View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17552_high_17 (Length: 230)
Name: NF17552_high_17
Description: NF17552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17552_high_17 |
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Alignment Details
Target: chr2 (Bit Score: 113; Significance: 2e-57; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 21 - 215
Target Start/End: Original strand, 33272206 - 33272404
Alignment:
| Q |
21 |
caatctccaaaatatcaatgttcacccctcaggaacatttccaatatcttatcctaataagtttaaccaccaaattaagtaagaattcttcttaaatctt |
120 |
Q |
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| T |
33272206 |
caatctccaaaatatcaatgttcactcctcggtaacatttccaatatcctatcctactaaatttaaccaacaaactaagtaacaattcttcttaaatctt |
33272305 |
T |
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| Q |
121 |
aatcttaaatctcacacaaatg----nnnnnnngtacacaatatcaactacaatagcaaccaagtattcatcatccaatctcatatttggtgacaaatc |
215 |
Q |
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| T |
33272306 |
aatcttaaatctcacacaaatgaagaaaaaaaagtacacaatatcaactacagtagtaaccaagtattcatcatccaatctcaaatttggtgacaaatc |
33272404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 98 - 215
Target Start/End: Complemental strand, 32556857 - 32556737
Alignment:
| Q |
98 |
agtaagaattcttcttaaatcttaatcttaaatctcacacaaatgnnnnnnn---gtacacaatatcaactacaatagcaaccaagtattcatcatccaa |
194 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| ||||||||||||||||||| |
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| T |
32556857 |
agtaagaattcttcttaaatcttaatcttaaatctcacacaaatgaaaaaaaaaagtatacaatatcaactacaatagcatccaagtattcatcatccaa |
32556758 |
T |
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| Q |
195 |
tctcatatttggtgacaaatc |
215 |
Q |
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||| | ||||||||||||||| |
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| T |
32556757 |
tcttaaatttggtgacaaatc |
32556737 |
T |
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