View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17552_high_7 (Length: 332)
Name: NF17552_high_7
Description: NF17552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17552_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 161; Significance: 8e-86; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 150 - 322
Target Start/End: Complemental strand, 27300996 - 27300824
Alignment:
| Q |
150 |
ttatcaacacacttactttattgatgcatttttattctttaagctaggcatctagtgcttcatgatgagttttagtctatcttaagtcttaacaggtcta |
249 |
Q |
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| T |
27300996 |
ttatcaagacacttactttattgatgcatttttattttttaagctaggcatctagtgcttcatgatgagttttagtctatcttaagtcttaacaggtcta |
27300897 |
T |
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| Q |
250 |
tcctgcggtttcagttgatccatattgagtctgactcattattggctaatggatttaacatgtccacaggttc |
322 |
Q |
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| T |
27300896 |
tcctgcggtttcagttgatccatattgagtctgactcattattggctaatggatttaacatgtccacaagttc |
27300824 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 17 - 152
Target Start/End: Complemental strand, 27301863 - 27301729
Alignment:
| Q |
17 |
tgatagcattactttataaaaatactaacaaacgtctttataaaatttgataaggaatttaaaaataaattttgtatgttcgacacattaaaacatcaaa |
116 |
Q |
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| T |
27301863 |
tgataacattactttataaaaatactaacaaacgtctttataaaacttgataagaaatttaaaaataaa-tttgtatgttcaacacattaaaacatcaaa |
27301765 |
T |
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| Q |
117 |
aataannnnnnnnatataaaagttatcgattgttta |
152 |
Q |
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| T |
27301764 |
aataattttttctatataaaaattatcgattgttta |
27301729 |
T |
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