View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17552_high_19 (Length: 204)

Name: NF17552_high_19
Description: NF17552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17552_high_19
NF17552_high_19
[»] chr6 (3 HSPs)
chr6 (15-184)||(4867886-4868055)
chr6 (125-157)||(24157755-24157787)
chr6 (19-69)||(5320152-5320202)
[»] chr4 (3 HSPs)
chr4 (77-188)||(13460387-13460502)
chr4 (15-69)||(50313207-50313261)
chr4 (22-58)||(13763100-13763136)
[»] chr1 (2 HSPs)
chr1 (15-69)||(23893876-23893930)
chr1 (19-58)||(126003-126042)
[»] chr8 (1 HSPs)
chr8 (15-56)||(42774402-42774443)
[»] chr7 (1 HSPs)
chr7 (12-56)||(18712675-18712719)
[»] chr3 (1 HSPs)
chr3 (19-58)||(1292861-1292900)


Alignment Details
Target: chr6 (Bit Score: 129; Significance: 6e-67; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 15 - 184
Target Start/End: Complemental strand, 4868055 - 4867886
Alignment:
Q  15 aaaatactaaaataccttaaacaatgtacttaagaaacaaattagttatatatacnnnnnnnaagtaaaacatatagcataactacaaaacataatcgta 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||| ||| ||||||||||||||||||    
T  4868055 aaaatactaaaataccttaaacaatgtacttaagaaacaaattagttatatatactttttttaagtaaaacatatagtatacctacaaaacataatcgta 4867956  T
Q  115 tacctacgtgctacaaaactttactacatataataataataatctatggaaaaagaactctgtagtacat 184  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||  ||||||||||    
T  4867955 tacctacgtgctacaaaactttactacatataataataataatctatgggaaaagaaccgtgtagtacat 4867886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 125 - 157
Target Start/End: Original strand, 24157755 - 24157787
Alignment:
Q  125 ctacaaaactttactacatataataataataat 157  Q
    |||||||||||||||||||||||||||||||||    
T  24157755 ctacaaaactttactacatataataataataat 24157787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 69
Target Start/End: Complemental strand, 5320202 - 5320152
Alignment:
Q  19 tactaaaataccttaaacaatgtacttaagaaacaaattagttatatatac 69  Q
    |||||||||||||| ||||||||| |||||||||| ||||  |||||||||    
T  5320202 tactaaaataccttgaacaatgtatttaagaaacagattaaatatatatac 5320152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 75; Significance: 1e-34; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 77 - 188
Target Start/End: Complemental strand, 13460502 - 13460387
Alignment:
Q  77 aagtaaaacatatagcataactacaaaacataatcgtatacctacgtgctacaaaactt----tactacatataataataataatctatggaaaaagaac 172  Q
    ||||||||||||||| ||| |||||||||||||||||||||||||  ||||||||||||    |||||||||||||||||||||| ||||| ||||||||    
T  13460502 aagtaaaacatatagtatacctacaaaacataatcgtatacctacaggctacaaaacttactttactacatataataataataatatatgggaaaagaac 13460403  T
Q  173 tctgtagtacatcttt 188  Q
    ||||||||||||||||    
T  13460402 tctgtagtacatcttt 13460387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 15 - 69
Target Start/End: Complemental strand, 50313261 - 50313207
Alignment:
Q  15 aaaatactaaaataccttaaacaatgtacttaagaaacaaattagttatatatac 69  Q
    ||||||||||||||||||||||||| || ||||||||||||||| || |||||||    
T  50313261 aaaatactaaaataccttaaacaatatagttaagaaacaaattaattgtatatac 50313207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 58
Target Start/End: Complemental strand, 13763136 - 13763100
Alignment:
Q  22 taaaataccttaaacaatgtacttaagaaacaaatta 58  Q
    ||||||||||||||||||||| |||||||||| ||||    
T  13763136 taaaataccttaaacaatgtatttaagaaacagatta 13763100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 5e-18; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 15 - 69
Target Start/End: Original strand, 23893876 - 23893930
Alignment:
Q  15 aaaatactaaaataccttaaacaatgtacttaagaaacaaattagttatatatac 69  Q
    |||||||||||||||||||||||||||||||||||||||||||| || |||||||    
T  23893876 aaaatactaaaataccttaaacaatgtacttaagaaacaaattaattgtatatac 23893930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 19 - 58
Target Start/End: Complemental strand, 126042 - 126003
Alignment:
Q  19 tactaaaataccttaaacaatgtacttaagaaacaaatta 58  Q
    |||||||||||||||||||||||| |||||||||| ||||    
T  126042 tactaaaataccttaaacaatgtatttaagaaacagatta 126003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 15 - 56
Target Start/End: Original strand, 42774402 - 42774443
Alignment:
Q  15 aaaatactaaaataccttaaacaatgtacttaagaaacaaat 56  Q
    ||||||||||||| ||||||||||||||||||||||||||||    
T  42774402 aaaatactaaaatgccttaaacaatgtacttaagaaacaaat 42774443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 12 - 56
Target Start/End: Original strand, 18712675 - 18712719
Alignment:
Q  12 aagaaaatactaaaataccttaaacaatgtacttaagaaacaaat 56  Q
    |||||||||||||||  ||||||||||||||||||||||||||||    
T  18712675 aagaaaatactaaaaagccttaaacaatgtacttaagaaacaaat 18712719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 19 - 58
Target Start/End: Original strand, 1292861 - 1292900
Alignment:
Q  19 tactaaaataccttaaacaatgtacttaagaaacaaatta 58  Q
    ||||||||||||||||||||| || |||||||||||||||    
T  1292861 tactaaaataccttaaacaatatatttaagaaacaaatta 1292900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University