View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17552_low_20 (Length: 214)
Name: NF17552_low_20
Description: NF17552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17552_low_20 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 103; Significance: 2e-51; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 15 - 199
Target Start/End: Original strand, 33272216 - 33272404
Alignment:
| Q |
15 |
aatatcaatgttcacccctcaggaacatttccaatatcttatcctaataagtttaaccaccaaattaagtaagaattcttcttaaatcttaatcttaaat |
114 |
Q |
| |
|
||||||||||||||| |||| | ||||||||||||||| ||||||| ||| |||||||| |||| ||||||| ||||||||||||||||||||||||||| |
|
|
| T |
33272216 |
aatatcaatgttcactcctcggtaacatttccaatatcctatcctactaaatttaaccaacaaactaagtaacaattcttcttaaatcttaatcttaaat |
33272315 |
T |
|
| Q |
115 |
ctcacacaaatg----nnnnnnngtacacaatatcaactacaatagcaaccaagtattcatcatccaatctcatatttggtgacaaatc |
199 |
Q |
| |
|
|||||||||||| ||||||||||||||||||| ||| |||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
33272316 |
ctcacacaaatgaagaaaaaaaagtacacaatatcaactacagtagtaaccaagtattcatcatccaatctcaaatttggtgacaaatc |
33272404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 82 - 199
Target Start/End: Complemental strand, 32556857 - 32556737
Alignment:
| Q |
82 |
agtaagaattcttcttaaatcttaatcttaaatctcacacaaatgnnnnnnn---gtacacaatatcaactacaatagcaaccaagtattcatcatccaa |
178 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
32556857 |
agtaagaattcttcttaaatcttaatcttaaatctcacacaaatgaaaaaaaaaagtatacaatatcaactacaatagcatccaagtattcatcatccaa |
32556758 |
T |
|
| Q |
179 |
tctcatatttggtgacaaatc |
199 |
Q |
| |
|
||| | ||||||||||||||| |
|
|
| T |
32556757 |
tcttaaatttggtgacaaatc |
32556737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University