View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17552_high_16 (Length: 231)
Name: NF17552_high_16
Description: NF17552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17552_high_16 |
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Alignment Details
Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 29271728 - 29271945
Alignment:
| Q |
1 |
ccttctgcaaaagtgtttgtggaatgcttgttggagtgttcaggaaggtatggtttcgaatccgattcgcgggtttttaattatttgttgaagagtttcg |
100 |
Q |
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| T |
29271728 |
ccttctgcaaaagtgtttgtggaatgcttgttggagtgttcaggaaggtatggtttcgaatccgattcgcgggtttttaattatttgttgaagagttttg |
29271827 |
T |
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| Q |
101 |
ttagagttaataagattacagatgctgttgagtgttttagaactatgttggagcatgatttggttccttgggttccgattatgaacaatcttttaactgc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29271828 |
ttagagttaataagattacagatgctgttgagtgttttagaactatgttggagcatgatttggttccttgggttccgattatgaacaatcttttaactgc |
29271927 |
T |
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| Q |
201 |
aatggttaggaggaatat |
218 |
Q |
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|||||||||||||||||| |
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| T |
29271928 |
aatggttaggaggaatat |
29271945 |
T |
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