View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17551_low_9 (Length: 235)
Name: NF17551_low_9
Description: NF17551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17551_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 9 - 217
Target Start/End: Complemental strand, 13760390 - 13760182
Alignment:
| Q |
9 |
agtgagatgaagtttgacaatgctgattttgcattggattccaaaattactgcggatgccttcaaccaccctcatccagatgttactgaatttggtctta |
108 |
Q |
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| T |
13760390 |
agtgatatgaggtttgacaatgttgattttgcattggattccaaaattactgtggatgccttcaaccaccctcatccagatgttactgaatttggtctta |
13760291 |
T |
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| Q |
109 |
ttatctctgcttgcagaaggttgttgagttcacagttcacaaactctaaggttgagtttactctacaacaagcaaatgagctagctcacgtccttgtcgg |
208 |
Q |
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| T |
13760290 |
ttatctctgcttgcagaaggttgttgagttcacagtttacaaactctaaggttgagtttactctgcgacaagcaaatgaggtagctcacgtccttgccgg |
13760191 |
T |
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| Q |
209 |
ggctgcccc |
217 |
Q |
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| T |
13760190 |
ggctgcccc |
13760182 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 9 - 204
Target Start/End: Complemental strand, 22255418 - 22255223
Alignment:
| Q |
9 |
agtgagatgaagtttgacaatgctgattttgcattggattccaaaattactgcggatgccttcaaccaccctcatccagatgttactgaatttggtctta |
108 |
Q |
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| T |
22255418 |
agtgacatgaggttcgacaatgttgattttgtcttcgattccaaaacaattgtggatgctttcaacgatactcgtccagatattacagaatttggactta |
22255319 |
T |
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| Q |
109 |
ttatctctgcttgcagaaggttgttgagttcacagttcacaaactctaaggttgagtttactctacaacaagcaaatgagctagctcacgtccttg |
204 |
Q |
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| T |
22255318 |
ttatctccgcttgcaaaagtatgtttaggtcgaagtttacaaactctaaggttgagtttaatcggcgacaagcaaatgaggtagctcacgcccttg |
22255223 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 52; Significance: 6e-21; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 20 - 215
Target Start/End: Complemental strand, 15300215 - 15300020
Alignment:
| Q |
20 |
gtttgacaatgctgattttgcattggattccaaaattactgcggatgccttcaaccaccctcatccagatgttactgaatttggtcttattatctctgct |
119 |
Q |
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| T |
15300215 |
gtttgacaatgttgattttgccatggattccaaaacaaccatggttgctttcgaccatactcgtccatatattactgaatttggacttattatctccgct |
15300116 |
T |
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| Q |
120 |
tgcagaaggttgttgagttcacagttcacaaactctaaggttgagtttactctacaacaagcaaatgagctagctcacgtccttgtcggggctgcc |
215 |
Q |
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| T |
15300115 |
tgcagaagtatgtttagatcgaagtttacaaactttaaggttgagtttaatcggcaacaattaaatgaggtaactcatgtctttgtcggggttgcc |
15300020 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 138 - 197
Target Start/End: Complemental strand, 30449581 - 30449522
Alignment:
| Q |
138 |
tcacagttcacaaactctaaggttgagtttactctacaacaagcaaatgagctagctcac |
197 |
Q |
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| T |
30449581 |
tcacacttcacaaactcgaaggttgagtttaatatgcaacaagcaaatgaggtagctcac |
30449522 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 63 - 168
Target Start/End: Complemental strand, 27980565 - 27980460
Alignment:
| Q |
63 |
gatgccttcaaccaccctcatccagatgttactgaatttggtcttattatctctgcttgcagaaggttgttgagttcacagttcacaaactctaaggttg |
162 |
Q |
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| T |
27980565 |
gatgctttcaaccaccaccgtccaaatattactgaatttggacttattatttttgcttgcaaaagtctgtttaattcgaagttcacaaactctaaagttg |
27980466 |
T |
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| Q |
163 |
agttta |
168 |
Q |
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| T |
27980465 |
ggttta |
27980460 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 147 - 196
Target Start/End: Original strand, 36475921 - 36475970
Alignment:
| Q |
147 |
acaaactctaaggttgagtttactctacaacaagcaaatgagctagctca |
196 |
Q |
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| T |
36475921 |
acaaactctaaggttgactttaatcaacaacaagtaaatgaggtagctca |
36475970 |
T |
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