View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17552_low_6 (Length: 374)
Name: NF17552_low_6
Description: NF17552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17552_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 25 - 361
Target Start/End: Complemental strand, 9477781 - 9477445
Alignment:
| Q |
25 |
tgcaataacattggtgatcagtggcaaaatgaccgtcttattatctnnnnnnnntagtttgcattgnnnnnnnnnnnnnnnnnagctctacatgtatgta |
124 |
Q |
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| T |
9477781 |
tgcaataaaattggtgatcagtggcgaaatgaccgtcttattatctaaaaaaaatagtttgcattgttttttattttaattttagctctacatgtacgta |
9477682 |
T |
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| Q |
125 |
aagtctggatctgtcctgctaccacttacgtctttaattaaaacatgctataattaactatcaatctaccaagtttgacttttaatatagtcccacatcg |
224 |
Q |
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| T |
9477681 |
aagtctggatctgtcctgccaccacttacgtctttaattaaaacatgctataattaactatcaatctaccaagtttgacttttaatatagtcccacatcg |
9477582 |
T |
|
| Q |
225 |
aaacctttggaagaagttgtggggtccaaacgagagggtggagccggagctgatttcggcggtgtatgaggcgatgggtgttggaagtgatttcggcaaa |
324 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
9477581 |
aaacctttggaagaagttgtggggtccaaacgagagggtggagccggagctgatttcggcggtgtatgaggcgatgggtgttggaagtgatttcggcgaa |
9477482 |
T |
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| Q |
325 |
cccttttaatttgtaatcaagaatgaaaggtggtggt |
361 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
9477481 |
cccttttaatttgtaatcaagaatgaaaggtggtggt |
9477445 |
T |
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