View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17552_low_15 (Length: 271)
Name: NF17552_low_15
Description: NF17552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17552_low_15 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 6 - 271
Target Start/End: Complemental strand, 22227195 - 22226928
Alignment:
| Q |
6 |
tgtcaaagcacaacagctacatgaatggcaattcatacaagttttaacacaaacttcataactaagatgnnnnnnncacaagattcttaagactagctaa |
105 |
Q |
| |
|
||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
22227195 |
tgtcaaagcacaaaagctacatgaatgccaattcatacaagttttaacacaaacttcataactaagataaaaaaaacacaagattcttaagactagctaa |
22227096 |
T |
|
| Q |
106 |
acgacctagtactagcaaaacacaag--tcattactccagtactaaaaatacatatgttaaatgtcctaaaatctagggttaagcagagccaaaaaagaa |
203 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
22227095 |
acgacctagtactagcaaaacacaaaattcattactccagtactaaaaacacataagttaaatgtcctaaaatctagggttaagcagatccaaaaaagaa |
22226996 |
T |
|
| Q |
204 |
actaacataactgcatataaagtaacataggaaaacaaggnnnnnnngaagcttgaacttgagttcct |
271 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
22226995 |
actaacataactgcatataaagtaacataggaaaacaaggaaagaaagaagcttgaacttgagttcct |
22226928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University