View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17552_low_8 (Length: 340)
Name: NF17552_low_8
Description: NF17552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17552_low_8 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 314; Significance: 1e-177; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 1 - 326
Target Start/End: Complemental strand, 2483097 - 2482772
Alignment:
| Q |
1 |
aaaacgagtgagaacactatgagcttgctcttgtaaaggtgacatcaacttcatatttgatcctttgcacttctctaacattatatcgtggtcttctttt |
100 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2483097 |
aaaacgagtgagaacacattgagcttgctcttgtaaaggtgacatcaacttcatatttgatcctttgcacttctctaacattatatcgtggtcttctttt |
2482998 |
T |
|
| Q |
101 |
tgcttaatatcatcaattgctacatcaacctaaaattaatataaatgaattaatatggagttttgggaataaacattaatgcatcataccttccaaacta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2482997 |
tgcttaatatcatcaattgctacatcaacctaaaattaatataaatgaattaatatggagttttgggaataaacattaatgcatcataccttccaaacta |
2482898 |
T |
|
| Q |
201 |
acgagttcgaatataatgatcaatacaacatacctgctttgcaaagtcagttaaacttgtgtgagaattgatgaatcttttaatgaaagcattaatactc |
300 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2482897 |
acgagttctaatataatgatcaatacaacatacctgctttgcaaagtcagttaaacttgtgtgagaattgatgaatcttttaatgaaagcattaatactc |
2482798 |
T |
|
| Q |
301 |
tccgatcttcctgtggttgtcattcc |
326 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
2482797 |
tccgatcttcctgtggttgtcattcc |
2482772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 5364998 - 5365193
Alignment:
| Q |
1 |
aaaacgagtgagaacactatgagcttgctcttgtaaaggtgacatcaacttcatatttgatcctttgcacttctctaacattatatcgtggtcttctttt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5364998 |
aaaacgagtgagaacactatgagcttgctcttgtaaaggtgacatcaacttcatatttgatcatttgcacttctctaacattatatcgtggtcttctttt |
5365097 |
T |
|
| Q |
101 |
tgcttaatatcatcaattgctacatcaacctaaaattaatataaatgaattaatatggagttttgggaataaacattaatgcatcataccttccaa |
196 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
5365098 |
tgcttaatatcatcaattgctacatcaacctaaagttaatataaatgaattaatatggagttttgggaataaacactaatgcatcataccttccaa |
5365193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 314; Significance: 1e-177; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 1 - 326
Target Start/End: Original strand, 12631009 - 12631334
Alignment:
| Q |
1 |
aaaacgagtgagaacactatgagcttgctcttgtaaaggtgacatcaacttcatatttgatcctttgcacttctctaacattatatcgtggtcttctttt |
100 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12631009 |
aaaacgagtgagaacacaatgagcttgctcttgtaaaggtgacatcaacttcatatttgatcctttgcacttctctaacattatatcgtggtcttctttt |
12631108 |
T |
|
| Q |
101 |
tgcttaatatcatcaattgctacatcaacctaaaattaatataaatgaattaatatggagttttgggaataaacattaatgcatcataccttccaaacta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12631109 |
tgcttaatatcatcaattgctacatcaacctaaaattaatataaatgaattaatatggagttttgggaataaacattaatgcatcataccttccaaacta |
12631208 |
T |
|
| Q |
201 |
acgagttcgaatataatgatcaatacaacatacctgctttgcaaagtcagttaaacttgtgtgagaattgatgaatcttttaatgaaagcattaatactc |
300 |
Q |
| |
|
||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12631209 |
acgagctctaatataatgatcaatacaacatacctgctttgcaaagtcagttaaacttgtgtgagaattgatgaatcttttaatgaaagcattaatactc |
12631308 |
T |
|
| Q |
301 |
tccgatcttcctgtggttgtcattcc |
326 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
12631309 |
tccgatcttcctgtggttgtcattcc |
12631334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 1 - 326
Target Start/End: Original strand, 27106727 - 27107052
Alignment:
| Q |
1 |
aaaacgagtgagaacactatgagcttgctcttgtaaaggtgacatcaacttcatatttgatcctttgcacttctctaacattatatcgtggtcttctttt |
100 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27106727 |
aaaacgagtgagaacacattgagcttgctcttgtaaaggtgacatcaacttcatatttgatcctttgcacttctctaacattatatcgtggtcttctttt |
27106826 |
T |
|
| Q |
101 |
tgcttaatatcatcaattgctacatcaacctaaaattaatataaatgaattaatatggagttttgggaataaacattaatgcatcataccttccaaacta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27106827 |
tgcttaatatcatcaattgctacatcaacctaaaattaatataaatgaattaatatggagttttgggaataaacattaatgcatcataccttccaaacta |
27106926 |
T |
|
| Q |
201 |
acgagttcgaatataatgatcaatacaacatacctgctttgcaaagtcagttaaacttgtgtgagaattgatgaatcttttaatgaaagcattaatactc |
300 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27106927 |
acgagttctaatataatgatcaatacaacatacctgctttgcaaagtcagttaaacttgtgtgagaattgatgaatcttttaatgaaagcattaatactc |
27107026 |
T |
|
| Q |
301 |
tccgatcttcctgtggttgtcattcc |
326 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
27107027 |
tccgatcttcctgtggttgtcattcc |
27107052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 310; Significance: 1e-174; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 1 - 326
Target Start/End: Original strand, 44679326 - 44679651
Alignment:
| Q |
1 |
aaaacgagtgagaacactatgagcttgctcttgtaaaggtgacatcaacttcatatttgatcctttgcacttctctaacattatatcgtggtcttctttt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44679326 |
aaaacgagtgagaacactatgagcttgctcttgtaaaggtgacatcaacttcatatttgatcctttgcacttctctaacattatatcgtggtcttctttt |
44679425 |
T |
|
| Q |
101 |
tgcttaatatcatcaattgctacatcaacctaaaattaatataaatgaattaatatggagttttgggaataaacattaatgcatcataccttccaaacta |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| |||||||||||||||||| |
|
|
| T |
44679426 |
tgcttaatatcatcaattgctacatcaacctaaaattaatataaatgaattaatatggagttttgtgaataaacatcaatgaatcataccttccaaacta |
44679525 |
T |
|
| Q |
201 |
acgagttcgaatataatgatcaatacaacatacctgctttgcaaagtcagttaaacttgtgtgagaattgatgaatcttttaatgaaagcattaatactc |
300 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44679526 |
acgagttctaatataatgatcaatacaacatacctgctttgcaaagtcagttaaacttgtgtgagaattgatgaatcttttaatgaaagcattaatactc |
44679625 |
T |
|
| Q |
301 |
tccgatcttcctgtggttgtcattcc |
326 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
44679626 |
tccgatcttcctgtggttgtcattcc |
44679651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 326
Target Start/End: Original strand, 23270566 - 23270891
Alignment:
| Q |
1 |
aaaacgagtgagaacactatgagcttgctcttgtaaaggtgacatcaacttcatatttgatcctttgcacttctctaacattatatcgtggtcttctttt |
100 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |
|
|
| T |
23270566 |
aaaacgagtaagaacactatgagcttgctcttgtaaaggtgacatcaacttcatatttgatcctttgcacttctctaacattatatcatggtcttcattt |
23270665 |
T |
|
| Q |
101 |
tgcttaatatcatcaattgctacatcaacctaaaattaatataaatgaattaatatggagttttgggaataaacattaatgcatcataccttccaaacta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
23270666 |
tgcttaatatcatcaattgctacatcaacctaaagttaatataaatgaattaatatggatgtttgggaataaacactaatgcatcataccttccaaacta |
23270765 |
T |
|
| Q |
201 |
acgagttcgaatataatgatcaatacaacatacctgctttgcaaagtcagttaaacttgtgtgagaattgatgaatcttttaatgaaagcattaatactc |
300 |
Q |
| |
|
||||||| |||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23270766 |
acgagttttaatataatgatcaatacaacttacatgctttgcaaagtcagttaaacttgtgtgagaattgatgaatcttttaatgaaagcattaatactc |
23270865 |
T |
|
| Q |
301 |
tccgatcttcctgtggttgtcattcc |
326 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
23270866 |
tccgatcttcctgtggttgtcattcc |
23270891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 282; Significance: 1e-158; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 326
Target Start/End: Complemental strand, 14199046 - 14198721
Alignment:
| Q |
1 |
aaaacgagtgagaacactatgagcttgctcttgtaaaggtgacatcaacttcatatttgatcctttgcacttctctaacattatatcgtggtcttctttt |
100 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14199046 |
aaaacgagtgagatcactatgagcttgctcttgtaaaggtgacatcaacttcatattttatcctttgcacttctctaacattatatcgtggtcttctttt |
14198947 |
T |
|
| Q |
101 |
tgcttaatatcatcaattgctacatcaacctaaaattaatataaatgaattaatatggagttttgggaataaacattaatgcatcataccttccaaacta |
200 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
14198946 |
tgtttaatatcatcaattgctacatcaacctaaagttaatataaatgaattaatatggatttttgggaataaacactaatgcatcataccttccaaacta |
14198847 |
T |
|
| Q |
201 |
acgagttcgaatataatgatcaatacaacatacctgctttgcaaagtcagttaaacttgtgtgagaattgatgaatcttttaatgaaagcattaatactc |
300 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
14198846 |
acgagttttaatataatgatcaatacaacatacctgctttgcaaagtcagttaaacttgggtgagaattgatgaatcttttaatgaaaacattaatactc |
14198747 |
T |
|
| Q |
301 |
tccgatcttcctgtggttgtcattcc |
326 |
Q |
| |
|
|||||||||| ||||||||||||||| |
|
|
| T |
14198746 |
tccgatcttcttgtggttgtcattcc |
14198721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 296
Target Start/End: Original strand, 18615080 - 18615376
Alignment:
| Q |
1 |
aaaacgagtgagaacactatgagcttgctcttgtaaaggtgacatcaacttcatatttgatcctttgcacttctctaacattatatcgtggtcttctttt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| |
|
|
| T |
18615080 |
aaaacgagtgagaacactatgagcttgctcttgtaaaggcgacatcaacttcatatttgatcctttgcatttctctaacattatatcgtgctcttctttt |
18615179 |
T |
|
| Q |
101 |
tgcttaatatcatcaattgctacatcaacctaaaattaatataaatgaattaatatggagttttgggaataaacattaatgcatcataccttccaaacta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||| |||||||| | ||| |||||||| |||||||||||||||| |||||| |
|
|
| T |
18615180 |
tgcttaatatcatcaattgctacatcaacctaaaattaatttaaataaattaatacacaagtttattaataaacactaatgcatcataccttttaaacta |
18615279 |
T |
|
| Q |
201 |
acgagttcgaatataatgatcaatacaacatacctgctttgcaaagtcagttaaacttgtgtgagaattgatgaatc-ttttaatgaaagcattaat |
296 |
Q |
| |
|
| |||| | |||||||||| |||||| ||||| || ||||||||||| |||||||||||||||||||||||||||| |||||||||| |||||||| |
|
|
| T |
18615280 |
atgagtactaatataatgaaaaatacatcatacatgttttgcaaagtctgttaaacttgtgtgagaattgatgaatctttttaatgaatgcattaat |
18615376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 77 - 146
Target Start/End: Complemental strand, 10880939 - 10880870
Alignment:
| Q |
77 |
aacattatatcgtggtcttctttttgcttaatatcatcaattgctacatcaacctaaaattaatataaat |
146 |
Q |
| |
|
||||||||||| || ||||||||||||||||||||||||||| | | ||||||||||||||||| ||||| |
|
|
| T |
10880939 |
aacattatatcatgttcttctttttgcttaatatcatcaattacaatatcaacctaaaattaatttaaat |
10880870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 224 - 323
Target Start/End: Complemental strand, 10880815 - 10880716
Alignment:
| Q |
224 |
tacaacatacctgctttgcaaagtcagttaaacttgtgtgagaattgatgaatcttttaatgaaagcattaatactctccgatcttcctgtggttgtcat |
323 |
Q |
| |
|
|||| |||||| | ||||| ||||||| ||||||| |||||||||||||||||||||| || || |||||||| |||| ||||||| ||||||||||| |
|
|
| T |
10880815 |
tacatcataccagttttgctaagtcagctaaacttttgtgagaattgatgaatcttttgataaatacattaatattctctgatcttctggtggttgtcat |
10880716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 13512336 - 13512192
Alignment:
| Q |
1 |
aaaacgagtgagaacactatgagcttgctcttgtaaaggtgacatcaacttcatatttgatcctttgcacttctctaacattatatcgtggtcttctttt |
100 |
Q |
| |
|
|||||| |||||||||| |||| ||||| ||| || ||| |||| | ||||||||| || |||| |||| |||||||||||||| |||| ||||||| |
|
|
| T |
13512336 |
aaaacgtgtgagaacaccatgaatttgctattgcaagggtaacataagcttcatattaattcttttgtacttttctaacattatatcatggtattctttt |
13512237 |
T |
|
| Q |
101 |
tgcttaatatcatcaattgctacatcaacctaaaattaatataaat |
146 |
Q |
| |
|
| |||||||||||||||||||| |||||| |||||||| ||||| |
|
|
| T |
13512236 |
t-cttaatatcatcaattgctaaatcaacaagaaattaatttaaat |
13512192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 238 - 323
Target Start/End: Complemental strand, 13512123 - 13512038
Alignment:
| Q |
238 |
tttgcaaagtcagttaaacttgtgtgagaattgatgaatcttttaatgaaagcattaatactctccgatcttcctgtggttgtcat |
323 |
Q |
| |
|
|||| ||||||| ||||||||||||||| ||| |||||| ||||||| || ||||| ||| ||| ||||||||||||||| |||| |
|
|
| T |
13512123 |
tttgtaaagtcacttaaacttgtgtgaggatttatgaatattttaataaatgcattgatattctatgatcttcctgtggttttcat |
13512038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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