View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17551_low_8 (Length: 247)
Name: NF17551_low_8
Description: NF17551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17551_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 27385256 - 27385029
Alignment:
| Q |
1 |
aattggacaatatattggatgaatactgtgatgtcctgtcagcaccccttagcaaagaaaatgttgaacacaaacaatcgtctaactccgttaactaaag |
100 |
Q |
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| T |
27385256 |
aattggacaatatattggatgaatactgtgatgtcctgtcagcaccccttagcaaagaaaatgttgaacacaaacaatcgtctaactccgttaactaaag |
27385157 |
T |
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| Q |
101 |
gcttgagtgaaaactcttttagactagatcaaggtctactccatcaaagaatcagttcactccaagttactaactcctacgaggaccatagaatagattc |
200 |
Q |
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| T |
27385156 |
gcttgagggaaaactcttttagactaggtcaagatctactccatcaaagaattagttcactccaagttactaactcctacaaggaccatagaataaattc |
27385057 |
T |
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| Q |
201 |
gacctagagacaattgccttgaccaaat |
228 |
Q |
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| T |
27385056 |
ggcctagagacaattgtctcgaccaaat |
27385029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 52 - 216
Target Start/End: Complemental strand, 27391700 - 27391533
Alignment:
| Q |
52 |
gcaaagaaaatgttgaacacaaacaatcgtctaactccgttaactaaa--ggcttgagtgaaaactcttttagactagatcaa---ggtctactccatca |
146 |
Q |
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|||||| ||||||||||||||| ||||| ||||||| | ||||||||| |||||| | ||| ||||||| |||| | | || |||||||||| ||| |
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| T |
27391700 |
gcaaagcaaatgttgaacacaagcaatcatctaacttcattaactaaattggcttgggagaa--ctcttttggactgggttaattaggtctactccttca |
27391603 |
T |
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| Q |
147 |
aagaatcagttcactccaagttactaactcctacgaggaccatagaatagattcgacctagagacaattg |
216 |
Q |
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| T |
27391602 |
aagaatcagttcactccaagttaccaactcctacgaggaccataacatatattcggcctagagtcaattg |
27391533 |
T |
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