View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17552_low_4 (Length: 446)
Name: NF17552_low_4
Description: NF17552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17552_low_4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 411; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 18 - 432
Target Start/End: Original strand, 52699658 - 52700072
Alignment:
| Q |
18 |
gctaggtaaattcgaaatcccaaatggatctgttaccgtgtttgctgccagcagcagtctcatacttatacccttatatgagagatttataatcccaatt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52699658 |
gctaggtaaattcgaaatcccaaatggatctgttaccgtgtttgctgccagcagcagtctcatacttatacccttatatgagagatttataatcccaatt |
52699757 |
T |
|
| Q |
118 |
ctccgaaaatttaccggccacagccgcggcatcacatccttacaacgaatgggagttggactttttgtctcaatcatcgctatggcttcagcagcattgg |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52699758 |
ctccgaaaatttaccggccacagccgcggcatcacatccttacaacgaatgggagttggactttttgtctcaatcatcgctatggcttcagcagcattgg |
52699857 |
T |
|
| Q |
218 |
ttgaaaagacgagacgggaacactacccaggagagaacagcatgagtgtgttttgggtgttacctcaattctttctaatgggtagtgctgaagtttttac |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52699858 |
ttgaaaagacgagacgggaacactacccaggagagaacagcatgagtgtgttttggttgttacctcaattctttctaatgggtagtgctgaagtttttac |
52699957 |
T |
|
| Q |
318 |
ctatgtgggacagttggagtttttctatgatgaggcgacggacgggacaaaaagtattagtagtgcagtgtttttgtctgaggttggaatcggaagttgg |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52699958 |
ctatgtgggacagttggagtttttctatgatgaggcgacggacgggacaaaaagtattagtagtgcagtgtttttgtctgaggttggaatcggaagttgg |
52700057 |
T |
|
| Q |
418 |
ttgagtagtgctttg |
432 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
52700058 |
ttgagtagtgctttg |
52700072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 76 - 432
Target Start/End: Original strand, 52713993 - 52714349
Alignment:
| Q |
76 |
ctcatacttatacccttatatgagagatttataatcccaattctccgaaaatttaccggccacagccgcggcatcacatccttacaacgaatgggagttg |
175 |
Q |
| |
|
||||||||| |||| || || |||||||| ||||||||| ||||||| || |||||||||||| ||| ||||||||||| |||||||||||||| |||| |
|
|
| T |
52713993 |
ctcatacttgtacctttctacgagagattcataatcccatttctccgtaagtttaccggccaccaccgtggcatcacatcgttacaacgaatgggtgttg |
52714092 |
T |
|
| Q |
176 |
gactttttgtctcaatcatcgctatggcttcagcagcattggttgaaaagacgagacgggaacactacccaggagagaacagcatgagtgtgttttgggt |
275 |
Q |
| |
|
| ||||| ||||||||||||||||||||||||| ||||| |||||||| | |||||| || ||| |||| | || |||||||||||||||||| | |
|
|
| T |
52714093 |
ggcttttcatctcaatcatcgctatggcttcagctgcattagttgaaaaaaggagacgcgatcaccacccgcaaccaaatagcatgagtgtgttttggtt |
52714192 |
T |
|
| Q |
276 |
gttacctcaattctttctaatgggtagtgctgaagtttttacctatgtgggacagttggagtttttctatgatgaggcgacggacgggacaaaaagtatt |
375 |
Q |
| |
|
||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| || ||||| || |||||||| ||||| ||||||||||||||| |
|
|
| T |
52714193 |
gttacctcaattctttctaattggtactgctgaagtttttacctatgtgggacagttagaatttttttacgatgaggcaacggatgggacaaaaagtatt |
52714292 |
T |
|
| Q |
376 |
agtagtgcagtgtttttgtctgaggttggaatcggaagttggttgagtagtgctttg |
432 |
Q |
| |
|
||||||||| ||||||||||| || ||||||| ||||||||||| |||| ||||||| |
|
|
| T |
52714293 |
agtagtgcaatgtttttgtctaagattggaattggaagttggttaagtactgctttg |
52714349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 173; E-Value: 7e-93
Query Start/End: Original strand, 28 - 432
Target Start/End: Original strand, 52722967 - 52723371
Alignment:
| Q |
28 |
ttcgaaatcccaaatggatctgttaccgtgtttgctgccagcagcagtctcatacttatacccttatatgagagatttataatcccaattctccgaaaat |
127 |
Q |
| |
|
||||||||||||| || ||||| | || |||||||||| || | | ||||||||| |||| | || |||||||| ||||||||| ||||||| |||| |
|
|
| T |
52722967 |
ttcgaaatcccaacaggttctgtccctgtctttgctgccatcaacggcctcatacttgtacctctctacgagagattaataatcccatttctccgcaaat |
52723066 |
T |
|
| Q |
128 |
ttaccggccacagccgcggcatcacatccttacaacgaatgggagttggactttttgtctcaatcatcgctatggcttcagcagcattggttgaaaagac |
227 |
Q |
| |
|
|||| ||||| ||| ||||||||||| |||||||||||||| ||||| |||||| ||||||||||||||||||||||||| ||||| |||||||| | |
|
|
| T |
52723067 |
ttacaggccatcaccgtggcatcacatcgttacaacgaatgggtgttgggctttttatctcaatcatcgctatggcttcagctgcattagttgaaaaaag |
52723166 |
T |
|
| Q |
228 |
gagacgggaacactacccaggagagaacagcatgagtgtgttttgggtgttacctcaattctttctaatgggtagtgctgaagtttttacctatgtggga |
327 |
Q |
| |
|
|||||| || |||||||| | || |||||||||||||||||| |||||||||||||||||||||| |||| ||||||||||||||||||||||||| |
|
|
| T |
52723167 |
gagacgcgatcactacccgcaaccaaatagcatgagtgtgttttggttgttacctcaattctttctaattggtactgctgaagtttttacctatgtggga |
52723266 |
T |
|
| Q |
328 |
cagttggagtttttctatgatgaggcgacggacgggacaaaaagtattagtagtgcagtgtttttgtctgaggttggaatcggaagttggttgagtagtg |
427 |
Q |
| |
|
||||| || ||||| || |||||||| || || |||||||||||||||||||||||| ||||||||||| | ||||||| ||||||||||| |||| || |
|
|
| T |
52723267 |
cagttagaatttttttacgatgaggcaacagatgggacaaaaagtattagtagtgcaatgtttttgtctctgattggaattggaagttggttaagtactg |
52723366 |
T |
|
| Q |
428 |
ctttg |
432 |
Q |
| |
|
||||| |
|
|
| T |
52723367 |
ctttg |
52723371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University