View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17552_low_12 (Length: 301)
Name: NF17552_low_12
Description: NF17552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17552_low_12 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 117; Significance: 1e-59; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 76 - 238
Target Start/End: Original strand, 27423660 - 27423820
Alignment:
| Q |
76 |
aaaaataattcttgtaacgacaaatttatactnnnnnnnnnnngaacagaaggaataaagttaaatataaatcttgtaagcaacctccttagtatattat |
175 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27423660 |
aaaaataattcttgtaccgacaaatttatacttaaaaaaaa--gaacagaaggaataaagttaaatataaatcttgtaagcaacctccttagtatattat |
27423757 |
T |
|
| Q |
176 |
tacaagacgtaaagtacattacaaagaaaagaaaagaatcaaattacacttggtgaaaatatg |
238 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
27423758 |
tacaagacgtaaagtacattacaaagaaaagaaaagaatcaaattacagttggtgaaaatatg |
27423820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 127 - 238
Target Start/End: Original strand, 18073332 - 18073443
Alignment:
| Q |
127 |
ggaataaagttaaatataaatcttgtaagcaacctccttagtatattattacaagacgtaaagtacattacaaagaaaagaaaagaatcaaattacactt |
226 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || |
|
|
| T |
18073332 |
ggaataaagttaaatataaatcttttaagcaacctccttagtatattattacaagacgtaaagtacattacaaagataagaaaagaatcaaattacagtt |
18073431 |
T |
|
| Q |
227 |
ggtgaaaatatg |
238 |
Q |
| |
|
|||||||||||| |
|
|
| T |
18073432 |
ggtgaaaatatg |
18073443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 127 - 262
Target Start/End: Original strand, 27450741 - 27450878
Alignment:
| Q |
127 |
ggaataaagttaaatataaatcttgtaagcaacctccttagtatattatta----caagacgtaaagtacattacaaagaaaagaaaagaatcaaattac |
222 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||| |||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27450741 |
ggaataaagttgaatataaatcttgtaagcaacctc-ttagtatattattatatacaagccgtaaagtacattacaaagaaaagaaaagaatcaaattac |
27450839 |
T |
|
| Q |
223 |
acttggtgaaaatatgggatgggtattcctctacacaaat |
262 |
Q |
| |
|
| |||||||||||||||| ||| |||||||||| |||||| |
|
|
| T |
27450840 |
a-ttggtgaaaatatgggctggttattcctctatacaaat |
27450878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 127 - 221
Target Start/End: Original strand, 18093410 - 18093504
Alignment:
| Q |
127 |
ggaataaagttaaatataaatcttgtaagcaacctccttagtatattattacaagacgtaaagtacattacaaagaaaagaaaagaatcaaatta |
221 |
Q |
| |
|
||||||||| |||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
18093410 |
ggaataaagataaatataaatcctgtaagcaaccttcttagtatattattacaagacgtaaagtacattgaaaagaaaagaaaagaatcaaatta |
18093504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 127 - 208
Target Start/End: Complemental strand, 27936629 - 27936548
Alignment:
| Q |
127 |
ggaataaagttaaatataaatcttgtaagcaacctccttagtatattattacaagacgtaaagtacattacaaagaaaagaa |
208 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
27936629 |
ggaataaagtaaaatataaatcttgtaagcaacctccttagtatattattacaagacgtaaagtacattgaaaagaaaagaa |
27936548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University