View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17552_low_10 (Length: 308)
Name: NF17552_low_10
Description: NF17552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17552_low_10 |
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| [»] chr4 (5 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 258; Significance: 1e-144; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 18 - 308
Target Start/End: Complemental strand, 27005729 - 27005439
Alignment:
| Q |
18 |
acatgagcaggtcctgctactgttttttgtgattatttgggttactcttttatgtttctgtcgattgccacttcgaatatggttgctactgcccttgcta |
117 |
Q |
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| T |
27005729 |
acatgagcaggtcctgctactgttttttgtgattatttgggttactcttttatgtttctgtcgattgccacttcgaatatggttgctactgcccttgcta |
27005630 |
T |
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| Q |
118 |
agcaggtttgnnnnnnnatgccccttttttaattggaaagaaaatattgatgaatatgcatttgtgaactggtagcttgtattcaaatgtgagtggttag |
217 |
Q |
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| T |
27005629 |
agcaggtttgtttttttaggccccttttttaattggaaagaaaatattgatgaatatgcatttgtgaacgggtagcttgtattcaaatgtgagtggttag |
27005530 |
T |
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| Q |
218 |
tctcacactagttgagaatgggctaaactaatgatatagaagagagatgattcatatgggtaatgctttaaggtttttggtggaaatgtgg |
308 |
Q |
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| T |
27005529 |
tctcacactagttgagaatgggctaaactaatgatatagaagagagatgattcatatgggtaatgctctaaggtttttggtggaaatgtgg |
27005439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 19 - 306
Target Start/End: Complemental strand, 26991282 - 26991009
Alignment:
| Q |
19 |
catgagcaggtcctgctactgttttttgtgattatttgggttactcttttatgtttctgtcgattgccacttcgaatatggttgctactgcccttgctaa |
118 |
Q |
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| T |
26991282 |
catgagcaggtcctgctactgttttttgtgattatttgggctactcttttatgtttctgtcgattgctacttcgaatatggttgctactgcccttgctaa |
26991183 |
T |
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| Q |
119 |
gcaggtttgnnnnnnnatgccccttttttaattg--gaaagaaaatattgatgaatatgcatttgtgaactggtagcttgtattcaaatgtgagtggtta |
216 |
Q |
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| T |
26991182 |
acaggtttg--------------ttttttattcgcatatagaaaattttgatgaatgtg--tttgtgaatgggtatcttgtattcaaatgtgagtggtta |
26991099 |
T |
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| Q |
217 |
gtctcacactagttgagaatgggctaaactaatgatatagaagagagatgattcatatgggtaatgctttaaggtttttggtggaaatgt |
306 |
Q |
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| T |
26991098 |
gtctcacaccggttgaggatgagccaaactaatgatatagaataaagataattcatatggctaatgatcttaggttttgggtggaaatgt |
26991009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 18 - 125
Target Start/End: Original strand, 26976176 - 26976283
Alignment:
| Q |
18 |
acatgagcaggtcctgctactgttttttgtgattatttgggttactcttttatgtttctgtcgattgccacttcgaatatggttgctactgcccttgcta |
117 |
Q |
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||||||||||||||||||||||||||||| ||||||||||| |||| ||||||||| |||||||||| ||||||||||||||||||||||| ||||||| |
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| T |
26976176 |
acatgagcaggtcctgctactgttttttgcgattatttgggctacttgtttatgtttttgtcgattgctacttcgaatatggttgctactgcacttgcta |
26976275 |
T |
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| Q |
118 |
agcaggtt |
125 |
Q |
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| T |
26976276 |
aacaggtt |
26976283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 149 - 263
Target Start/End: Original strand, 26976628 - 26976742
Alignment:
| Q |
149 |
attggaaagaaaatattgatgaatatgcatttgtgaactggtagcttgtattcaaatgtgagtggttagtctcacactagttgagaatgggctaaactaa |
248 |
Q |
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|||||| ||||||||||||||||||| |||||| ||||| ||| | | |||||| | |||||| |||||| |||| | | ||| |||| |||||| ||| |
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| T |
26976628 |
attggatagaaaatattgatgaatatctatttgtaaactgatagttggcattcaactttgagtgtttagtcccacattggctgataatgagctaaattaa |
26976727 |
T |
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| Q |
249 |
tgatatagaagagag |
263 |
Q |
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| T |
26976728 |
tgatatagaagagag |
26976742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 24 - 125
Target Start/End: Complemental strand, 26946347 - 26946246
Alignment:
| Q |
24 |
gcaggtcctgctactgttttttgtgattatttgggttactcttttatgtttctgtcgattgccacttcgaatatggttgctactgcccttgctaagcagg |
123 |
Q |
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|||||||||||||||||| |||||||||| || | || || |||||||| || |||| ||||| |||||||||||||||||||| ||||| |||| |
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| T |
26946347 |
gcaggtcctgctactgttgtttgtgattacatgagctatgtcttcatgtttctatcagttgctacttccaatatggttgctactgccctagctaaacagg |
26946248 |
T |
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| Q |
124 |
tt |
125 |
Q |
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|| |
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| T |
26946247 |
tt |
26946246 |
T |
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