View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17552_low_1 (Length: 1040)
Name: NF17552_low_1
Description: NF17552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17552_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 269; Significance: 1e-150; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 681 - 1025
Target Start/End: Complemental strand, 44952367 - 44952012
Alignment:
| Q |
681 |
gacatgtcaatcacaaacatacatctaaaatatgaatctgttttgaatattctacttagtttgcaattacttgacatcatcttccaattttaaaatggat |
780 |
Q |
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| T |
44952367 |
gacatgtcagtgacaaatatacatctaaaatatgaatctgttttgaatattctagttagtttgcaattacttgacatcatcttccaattttaaaatggat |
44952268 |
T |
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| Q |
781 |
tttgcta---------------ttggcatgtttgaatgtagtcagaggcagtaatatatagttgtaaattagatttgcacaagaggaacttacgatgacg |
865 |
Q |
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| T |
44952267 |
tttgctaatacttacgtgagcattggcatgtttgaatgtagtcagaggcagtaatatatagttgtaaattagctttgcacaagaggaacttacgatgacg |
44952168 |
T |
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| Q |
866 |
tgggtcatatctcttattcccgtgttcttatccgtacgtagaccgtggttgccacactcttaacaattatggtaaagcttatatcatgcatttgtgagga |
965 |
Q |
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| T |
44952167 |
tgggtcatatctcttattcccgtgttcttatccgtacgtagaccgtggttgccacactcttaacaaatatggtaaagcttatatcatgcatttgtgagga |
44952068 |
T |
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| Q |
966 |
gtccacacgcatttcccagttttgtagtatcttaattgattgaccaatcaccatgatttt |
1025 |
Q |
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| T |
44952067 |
gtccacacgcatttcccagttttgtagtatc----ttgattgaccaatcaccatgatttt |
44952012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 173; E-Value: 2e-92
Query Start/End: Original strand, 253 - 448
Target Start/End: Complemental strand, 44952852 - 44952656
Alignment:
| Q |
253 |
ggatactttcaggtaaaatcaatttaaggtaaacaacaaattttataatcaaaagcttcaaattagaatgaatttgggagacaaaatcaattcaactcta |
352 |
Q |
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| T |
44952852 |
ggatacattcaggtaaaatcaatttaaggtaaacaacaaattttataatcaaaagcttcaaattagaatgaatttgggagacaaaatcaattcaactcta |
44952753 |
T |
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| Q |
353 |
gaaaaacctaacatatca-aaaattaattatatatctctagaaccagttttaatttctccaaaagtagaatcaaacatacacttaaattgttttgag |
448 |
Q |
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| T |
44952752 |
gaaaaacctaacatatcaaaaaattaattatatatctctagaaccagttttaattccttcaaaagtagaatcaaacatgcacttaaattgttttgag |
44952656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 157; E-Value: 6e-83
Query Start/End: Original strand, 520 - 684
Target Start/End: Complemental strand, 44952585 - 44952421
Alignment:
| Q |
520 |
gctgcaagaatttacttcctaatcatatactaggtccttaaaatgttttgtacggacatattgttgatgcaagaatttacttgcagatgcaccagataag |
619 |
Q |
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| T |
44952585 |
gctgcaagaatttacttcctaatcgtatactaggtccttaaaatgttttgtacggacatattgttgatgcaagaatttacttgcagatgcaccagataag |
44952486 |
T |
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| Q |
620 |
caacttgttgctgcaactgcaagaatctgtgatgcacccttcaaatattattcaatgttatgaca |
684 |
Q |
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| T |
44952485 |
caacttgttgctgcaactgcaagaatctgtgatgcacccttcaaatattattctatgttatgaca |
44952421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 132; E-Value: 5e-68
Query Start/End: Original strand, 31 - 187
Target Start/End: Complemental strand, 44953082 - 44952918
Alignment:
| Q |
31 |
aacatgtactccatccgatttcaattataaacaaaagtttactttttcattaaaaaattgatgcaatgtaatacatttttgtgttaatttactttttaca |
130 |
Q |
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| T |
44953082 |
aacatgtactccatccgatttcaattataaacaaaagtttactttttcattaaaaatttgatgcaatgtaatacatttttgtgttaatttactttttaca |
44952983 |
T |
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| Q |
131 |
ttttcagttttaa--------aacataatgtatgtttggttcagttatgacaaaactttattttg |
187 |
Q |
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| T |
44952982 |
ttttcagttttaaaacaacaaaacataatgtatgtttggttcagttatgacaaaactttattttg |
44952918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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