View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17552_low_5 (Length: 378)
Name: NF17552_low_5
Description: NF17552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17552_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 302; Significance: 1e-170; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 10 - 327
Target Start/End: Complemental strand, 38107291 - 38106974
Alignment:
| Q |
10 |
agatgaagctgatagacaacactaactctatgagtttattcagactctaaaccaattcataaaggaaaagagtatagttaaaactcaagaaaactagata |
109 |
Q |
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| T |
38107291 |
agatgaagctgatagacaacactaactctatgagtttattcagactctaaaccaattcataaaggaaaagagtatagttaaaactcaataaaactagatt |
38107192 |
T |
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| Q |
110 |
aaaaccatataattatatacaaatacaactgaattcaaaggtaataaacaacaagacaaatgaacctcagtttaatctctttatgtcattggaaatgtag |
209 |
Q |
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| T |
38107191 |
aaaaccatataattatatacaaatacaactgaattcaaaggtaataaacaacaagacaaatgaacctcagtttaatctctttatgtcattggaaatgtag |
38107092 |
T |
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| Q |
210 |
caacaccaagtaggttcaccctgctaacaggatcttgggttaactacaacctcagacaagttggattgttaaacaacatcattggtacaaacaaaaccag |
309 |
Q |
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| T |
38107091 |
caacaccaagtaggttcaccctgcgaacaggatcttgggttaactacaacctcagacaagttggattgttaaaaaacatcattggtacaaacaaaaccag |
38106992 |
T |
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| Q |
310 |
aacacacaatagaaaatt |
327 |
Q |
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| T |
38106991 |
aacacacaatagaaaatt |
38106974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 174 - 296
Target Start/End: Original strand, 36344131 - 36344254
Alignment:
| Q |
174 |
cctcagtttaatctctttatgtcattggaaatgtagcaacaccaagtaggttcaccctgctaacaggatcttgggttaactacaacctcagacaagttgg |
273 |
Q |
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| T |
36344131 |
cctcagtttaatctctttatgtcattggaaatgtagcaacaccaagtaggttcaccctgcgaacaggatcttgggttaacaacaacctcagacaagttgg |
36344230 |
T |
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| Q |
274 |
attg-ttaaacaacatcattggta |
296 |
Q |
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|||| ||||| ||||||||||||| |
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| T |
36344231 |
attgtttaaaaaacatcattggta |
36344254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 323 - 361
Target Start/End: Complemental strand, 38106960 - 38106922
Alignment:
| Q |
323 |
aaatttatgcaaaacacaactcatactagaatagttaaa |
361 |
Q |
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| T |
38106960 |
aaatttatgcaaaacacaactcaaactagaatagttaaa |
38106922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 174 - 208
Target Start/End: Original strand, 14726924 - 14726958
Alignment:
| Q |
174 |
cctcagtttaatctctttatgtcattggaaatgta |
208 |
Q |
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| T |
14726924 |
cctcagtttaatctcttcatgtcattggaaatgta |
14726958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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