View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17552_high_12 (Length: 273)
Name: NF17552_high_12
Description: NF17552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17552_high_12 |
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Alignment Details
Target: chr2 (Bit Score: 252; Significance: 1e-140; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 268
Target Start/End: Original strand, 38107268 - 38107535
Alignment:
| Q |
1 |
tagtgttgtctatcagcttcatcttttgataaccacgagaatggagttaaatatcagcacaacatttctttataagcttgatcttgtgcttttaaaataa |
100 |
Q |
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| T |
38107268 |
tagtgttgtctatcagcttcatcttttgataaccacgagaatggagttaaataacagcacaacatttctttatatgcttgatcttgtgcttttaaaataa |
38107367 |
T |
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| Q |
101 |
cttacaagtttgttactattaaacttggattaaattcctaatagaaagaggttggttgtgatgattataaacaattcctcgtactgattgctattgccat |
200 |
Q |
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| T |
38107368 |
cttacaagtttgtgactattaaacttgaattaaattcctaatagaaagaggttggttgtgatgattataaacaattcctcgtactgattgctattgccat |
38107467 |
T |
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| Q |
201 |
ggcatgacagacacgaatacacccatagaatatgagcgtcaccctcttactctgaattatttgatttt |
268 |
Q |
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| T |
38107468 |
ggcatgacagacacgaatacacccatagaatatgagcgtcaccctcttactctgaattatttgatttt |
38107535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 144 - 237
Target Start/End: Complemental strand, 23944719 - 23944632
Alignment:
| Q |
144 |
gaaagaggttggttgtgatgattataaacaattcctcgtactgattgctattgccatggcatgacagacacgaatacacccatagaatatgagc |
237 |
Q |
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| T |
23944719 |
gaaagaggttggttgtgatgattataaaaaattcctcgtactgaatgctattg-----gcatgacagacactt-tacacccatagaatatgagc |
23944632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 3 - 67
Target Start/End: Complemental strand, 23944850 - 23944786
Alignment:
| Q |
3 |
gtgttgtctatcagcttcatcttttgataaccacgagaatggagttaaatatcagcacaacattt |
67 |
Q |
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| T |
23944850 |
gtgttgtctatcagcttcatctcttgtaacccacgagtctggagttaaatatcagcacaacattt |
23944786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 183 - 237
Target Start/End: Complemental strand, 9994130 - 9994076
Alignment:
| Q |
183 |
actgattgctattgccatggcatgacagacacgaatacacccatagaatatgagc |
237 |
Q |
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| T |
9994130 |
actgaatgccattgccatggcatgacagacacgaatacactcatagaatatgagc |
9994076 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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