttcagcaataga 34723385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 27 - 501
Target Start/End: Complemental strand, 19615203 - 19614725
Alignment:
Q  27 taggggtgttcgcggtgcggttcagctcagttatgaggcaaaaagtgaaccgatccaaaaaataaaacatatgcggttcggctcggttcggttggtgcta 126  Q
    ||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| |||||    
T  19615203 taggggtgttcgcggtgcggttcggctcggttatgaggcaaaaagtgaaccgatccaaaaaatcaaacatatgcagttcggctcggttcggttgttgcta 19615104  T
Q  127 gnnnnnnnntccgaaacgatccgatccaaattatcgcactttaatttagatcggttttcggttatccaaattgtaaaaaagtgatagtaatattcttatt 226  Q
    |        |||||| |||||||||||||||||||||  |||||||| ||||| |||| |||||||||||||||||||||||||||||||||||||||||    
T  19615103 gaaaaataatccgaaccgatccgatccaaattatcgcggtttaatttggatcgatttttggttatccaaattgtaaaaaagtgatagtaatattcttatt 19615004  T
Q  227 aaaaattattttgagagaagcnnnnnnncttgttctacaactataaagttatgacttatagtatctcttttatatttaatatattatgctgtagaaaatt 326  Q
    ||||||||||||||||||| |       |||||||||||  |||||||||| ||||||||||||||||||| | |||||||||||||| |||||||||||    
T  19615003 aaaaattattttgagagaatctttttc-cttgttctacacatataaagttacgacttatagtatctcttttttctttaatatattatgttgtagaaaatt 19614905  T
Q  327 ctttcctaattttataatttgtaggataagtatactgga-----tacatataagttgccgcagacttttgtaacatgcaattataaagaaacttttgtag 421  Q
    ||||||||||| |||||||||||||||| ||||||||||     |||||||||||||| ||| ||||||| |  ||||||||||||||||||||||||||    
T  19614904 ctttcctaattctataatttgtaggataggtatactggactggatacatataagttgctgcaaacttttgcagtatgcaattataaagaaacttttgtag 19614805  T
Q  422 catgaagcaatataaacaaatgctatccatggtagtgttgcaagtagttcaggttcagcagtagagttcatagattcaac 501  Q
    | |||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| ||||||||    
T  19614804 cctgaagcaatataaacaaatgctatccatggcaatgttgcaagtagttcaggttcagcagtagagttcatggattcaac 19614725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 26 - 122
Target Start/End: Original strand, 44720653 - 44720749
Alignment:
Q  26 gtaggggtgttcgcggtgcggttcagctcagttatgaggcaaaaagtgaaccgatccaaaaaataaaacatatgcggttcggctcggttcggttggt 122  Q
    |||||||||||||||||||||||| | || ||||||| |||||||||||||||||||||||||||||| || ||||||||||||||||||| |||||    
T  44720653 gtaggggtgttcgcggtgcggttcggttcggttatgaagcaaaaagtgaaccgatccaaaaaataaaatatgtgcggttcggctcggttcgattggt 44720749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 166 - 238
Target Start/End: Original strand, 10820081 - 10820153
Alignment:
Q  166 tttaatttagatcggttttcggttatccaaattgtaaaaaagtgatagtaatattcttattaaaaattatttt 238  Q
    |||||||| ||||| ||||||||||||||||||||||| |||||||| |||   || |||||||||| |||||    
T  10820081 tttaatttggatcgattttcggttatccaaattgtaaataagtgataataacgctcgtattaaaaataatttt 10820153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 27 - 114
Target Start/End: Complemental strand, 34277488 - 34277401
Alignment:
Q  27 taggggtgttcgcggtgcggttcagctcagttatgaggcaaaaagtgaaccgatccaaaaaataaaacatatgcggttcggctcggtt 114  Q
    ||||||||||||||||||||||  | || ||| ||||| |||| || ||||||||||||| | ||| || ||||||||||| ||||||    
T  34277488 taggggtgttcgcggtgcggtttggatcggttttgaggtaaaatgtcaaccgatccaaaataaaaatcacatgcggttcggttcggtt 34277401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 64 - 112
Target Start/End: Original strand, 10819984 - 10820032
Alignment:
Q  64 gcaaaaagtgaaccgatccaaaaaataaaacatatgcggttcggctcgg 112  Q
    ||||||||||| |||||| ||||||||||| || |||||||||| ||||    
T  10819984 gcaaaaagtgatccgatctaaaaaataaaatatgtgcggttcgggtcgg 10820032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 26 - 114
Target Start/End: Original strand, 47498423 - 47498511
Alignment:
Q  26 gtaggggtgttcgcggtgcggttcagctcagttatgaggcaaaaagtgaaccgatccaaaaaataaaacatatgcggttcggctcggtt 114  Q
    ||||||||||||||||| |||||  | || ||| ||||   |||||||||||||||||||| | ||| |||  ||||||||| ||||||    
T  47498423 gtaggggtgttcgcggtccggtttggatcggttttgagaggaaaagtgaaccgatccaaaataaaaatcatgcgcggttcggttcggtt 47498511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 324; Significance: 0; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 29 - 486
Target Start/End: Complemental strand, 30672569 - 30672113
Alignment:
Q  29 ggggtgttcgcggtgcggttcagctcagttatgaggcaaaaagtgaaccgatccaaaaaataaaacatatgcggttcggctcggttcggttggtgctagn 128  Q
    |||||||| |||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||| |||     
T  30672569 ggggtgtttgcggtgcggttcggctcggttatgaggcaaaaagtgaaccgatccaaaaaataaaacatatgcggttcggctcggttcaattggtggtaga 30672470  T
Q  129 nnnnnnntccgaaacgatccgatccaaattatcgcactttaatttagatcggttttcggttatccaaattgtaaaaaagtgatagtaatattcttattaa 228  Q
           |||||| |||||||||||||||||||||  |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30672469 aaaaaaatccgaaccgatccgatccaaattatcgcgatttaatttggatcggttttcggttatccaaattgtaaaaaagtgatagtaatattcttattaa 30672370  T
Q  229 aaattattttgagagaagcnnnnnnncttgttctacaactataaagttatgacttatagtatctcttttatatttaatatattatgctgtagaaaattct 328  Q
    |||||||||||||||||||       ||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  30672369 aaattattttgagagaagctttttc-cttattctacacctataaagttatgacttatagtatctcttttatatttaatatattatgttgtagaaaattct 30672271  T
Q  329 ttcctaattttataatttgtaggataagtatactggatacatataagttgccgcagacttttgtaacatgcaattataaagaaacttttgtagcatgaag 428  Q
    ||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| ||||     
T  30672270 ttcctaattctataatttgtaggataagtataccggatacatataagttgccgcaaacttttgtagcatgcaattataaagaaacttttgtagcctgaaa 30672171  T
Q  429 caatataaacaaatgctatccatggtagtgttgcaagtagttcaggttcagcagtaga 486  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||    
T  30672170 caatataaacaaatgctatccatggtagtgttgcaagtagttcatgttcagcaataga 30672113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 27 - 242
Target Start/End: Complemental strand, 19351600 - 19351387
Alignment:
Q  27 taggggtgttcgcggtgcggttcagctcagttatgaggcaaaaagtgaaccgatccaaaaaataaaacatatgcggttcggctcggttcggttggtgcta 126  Q
    ||||||| |||||||  |||||| |||| |||||||||||||||||||||||||||||||  |||||||| ||||||||||||| |||||||||||| ||    
T  19351600 taggggtattcgcgg--cggttcggctcggttatgaggcaaaaagtgaaccgatccaaaatgtaaaacatgtgcggttcggctcagttcggttggtgata 19351503  T
Q  127 gnnnnnnnntccgaaacgatccgatccaaattatcgcactttaatttagatcggttttcggttatccaaattgtaaaaaagtgatagtaatattcttatt 226  Q
              | |||  |||||||||||||||||||   |||||||| ||||||||||||||||||||||||||||||| |||||| |||||||||||||    
T  19351502 aaaaaaaaaacagaactgatccgatccaaattatcgtggtttaatttggatcggttttcggttatccaaattgtaaaaaggtgatattaatattcttatt 19351403  T
Q  227 aaaaattattttgaga 242  Q
    |||||| |||||||||    
T  19351402 aaaaataattttgaga 19351387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 27 - 240
Target Start/End: Complemental strand, 9164293 - 9164080
Alignment:
Q  27 taggggtgttcgcggtgcggttcagctcagttatgaggcaaaaagtgaaccgatccaaaaaataaaacatatgcggttcggctcggttcggttggtgcta 126  Q
    |||||||||| ||||||| |||| |||| ||||||| |||||||||||||||||||||||||||||| || ||| ||||||||||||||||||||| ||     
T  9164293 taggggtgtttgcggtgcagttcggctcggttatgaagcaaaaagtgaaccgatccaaaaaataaaatatgtgcagttcggctcggttcggttggttctt 9164194  T
Q  127 gnnnnnnnntccgaaacgatccgatccaaattatcgcactttaatttagatcggttttcggttatccaaattgtaaaaaagtgatagtaatattcttatt 226  Q
             || ||| ||| ||||||||| ||| |||  |||||||| |||||||||||| |||||||||||||||| ||||||||||| |   | ||||    
T  9164193 aaaataaaatctgaaccgaaccgatccaatttaacgcggtttaatttggatcggttttcgattatccaaattgtaaataagtgatagtagtgcccgtatt 9164094  T
Q  227 aaaaattattttga 240  Q
    |||||| |||||||    
T  9164093 aaaaataattttga 9164080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 27 - 114
Target Start/End: Complemental strand, 27111194 - 27111107
Alignment:
Q  27 taggggtgttcgcggtgcggttcagctcagttatgaggcaaaaagtgaaccgatccaaaaaataaaacatatgcggttcggctcggtt 114  Q
    |||||||||| |||||||||||  | |||||| ||||| |||| || ||||||||||||| | ||| || || |||||||| ||||||    
T  27111194 taggggtgtttgcggtgcggtttggatcagttttgaggtaaaatgtcaaccgatccaaaataaaaatcacatacggttcggttcggtt 27111107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 27 - 114
Target Start/End: Original strand, 35449205 - 35449292
Alignment:
Q  27 taggggtgttcgcggtgcggttcagctcagttatgaggcaaaaagtgaaccgatccaaaaaataaaacatatgcggttcggctcggtt 114  Q
    |||||||||||| |||||||||  | | |||| ||||| |||| || ||||||||||||| | ||| || ||||||||||| ||||||    
T  35449205 taggggtgttcgtggtgcggtttggattagttttgaggtaaaatgtcaaccgatccaaaataaaaatcacatgcggttcggttcggtt 35449292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 455 - 501
Target Start/End: Complemental strand, 9162888 - 9162842
Alignment:
Q  455 agtgttgcaagtagttcaggttcagcagtagagttcatagattcaac 501  Q
    |||| ||| ||||||||| ||||||||||||||||||| ||||||||    
T  9162888 agtggtgctagtagttcaagttcagcagtagagttcatggattcaac 9162842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 72
Target Start/End: Complemental strand, 28225004 - 28224959
Alignment:
Q  27 taggggtgttcgcggtgcggttcagctcagttatgaggcaaaaagt 72  Q
    |||||||||||||||||||||| |  |||||| |||||||||||||    
T  28225004 taggggtgttcgcggtgcggtttaattcagttttgaggcaaaaagt 28224959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 284; Significance: 1e-159; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 30 - 501
Target Start/End: Complemental strand, 22062019 - 22061547
Alignment:
Q  30 gggtgttcgcggtgcggttcagctcagttatgaggcaaaaagtgaaccgatccaaaaaataaaaca-tatgcggttcggctcggttcggttggtgctagn 128  Q
    |||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||     
T  22062019 gggtgttcgcggtgcggttcggctcggttatgaggcaaaaagtgaaccgatccaaaaaataaaaaaatatgcggttcggctcggttcggttggtgctaga 22061920  T
Q  129 nnnnnnn-tccgaaacgatccgatccaaattatcgcactttaatttagatcggttttcggttatccaaattgtaaaaaagtgatagtaatattcttatta 227  Q
            |  ||| ||||||||||||||||||||   |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  22061919 aaaaaaaatttgaaccgatccgatccaaattatcgtggtttaatttggatcggttttcagttatccaaattgtaaaaaagtgatagtaatattcttatta 22061820  T
Q  228 aaaattattttgagagaagcnnnnnnncttgttctacaactataaagttatgacttatagtatctcttttatatttaatatattatgctgtagaaaattc 327  Q
    ||||||||||||||||||||       ||| |||||||  |||||||||| ||||||||||||||||||| | |||||||||||||| ||||||||||||    
T  22061819 aaaattattttgagagaagctttctc-cttattctacacgtataaagttacgacttatagtatctcttttttctttaatatattatgttgtagaaaattc 22061721  T
Q  328 tttcctaattttataatttgtaggataagtatactggatacatataagttgccgcagacttttgtaacatgcaattataaagaaacttttgtagcatgaa 427  Q
    |||||||||| |||||||||| ||||||||||||||||||||| |||||||| ||| |||||||||  ||||||||||||||||||||||||||| ||||    
T  22061720 tttcctaattctataatttgttggataagtatactggatacatttaagttgctgcaaacttttgtagtatgcaattataaagaaacttttgtagcctgaa 22061621  T
Q  428 gcaatataaacaaatgctatccatggtagtgttgcaagtagttcaggttcagcagtagagttcatagattcaac 501  Q
    ||||||||||||||||||||| ||||  || |||||||||||||||||||||||||||||||||| ||||||||    
T  22061620 gcaatataaacaaatgctatctatggcggtcttgcaagtagttcaggttcagcagtagagttcatggattcaac 22061547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 27 - 247
Target Start/End: Complemental strand, 25347791 - 25347572
Alignment:
Q  27 taggggtgttcgcggtgcggttcagctcagttatgaggcaaaaagtgaaccgatccaaaaaataaaacatatgcggttcggctcggttcggttggtgcta 126  Q
    ||||||||||||||||| ||||| |||| |||||||||||||||||||||||||||||||| |||||||| ||||||| ||||||||||||||| |  ||    
T  25347791 taggggtgttcgcggtgtggttcggctcggttatgaggcaaaaagtgaaccgatccaaaaagtaaaacatgtgcggtttggctcggttcggttgataata 25347692  T
Q  127 gnnnnnnnntccgaaacgatccgatccaaattatcgcactttaatttagatcggttttcggttatccaaattgtaaaaaagtgatagtaatattcttatt 226  Q
              |||||  ||||||||||||||||||||  |||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  25347691 aaaaaaaaa-ccgaactgatccgatccaaattatcgcggtttaatttggatcggttttcggttatccaaattgtaaaaaagtgatattaatattcttatt 25347593  T
Q  227 aaaaattattttgagagaagc 247  Q
    |||||| ||||||||| ||||    
T  25347592 aaaaataattttgagataagc 25347572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 27 - 123
Target Start/End: Original strand, 28451266 - 28451362
Alignment:
Q  27 taggggtgttcgcggtgcggttcagctcagttatgaggcaaaaagtgaaccgatccaaaaaataaaacatatgcggttcggctcggttcggttggtg 123  Q
    ||||||||||||| |||||||||  ||| ||||||| |||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||    
T  28451266 taggggtgttcgcagtgcggttcgactcggttatgaagcaaaaagtgaaccgatccaaaaaataaaatatgtgcggttcggctcggttcggttggtg 28451362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 29 - 107
Target Start/End: Original strand, 12440825 - 12440903
Alignment:
Q  29 ggggtgttcgcggtgcggttcagctcagttatgaggcaaaaagtgaaccgatccaaaaaataaaacatatgcggttcgg 107  Q
    |||||||||| |||| ||||| |||| ||||||||||||||||||||||||| |||||||||||| || ||||||||||    
T  12440825 ggggtgttcgtggtgtggttcggctcggttatgaggcaaaaagtgaaccgatacaaaaaataaaaaatgtgcggttcgg 12440903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 205; Significance: 1e-112; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 168 - 501
Target Start/End: Original strand, 10824659 - 10824991
Alignment:
Q  168 taatttagatcggttttcggttatccaaattgtaaaaaagtgatagtaatattcttattaaaaattattttgagagaagcnnnnnnncttgttctacaac 267  Q
    |||||||||||| |||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||        |||||||||||      
T  10824659 taatttagatcgattttcggttatctaaattgtaaaaaagtgatagtaatatttttattaaaaattattttgagagaag-atttttccttgttctacaca 10824757  T
Q  268 tataaagttatgacttatagtatctcttttatatttaatatattatgctgtagaaaattctttcctaattttataatttgtaggataagtatactggata 367  Q
    |||||||||| ||||||||||||||||||| | |||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  10824758 tataaagttacgacttatagtatctcttttttctttaatatattatgttgtagaaaattctttcctaattctataatttgtaggataagtatactggata 10824857  T
Q  368 catataagttgccgcagacttttgtaacatgcaattataaagaaacttttgtagcatgaagcaatataaacaaatgctatccatggtagtgttgcaagta 467  Q
    |||||||||| | ||| ||||||||  |||||||||||||||||| |||||| || |||||||||||||||||||| ||||||||| |||||| ||||||    
T  10824858 catataagttactgcaaacttttgtggcatgcaattataaagaaatttttgtggcctgaagcaatataaacaaatgttatccatggcagtgtttcaagta 10824957  T
Q  468 gttcaggttcagcagtagagttcatagattcaac 501  Q
    ||| ||||||| |||||||||| || ||||||||    
T  10824958 gtttaggttcaacagtagagtttatggattcaac 10824991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 27 - 237
Target Start/End: Original strand, 12853068 - 12853277
Alignment:
Q  27 taggggtgttcgcggtgcggttcagctcagttatgaggcaaaaagtgaaccgatccaaaaaataaaacatatgcggttcggctcggttcggttggtgcta 126  Q
    |||||||||||||||||||||||  ||| |||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||  ||    
T  12853068 taggggtgttcgcggtgcggttcgactcggttatgaggcaaaaagtgaaccgatccaaaaagtaaaacatgtgcggttcggctcggttcggttggtaata 12853167  T
Q  127 gnnnnnnnntccgaaacgatccgatccaaattatcgcactttaatttagatcggttttcggttatccaaattgtaaaaaagtgatagtaatattcttatt 226  Q
              ||||| ||||| |||||||||||||||  |||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  12853168 -aaaaaaaaaccgaaccgatctgatccaaattatcgcggtttaatttggatcggttttcggttatccaaattgtaaaaaagtgatattaatattcttatt 12853266  T
Q  227 aaaaattattt 237  Q
    |||||| ||||    
T  12853267 aaaaataattt 12853277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 30 - 122
Target Start/End: Complemental strand, 9754776 - 9754684
Alignment:
Q  30 gggtgttcgcggtgcggttcagctcagttatgaggcaaaaagtgaaccgatccaaaaaataaaacatatgcggttcggctcggttcggttggt 122  Q
    ||||||| ||||||||||||   ||| ||||||||||||||||| | | ||||||||||||| | | ||||||||| | ||||||||||||||    
T  9754776 gggtgtttgcggtgcggttcgattcaattatgaggcaaaaagtggatcaatccaaaaaataatatacatgcggttcagttcggttcggttggt 9754684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 455 - 484
Target Start/End: Original strand, 12866629 - 12866658
Alignment:
Q  455 agtgttgcaagtagttcaggttcagcagta 484  Q
    ||||||||||||||||||||||||||||||    
T  12866629 agtgttgcaagtagttcaggttcagcagta 12866658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 119; Significance: 1e-60; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 27 - 202
Target Start/End: Original strand, 11660964 - 11661138
Alignment:
Q  27 taggggtgttcgcggtgcggttcagctcagttatgaggcaaaaagtgaaccgatccaaaaaataaaacatatgcggttcggctcggttcggttggtgcta 126  Q
    ||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  11660964 taggggtgttcgcggtgcggttcggctcggttatgaggcaaaaagtgaaccgatccaaaaaatcaaacatatgcggttcggctcggttcggttggtgcta 11661063  T
Q  127 gnnnnnnnntccgaaacgatccgatccaaattatcgcactttaatttagatcggttttcggttatccaaattgtaa 202  Q
    |        |||||| |||||||||||||||||||||  |||||||| ||||||||||||||||||||||||||||    
T  11661064 g-aaaaaaatccgaaccgatccgatccaaattatcgcggtttaatttggatcggttttcggttatccaaattgtaa 11661138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 200 - 403
Target Start/End: Original strand, 11661477 - 11661684
Alignment:
Q  200 taaaaaagtgatagtaatattcttattaaaaattattttgagagaagcnnnnnnncttgttctacaactataaagttatgacttatagtatctcttttat 299  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |       |||||||||||  |||||||||| ||||||||||||||||||| |    
T  11661477 taaaaaagtgatagtaatattcttattaaaaattattttgagagaatctttttc-cttgttctacacatataaagttacgacttatagtatctctttttt 11661575  T
Q  300 atttaatatattatgctgtagaaaattctttcctaattttataatttgtaggataagtat-----actggatacatataagttgccgcagacttttgtaa 394  Q
     |||||||||||||| |||||||||||||||||||||| |||||||||||||||| ||||     |||||||||||||||||||| ||| |||||||||     
T  11661576 ctttaatatattatgttgtagaaaattctttcctaattctataatttgtaggataggtatactggactggatacatataagttgctgcaaacttttgtag 11661675  T
Q  395 catgcaatt 403  Q
     ||||||||    
T  11661676 tatgcaatt 11661684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 137 - 247
Target Start/End: Complemental strand, 24948379 - 24948269
Alignment:
Q  137 ccgaaacgatccgatccaaattatcgcactttaatttagatcggttttcggttatccaaattgtaaaaaagtgatagtaatattcttattaaaaattatt 236  Q
    ||||| |||||||||||||||||||||  |||||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| |||    
T  24948379 ccgaaccgatccgatccaaattatcgcggtttaatttggatcgattttcggttatccaaattgtaaaaaagtgatattaatattcttattaaaaataatt 24948280  T
Q  237 ttgagagaagc 247  Q
    |||||| ||||    
T  24948279 ttgagataagc 24948269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 428 - 501
Target Start/End: Original strand, 11661679 - 11661752
Alignment:
Q  428 gcaatataaacaaatgctatccatggtagtgttgcaagtagttcaggttcagcagtagagttcatagattcaac 501  Q
    ||||| |||||||||||||||||||| | |||||||||||||||| ||||||||||||||||||| ||||||||    
T  11661679 gcaatttaaacaaatgctatccatggcaatgttgcaagtagttcaagttcagcagtagagttcatggattcaac 11661752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 32 - 107
Target Start/End: Complemental strand, 24948471 - 24948396
Alignment:
Q  32 gtgttcgcggtgcggttcagctcagttatgaggcaaaaagtgaaccgatccaaaaaataaaacatatgcggttcgg 107  Q
    |||||||||||| ||||| |||| |||||||||||||||||||||||||||||||| |||||||| || |||||||    
T  24948471 gtgttcgcggtgtggttcggctcggttatgaggcaaaaagtgaaccgatccaaaaagtaaaacatgtgtggttcgg 24948396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 27 - 107
Target Start/End: Complemental strand, 4267894 - 4267814
Alignment:
Q  27 taggggtgttcgcggtgcggttcagctcagttatgaggcaaaaagtgaaccgatccaaaaaataaaacatatgcggttcgg 107  Q
    ||||||||||||||||||||||  | ||  || ||||| |||| || ||||||||||||| | ||| || |||||||||||    
T  4267894 taggggtgttcgcggtgcggtttggatcgattttgaggtaaaatgtcaaccgatccaaaataaaaatcacatgcggttcgg 4267814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 116; Significance: 9e-59; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 116; E-Value: 9e-59
Query Start/End: Original strand, 27 - 246
Target Start/End: Complemental strand, 7138029 - 7137810
Alignment:
Q  27 taggggtgttcgcggtgcggttcagctcagttatgaggcaaaaagtgaaccgatccaaaaaataaaacatatgcggttcggctcggttcggttggtgcta 126  Q
    ||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||    
T  7138029 taggggtgttcgcggtgcggttcggctcggttatgaggcaaaaagtgaaccgatccaaaaaataaaatatgtgcggttcggctcggttcggttggtgcta 7137930  T
Q  127 gnnnnnnnntccgaaacgatccgatccaaattatcgcactttaatttagatcggttttcggttatccaaattgtaaaaaagtgatagtaatattcttatt 226  Q
             ||||||  |||||||||||| | | |||  |||||||| ||| ||||||| |||||||||| |||||| |||||||||||||  |||||||    
T  7137929 aaaaaaatatccgaactgatccgatccaattcaacgcggtttaatttggattggttttcagttatccaaactgtaaacaagtgatagtaatgctcttatt 7137830  T
Q  227 aaaaattattttgagagaag 246  Q
    |||||| |||||||||||||    
T  7137829 aaaaataattttgagagaag 7137810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 26 - 122
Target Start/End: Complemental strand, 43306336 - 43306239
Alignment:
Q  26 gtaggggtgttcgcggtgcggttcagctcagttatgaggcaaaaagtgaaccgatccaa-aaaataaaacatatgcggttcggctcggttcggttggt 122  Q
    ||||||||||||||||||||||||  ||| ||||||| ||||||||||||||||||||| ||||||||| || |||||||||| ||||||||||||||    
T  43306336 gtaggggtgttcgcggtgcggttcgtctcggttatgaagcaaaaagtgaaccgatccaaaaaaataaaatatgtgcggttcggttcggttcggttggt 43306239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 29 - 247
Target Start/End: Complemental strand, 40023212 - 40023001
Alignment:
Q  29 ggggtgttcgcggtgcggttcagctcagttatgaggcaaaaagtgaaccgatccaaaaaataaaacatatgcggttcggctcggttcggttggtgctagn 128  Q
    ||||| ||||||||||||||| ||||  |||||||||||||| ||||||||||||||||| | || |||||          |||||||||||||||||      
T  40023212 ggggtcttcgcggtgcggttcggctcgattatgaggcaaaaattgaaccgatccaaaaaaaataaaatatgta--------cggttcggttggtgctaaa 40023121  T
Q  129 nnnnnnntccgaaacgatccgatccaaattatcgcactttaatttagatcggttttcggttatccaaattgtaaaaaagtgatagtaatattcttattaa 228  Q
           |||||| ||||| ||||||| ||| | |  ||||||||  |||||||||||||||||||||||||||| ||||||||| |||  |||||||||    
T  40023120 aaatatatccgaaccgatcggatccaatttaacacggtttaatttgaatcggttttcggttatccaaattgtaaacaagtgatagcaatgctcttattaa 40023021  T
Q  229 aaat-tattttgagagaagc 247  Q
    ||||  ||||||||||||||    
T  40023020 aaataaattttgagagaagc 40023001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 25 - 125
Target Start/End: Original strand, 40352162 - 40352260
Alignment:
Q  25 agtaggggtgttcgcggtgcggttcagctcagttatgaggcaaaaagtgaaccgatccaaaaaataaaacatatgcggttcggctcggttcggttggtgc 124  Q
    |||||||||||||||||| ||||||||||  |||||   ||||||||||| | |||||||||||||||| || ||||||||||||||||| |||||||||    
T  40352162 agtaggggtgttcgcggtacggttcagcttggttata--gcaaaaagtgatctgatccaaaaaataaaatatgtgcggttcggctcggtttggttggtgc 40352259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 292 - 353
Target Start/End: Complemental strand, 7137758 - 7137697
Alignment:
Q  292 tcttttatatttaatatattatgctgtagaaaattctttcctaattttataatttgtaggat 353  Q
    |||||| | ||| |||||||| | |||||||||||||||||||||| | ||| |||||||||    
T  7137758 tcttttttctttcatatattaggttgtagaaaattctttcctaattctttaagttgtaggat 7137697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 26 - 86
Target Start/End: Original strand, 36582087 - 36582147
Alignment:
Q  26 gtaggggtgttcgcggtgcggttcagctcagttatgaggcaaaaagtgaaccgatccaaaa 86  Q
    ||||||||||| ||||||||||| || || ||| | |||||||| || |||||||||||||    
T  36582087 gtaggggtgtttgcggtgcggtttagatcggttttaaggcaaaacgtcaaccgatccaaaa 36582147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 4e-21; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 136 - 247
Target Start/End: Complemental strand, 5134991 - 5134879
Alignment:
Q  136 tccgaaacgatccgatccaaattatcgcactttaatttagatcggttttcggttatccaaattgtaaaaaagtgatagtaatattcttattaaaaat-ta 234  Q
    |||||| | ||||||||||| ||| |||  |||||||| |||| |||||||||||||||||||||||| ||||||||| |||  |||||||||||||  |    
T  5134991 tccgaaccaatccgatccaatttaacgcgatttaatttggatcagttttcggttatccaaattgtaaataagtgatagcaatgctcttattaaaaataaa 5134892  T
Q  235 ttttgagagaagc 247  Q
    |||||||||||||    
T  5134891 ttttgagagaagc 5134879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 24 - 114
Target Start/End: Original strand, 32055431 - 32055521
Alignment:
Q  24 tagtaggggtgttcgcggtgcggttcagctcagttatgaggcaaaaagtgaaccgatccaaaaaataaaacatatgcggttcggctcggtt 114  Q
    ||||||||||||||||||| |||||  | || ||| ||||   |||||||||||||||||||| | ||| |||  ||||||||| ||||||    
T  32055431 tagtaggggtgttcgcggtccggtttggatcggttttgagaggaaaagtgaaccgatccaaaataaaaatcatgcgcggttcggttcggtt 32055521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 317 - 353
Target Start/End: Complemental strand, 5125800 - 5125764
Alignment:
Q  317 gtagaaaattctttcctaattttataatttgtaggat 353  Q
    ||||||||||||||||||||| ||||| |||||||||    
T  5125800 gtagaaaattctttcctaattctataagttgtaggat 5125764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 24 - 112
Target Start/End: Original strand, 21351874 - 21351962
Alignment:
Q  24 tagtaggggtgttcgcggtgcggttcagctcagttatgaggcaaaaagtgaaccgatccaaaaaataaaacatatgcggttcggctcgg 112  Q
    ||||| |||||||||||||||||||  | || ||| ||||| |||| || ||||||||||||| | ||| || |||| |||||| ||||    
T  21351874 tagtaagggtgttcgcggtgcggtttggatcggttttgaggtaaaatgtcaaccgatccaaaataaaaatcacatgcagttcggttcgg 21351962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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