View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17551_low_5 (Length: 292)
Name: NF17551_low_5
Description: NF17551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17551_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 262; Significance: 1e-146; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 18 - 287
Target Start/End: Complemental strand, 6462547 - 6462278
Alignment:
| Q |
18 |
aatacttcagaaataggaaccaatggtaagagctgaattccaagtctacattctctatattcaggtggagcaaaccaaagtccactttctctcttgttag |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6462547 |
aatacttcagaaataggaaccaatggtaagagctgaattccaagtctacattctctatattcaggtggagcaaaccaaagtccactttctctcttgttag |
6462448 |
T |
|
| Q |
118 |
accatagaaatcccattatcctgttctcttttgtaaactcttctgcatatagtttatctccttcttttatatgccaccacatttgagctgctttaattcc |
217 |
Q |
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|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6462447 |
accatagaaatcccatgatcctgttctcttttgtaaactcttctgcatatagtttatctccttcttttatatgccaccacatttgagctgctttaattcc |
6462348 |
T |
|
| Q |
218 |
aaaagctaatagtgtcgatccattgataaaaaggtctgcgtcgttatatgccaaacccatctgtgctgct |
287 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
6462347 |
aaaagctaatagtgtcgatccattgataaaaaggtctgcgtcgttatatgccaaacccatcagtgctgct |
6462278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 18 - 278
Target Start/End: Original strand, 6496125 - 6496385
Alignment:
| Q |
18 |
aatacttcagaaataggaaccaatggtaagagctgaattccaagtctacattctctatattcaggtggagcaaaccaaagtccactttctctcttgttag |
117 |
Q |
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|
||||||||||||||||||| ||||||||||||||||| ||||| ||||||||| ||||||| ||||||||||||||||||||||||||||||||||| | |
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| T |
6496125 |
aatacttcagaaataggaagcaatggtaagagctgaactccaaccctacattctttatattccggtggagcaaaccaaagtccactttctctcttgttgg |
6496224 |
T |
|
| Q |
118 |
accatagaaatcccattatcctgttctcttttgtaaactcttctgcatatagtttatctccttcttttatatgccaccacatttgagctgctttaattcc |
217 |
Q |
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|
|||||||||||||||| |||| ||| |||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
6496225 |
accatagaaatcccatgatccgattcgcttttgtaaattcttcggcatatagttttcctccttcttttatatgccaccacatttgagccgctttaattcc |
6496324 |
T |
|
| Q |
218 |
aaaagctaatagtgtcgatccattgataaaaaggtctgcgtcgttatatgccaaacccatc |
278 |
Q |
| |
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||| ||||| |||||||||||| ||||||||||||||||||||| || |||||||||||| |
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| T |
6496325 |
aaaggctaaaagtgtcgatccaaggataaaaaggtctgcgtcgttgtacgccaaacccatc |
6496385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 21 - 201
Target Start/End: Complemental strand, 6473766 - 6473586
Alignment:
| Q |
21 |
acttcagaaataggaaccaatggtaagagctgaattccaagtctacattctctatattcaggtggagcaaaccaaagtccactttctctcttgttagacc |
120 |
Q |
| |
|
|||||||||||||||| |||||||| ||||||||||||||| ||||||||| | || ||| ||||||||||| | |||||| |||||||||||||||| |
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| T |
6473766 |
acttcagaaataggaatcaatggtaggagctgaattccaagcctacattctttccatgcagccggagcaaaccataatccactgtctctcttgttagacc |
6473667 |
T |
|
| Q |
121 |
atagaaatcccattatcctgttctcttttgtaaactcttctgcatatagtttatctccttcttttatatgccaccacattt |
201 |
Q |
| |
|
|||||| |||||| ||||| |||||||||||||| ||||| |||| || || ||||||||||||| |||||||||||||| |
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| T |
6473666 |
atagaactcccatcatcctattctcttttgtaaaatcttcctcatagagattctctccttcttttacatgccaccacattt |
6473586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 22 - 166
Target Start/End: Original strand, 6504936 - 6505080
Alignment:
| Q |
22 |
cttcagaaataggaaccaatggtaagagctgaattccaagtctacattctctatattcaggtggagcaaaccaaagtccactttctctcttgttagacca |
121 |
Q |
| |
|
|||||||||||||| ||||||||| ||||||||||| ||| |||||| |||||||||||||||||||||||||||| ||||| || ||| ||| |
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| T |
6504936 |
cttcagaaataggagccaatggtataagctgaattcctgtcctagcttctctccattcaggtggagcaaaccaaagtccactatctcttttattattcca |
6505035 |
T |
|
| Q |
122 |
tagaaatcccattatcctgttctcttttgtaaactcttctgcata |
166 |
Q |
| |
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| || ||||| ||| || ||||||||||||||||||||| |||| |
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| T |
6505036 |
caaaactcccactattctattctcttttgtaaactcttcttcata |
6505080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 23 - 126
Target Start/End: Original strand, 6464790 - 6464893
Alignment:
| Q |
23 |
ttcagaaataggaaccaatggtaagagctgaattccaagtctacattctctatattcaggtggagcaaaccaaagtccactttctctcttgttagaccat |
122 |
Q |
| |
|
||||||||| |||| |||||||||||||||||| ||||| ||||||||| | ||||||| ||||||||||| | |||||| ||||||||||||| ||| |
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|
| T |
6464790 |
ttcagaaattggaagcaatggtaagagctgaatcccaagcctacattctttccattcaggaggagcaaaccataatccactgtctctcttgttagcccaa |
6464889 |
T |
|
| Q |
123 |
agaa |
126 |
Q |
| |
|
|||| |
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|
| T |
6464890 |
agaa |
6464893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 87 - 208
Target Start/End: Original strand, 6456894 - 6457015
Alignment:
| Q |
87 |
gcaaaccaaagtccactttctctcttgttagaccatagaaatcccattatcctgttctcttttgtaaactcttctgcatatagtttatctccttctttta |
186 |
Q |
| |
|
|||||||| |||||||| |||||||| |||||||| | || | || || |||||||||| | ||| ||||| ||||| ||||||||||| |||||| |
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| T |
6456894 |
gcaaaccatagtccactatctctcttattagaccaaacaacactcactactttgttctctttggaaaattcttcagcataaagtttatctccgcctttta |
6456993 |
T |
|
| Q |
187 |
tatgccaccacatttgagctgc |
208 |
Q |
| |
|
|||||||||||||||||||||| |
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| T |
6456994 |
tatgccaccacatttgagctgc |
6457015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 21 - 121
Target Start/End: Original strand, 6525826 - 6525926
Alignment:
| Q |
21 |
acttcagaaataggaaccaatggtaagagctgaattccaagtctacattctctatattcaggtggagcaaaccaaagtccactttctctcttgttagacc |
120 |
Q |
| |
|
||||||||||| |||| |||||||||||||||||| ||||| ||||||||| | |||||| |||| ||||||| | ||||| ||||| ||||| |||| |
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|
| T |
6525826 |
acttcagaaattggaagcaatggtaagagctgaatcccaagcctacattctttccattcagctggaccaaaccataaaccactgtctcttttgttcgacc |
6525925 |
T |
|
| Q |
121 |
a |
121 |
Q |
| |
|
| |
|
|
| T |
6525926 |
a |
6525926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 84 - 159
Target Start/End: Original strand, 6527711 - 6527786
Alignment:
| Q |
84 |
ggagcaaaccaaagtccactttctctcttgttagaccatagaaatcccattatcctgttctcttttgtaaactctt |
159 |
Q |
| |
|
||||||||| | | |||||| ||||||||||||||||||| || |||||| ||||| ||||| |||||||| |||| |
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|
| T |
6527711 |
ggagcaaacgacaatccactgtctctcttgttagaccataaaactcccatgatcctattctcctttgtaaaatctt |
6527786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 21 - 121
Target Start/End: Original strand, 46382875 - 46382975
Alignment:
| Q |
21 |
acttcagaaataggaaccaatggtaagagctgaattccaagtctacattctctatattcaggtggagcaaaccaaagtccactttctctcttgttagacc |
120 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||| ||||| |||| ||| | | | || |||| ||||||| || ||||| ||||| |||||||||| |
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| T |
46382875 |
acttcagaaataggaaacaatggtaagagctgaatcccaaggctacgttccttccacttagctggaccaaaccatagaccactgtctcttttgttagacc |
46382974 |
T |
|
| Q |
121 |
a |
121 |
Q |
| |
|
| |
|
|
| T |
46382975 |
a |
46382975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 159
Target Start/End: Complemental strand, 35244662 - 35244581
Alignment:
| Q |
78 |
tcaggtggagcaaaccaaagtccactttctctcttgttagaccatagaaatcccattatcctgttctcttttgtaaactctt |
159 |
Q |
| |
|
|||| |||||||||| | || ||||| || ||||| |||||||| | || |||||| ||||| |||||||||||||| |||| |
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| T |
35244662 |
tcagttggagcaaacaagagaccactatccctcttattagaccacaaaactcccatgatcctattctcttttgtaaaatctt |
35244581 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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