View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17552_high_2 (Length: 464)

Name: NF17552_high_2
Description: NF17552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17552_high_2
NF17552_high_2
[»] chr2 (3 HSPs)
chr2 (22-458)||(20923738-20924176)
chr2 (22-136)||(20953253-20953367)
chr2 (22-78)||(20934715-20934771)
[»] chr1 (8 HSPs)
chr1 (32-296)||(2006722-2006986)
chr1 (29-98)||(3341079-3341148)
chr1 (343-382)||(3373275-3373314)
chr1 (253-295)||(3349865-3349907)
chr1 (29-78)||(3340929-3340978)
chr1 (29-78)||(3341229-3341278)
chr1 (32-136)||(3341385-3341489)
chr1 (23-119)||(3372952-3373048)
[»] chr5 (1 HSPs)
chr5 (29-235)||(17970129-17970335)
[»] chr4 (1 HSPs)
chr4 (150-292)||(21237924-21238066)


Alignment Details
Target: chr2 (Bit Score: 400; Significance: 0; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 22 - 458
Target Start/End: Original strand, 20923738 - 20924176
Alignment:
Q  22 gtggctaaagatgcttttgaaaacttgatatctggctcccctttgcttgaaaaattggttttgaaaaaagttgatggattcactcaaattaatattcatt 121  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  20923738 gtggctaaagatgcttttgaaaacttgatatctggctcccctttgcttgaaaaattggttttgaaaaaagttgatggattcactcaaattaacattcatt 20923837  T
Q  122 caccaagtatcaagtatgttgacatcaggggtaattttgagggtattagctttgacaacacctcccaactagctaaggtgtttgttgatttaagatcgta 221  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||    
T  20923838 caccaagtatcaagtatgttgacattaggggtaattttgagggtattagctttgacaacacctcccaactagctaaggtgtttgttaatttaagttcgta 20923937  T
Q  222 tttgaactctgaaaccgatcaaagtatgttccatggatgctctagcaacttgcttaaatttttcgatcatctacacaacatccagagcctactgattgct 321  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20923938 tttgaactctgaaaccggtcaaagtatgttccatggatgctctagcaacttgcttaaatttttcgatcatctacacaacatccagagcctactgattgct 20924037  T
Q  322 tcctattatataaaggtatactgctcaagcatatgaatgttgaatttgactgtatga--gtgatcatgtgtatgcaactcttgatctgtaactgtaagta 419  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||    
T  20924038 tcctattctataaaggtatactgctcaagcatatgaatgttgaatttgactgtatgagtgtgatcatgtgtatgcaactcttgatctgtaactgtaagta 20924137  T
Q  420 ttagaaacattatattctaatttagagtcactcttctgt 458  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  20924138 ttagaaacattatattctgatttagagtcactcttctgt 20924176  T

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Target: chr2; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 22 - 136
Target Start/End: Original strand, 20953253 - 20953367
Alignment:
Q  22 gtggctaaagatgcttttgaaaacttgatatctggctcccctttgcttgaaaaattggttttgaaaaaagttgatggattcactcaaattaatattcatt 121  Q
    |||||| |||||||||||||||||||||| ||||||| |||| ||||||||||||||   |||| | |||||||||| ||||| ||||||||||||| |     
T  20953253 gtggctcaagatgcttttgaaaacttgatctctggctgccctctgcttgaaaaattgaaattgatagaagttgatggtttcacccaaattaatattcgtg 20953352  T
Q  122 caccaagtatcaagt 136  Q
    |||||| | ||||||    
T  20953353 caccaaatctcaagt 20953367  T

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Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 22 - 78
Target Start/End: Original strand, 20934715 - 20934771
Alignment:
Q  22 gtggctaaagatgcttttgaaaacttgatatctggctcccctttgcttgaaaaattg 78  Q
    |||||| |||||||||||||||||||||||||||||| |||  ||||||||||||||    
T  20934715 gtggctcaagatgcttttgaaaacttgatatctggctgccccctgcttgaaaaattg 20934771  T

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Target: chr1 (Bit Score: 57; Significance: 1e-23; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 32 - 296
Target Start/End: Original strand, 2006722 - 2006986
Alignment:
Q  32 atgcttttgaaaacttgatatctggctcccctttgcttgaaaaattggttttgaaaaaagttgatggattcactcaaattaatattcattcaccaagtat 131  Q
    |||||||||| || ||||||||| | | |||| |||||||||| |||   |||| | || ||||||| ||||| ||||| || |||||  |||||| | |    
T  2006722 atgcttttgagaatttgatatctagttgccctctgcttgaaaatttgacattgacagaacttgatggtttcacccaaataaacattcacgcaccaaatct 2006821  T
Q  132 caagtatgttgacatcaggggtaattttgagggtattagctttgacaacacctcccaactagctaaggtgtttgttgatttaagatcgtatttgaactct 231  Q
     |||  | | || ||| | ||||| ||||||| |||||||||||||||||| | |||| ||| | | || |||||||||||||| | |||||||||||||    
T  2006822 taaggttttggatatctgtggtaaatttgaggatattagctttgacaacactttccaattagattatgtatttgttgatttaagtttgtatttgaactct 2006921  T
Q  232 gaaaccgatcaaagtatgttccatggatgctctagcaacttgcttaaatttttcgatcatctaca 296  Q
    |||| | |||||||||  || |||||| || | ||||||||||| || ||||| | |||||||||    
T  2006922 gaaagcaatcaaagtagattgcatggaagccccagcaacttgctcaatttttttgctcatctaca 2006986  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 29 - 98
Target Start/End: Original strand, 3341079 - 3341148
Alignment:
Q  29 aagatgcttttgaaaacttgatatctggctcccctttgcttgaaaaattggttttgaaaaaagttgatgg 98  Q
    ||||||| ||||||||| |||||||||||| |||| |||||||| |||||| |||| | ||| |||||||    
T  3341079 aagatgcatttgaaaacatgatatctggctgccctctgcttgaagaattggctttggataaaattgatgg 3341148  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 343 - 382
Target Start/End: Original strand, 3373275 - 3373314
Alignment:
Q  343 tgctcaagcatatgaatgttgaatttgactgtatgagtga 382  Q
    ||||||||||||||||||| ||||||||||||| ||||||    
T  3373275 tgctcaagcatatgaatgtagaatttgactgtaggagtga 3373314  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 253 - 295
Target Start/End: Original strand, 3349865 - 3349907
Alignment:
Q  253 catggatgctctagcaacttgcttaaatttttcgatcatctac 295  Q
    ||||||| ||||||||| ||||| |||||||||||||||||||    
T  3349865 catggattctctagcaatttgctcaaatttttcgatcatctac 3349907  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 29 - 78
Target Start/End: Original strand, 3340929 - 3340978
Alignment:
Q  29 aagatgcttttgaaaacttgatatctggctcccctttgcttgaaaaattg 78  Q
    ||||||||||||||||| |||||||||||| |||  |||||||| |||||    
T  3340929 aagatgcttttgaaaacatgatatctggctgccccctgcttgaagaattg 3340978  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 29 - 78
Target Start/End: Original strand, 3341229 - 3341278
Alignment:
Q  29 aagatgcttttgaaaacttgatatctggctcccctttgcttgaaaaattg 78  Q
    ||||||||||||||||| |||||||||||| |||  |||||||| |||||    
T  3341229 aagatgcttttgaaaacatgatatctggctgccccctgcttgaagaattg 3341278  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 32 - 136
Target Start/End: Original strand, 3341385 - 3341489
Alignment:
Q  32 atgcttttgaaaacttgatatctggctcccctttgcttgaaaaattggttttgaaaaaagttgatggattcactcaaattaatattcattcaccaagtat 131  Q
    |||||||||||||| |||||||| ||| |||  | |||||| |||||   |||||| || ||||||| || || || |||||||||||| |||||| | |    
T  3341385 atgcttttgaaaacatgatatctagctgccccctacttgaagaattgacattgaaagaaattgatggtttaacacagattaatattcatgcaccaaatct 3341484  T
Q  132 caagt 136  Q
    |||||    
T  3341485 caagt 3341489  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 23 - 119
Target Start/End: Original strand, 3372952 - 3373048
Alignment:
Q  23 tggctaaagatgcttttgaaaacttgatatctggctcccctttgcttgaaaaattggttttgaaaaaagttgatggattcactcaaattaatattca 119  Q
    ||||| |||||| |||||||||| |||||||||||| |||| | |||||  | ||||| ||||  ||| ||||||| ||| | ||||||||| ||||    
T  3372952 tggctcaagatgattttgaaaacatgatatctggctgccctctacttgaccatttggtattgatgaaaattgatggcttctcacaaattaatgttca 3373048  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 29 - 235
Target Start/End: Original strand, 17970129 - 17970335
Alignment:
Q  29 aagatgcttttgaaaacttgatatctggctcccctttgcttgaaaaattggttttgaaaaaagttgatggattcactcaaattaatattcattcaccaag 128  Q
    ||||||| ||||||||||||||||| |||| ||||  ||||||||||||  | |||| |  |||| | || ||||||||  ||||||||||  ||||||     
T  17970129 aagatgcctttgaaaacttgatatccggctgccctcagcttgaaaaattaatattgacatcagttaagggtttcactcagtttaatattcacgcaccaaa 17970228  T
Q  129 tatcaagtatgttgacatcaggggtaattttgagggtattagctttgacaacacctcccaactagctaaggtgtttgttgatttaagatcgtatttgaac 228  Q
    | |||||| | ||  |||||  ||||| |||||||| || |||||||||||||| |  ||| |||||  ||| |   |||| ||||| ||||||||||||    
T  17970229 tctcaagttttttcgcatcaatggtaaatttgagggcatcagctttgacaacactttgcaattagctgtggtataccttgaattaagttcgtatttgaac 17970328  T
Q  229 tctgaaa 235  Q
    || ||||    
T  17970329 tccgaaa 17970335  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 150 - 292
Target Start/End: Original strand, 21237924 - 21238066
Alignment:
Q  150 gggtaattttgagggtattagctttgacaacacctcccaactagctaaggtgtttgttgatttaagatcgtatttgaactctgaaaccgatcaaagtatg 249  Q
    |||||| ||||| | ||||||||||||||| || | |||| | | || |||  | ||||||||||| | ||||||||||||||||||  ||||| |||      
T  21237924 gggtaaatttgacgatattagctttgacaaaactttccaatttgttacggtactcgttgatttaagtttgtatttgaactctgaaactaatcaacgtaga 21238023  T
Q  250 ttccatggatgctctagcaacttgcttaaatttttcgatcatc 292  Q
    || |||||||||||||| |  ||||| || |||||| ||||||    
T  21238024 ttgcatggatgctctagtagtttgctcaattttttcaatcatc 21238066  T

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