View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17553_high_2 (Length: 421)

Name: NF17553_high_2
Description: NF17553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17553_high_2
NF17553_high_2
[»] chr7 (4 HSPs)
chr7 (59-398)||(35370149-35370492)
chr7 (184-396)||(35354834-35355046)
chr7 (184-396)||(35380840-35381052)
chr7 (1-45)||(35370115-35370159)
[»] chr4 (2 HSPs)
chr4 (184-394)||(19684484-19684694)
chr4 (184-396)||(19630130-19630343)
[»] chr8 (2 HSPs)
chr8 (304-369)||(2251396-2251461)
chr8 (304-369)||(2256736-2256801)


Alignment Details
Target: chr7 (Bit Score: 277; Significance: 1e-155; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 59 - 398
Target Start/End: Original strand, 35370149 - 35370492
Alignment:
Q  59 aaaatattatattgttattattggttgagatgaaagaaaaaagatcataggaagcaaggactttaattcatttttgtccattacataacaaaatttcatt 158  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35370149 aaaatattatattgttattattggttgagatgaaagaaaaaaaatcataggaagcaaggactttaattcatttttgtccattacataacaaaatttcatt 35370248  T
Q  159 tggaagtaacgttcnnnnnnnnnn----ggacagctgtggcacacccatttgcggagcatttgtcatattttacactttttgctataccaatgttaacaa 254  Q
    ||||||||||||||              ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  35370249 tggaagtaacgttcttttttttttttttggacagctgtggcacacccatttgccgagcatttgtcatattttacactttttgctataccaatgttaacaa 35370348  T
Q  255 cattgttcatcaaaaaatcatctgtggctgcactatatggctatatattttacattgatttcatgaacaatatgggtcattgcaactttgagttctttcc 354  Q
    |||||||||||||||||||||||||||||||||||||||||||| | |||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  35370349 cattgttcatcaaaaaatcatctgtggctgcactatatggctatgtctttttcattgatttcatgaacaatatgggtcattgcaactttgagttctttcc 35370448  T
Q  355 taagaagctcttctcatactttccccaattgaagtatctctctt 398  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  35370449 taagaagctcttctcatactttccccaattgaagtatctctctt 35370492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 184 - 396
Target Start/End: Original strand, 35354834 - 35355046
Alignment:
Q  184 gacagctgtggcacacccatttgcggagcatttgtcatattttacactttttgctataccaatgttaacaacattgttcatcaaaaaatcatctgtggct 283  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||    
T  35354834 gacagctgtgacacacccatttgcggagcatttgtcatattttacactttttgctataccaatgttgacaacattgttcatcaaaaaatcttctgtggct 35354933  T
Q  284 gcactatatggctatatattttacattgatttcatgaacaatatgggtcattgcaactttgagttctttcctaagaagctcttctcatactttccccaat 383  Q
    ||||||||||||||| | |||| |||||||||||||||||| |||||||||||||||||||||||| |||||||||| ||| |||| |||||||||   |    
T  35354934 gcactatatggctatgtctttttcattgatttcatgaacaacatgggtcattgcaactttgagttcattcctaagaaactcctctcttactttcccattt 35355033  T
Q  384 tgaagtatctctc 396  Q
    |||||||||||||    
T  35355034 tgaagtatctctc 35355046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 184 - 396
Target Start/End: Original strand, 35380840 - 35381052
Alignment:
Q  184 gacagctgtggcacacccatttgcggagcatttgtcatattttacactttttgctataccaatgttaacaacattgttcatcaaaaaatcatctgtggct 283  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||| || ||||||    
T  35380840 gacagctgtcgcacacccatttgcggagcatttgtcatattttacactttttgctatcccaatgttgacaacattgttcatcaataaatcttccgtggct 35380939  T
Q  284 gcactatatggctatatattttacattgatttcatgaacaatatgggtcattgcaactttgagttctttcctaagaagctcttctcatactttccccaat 383  Q
    ||| | ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |||||||||   |    
T  35380940 gcattgtatggttatatattttacattgatttcatgaacaatatgggtcattgcaactttgagttctttcctaagaaactcctctcttactttcccattt 35381039  T
Q  384 tgaagtatctctc 396  Q
    | |||||||||||    
T  35381040 taaagtatctctc 35381052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 35370115 - 35370159
Alignment:
Q  1 tgctagatctgttttccaaacattaagaaaatataaaatattata 45  Q
    |||||||||||||||||||||||||||| ||||||||||||||||    
T  35370115 tgctagatctgttttccaaacattaagataatataaaatattata 35370159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 103; Significance: 4e-51; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 184 - 394
Target Start/End: Original strand, 19684484 - 19684694
Alignment:
Q  184 gacagctgtggcacacccatttgcggagcatttgtcatattttacactttttgctataccaatgttaacaacattgttcatcaaaaaatcatctgtggct 283  Q
    |||||| ||| |||| |||||||| |||   ||| ||||||| |||||||||  |||||||||||| |||||||||||||| ||||||||   ||||| |    
T  19684484 gacagcggtgacacatccatttgctgagatgttggcatatttcacactttttcttataccaatgttgacaacattgttcatgaaaaaatcgagtgtggtt 19684583  T
Q  284 gcactatatggctatatattttacattgatttcatgaacaatatgggtcattgcaactttgagttctttcctaagaagctcttctcatactttccccaat 383  Q
    ||| | ||||| ||||| |||||||| ||||| |||||||| |||||||||||||| |||||||||||||||||||| |||||||| |||||||||||||    
T  19684584 gcattgtatggttatatcttttacatcgattttatgaacaacatgggtcattgcaattttgagttctttcctaagaaactcttctcctactttccccaat 19684683  T
Q  384 tgaagtatctc 394  Q
    |||||||||||    
T  19684684 tgaagtatctc 19684694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 184 - 396
Target Start/End: Complemental strand, 19630343 - 19630130
Alignment:
Q  184 gacagctgtggcacacccatttgcggagcatttgtcatattttacactttttgctataccaatgttaa-caacattgttcatcaaaaaatcatctgtggc 282  Q
    ||||||||||  |||||||||||| |||   ||| ||||||| |||||||||  ||| ||||| || | ||||| ||||| | |||||||| ||| | ||    
T  19630343 gacagctgtgatacacccatttgctgagatattggcatatttcacacttttttttatcccaatattgagcaacaatgttcgtaaaaaaatcgtctattgc 19630244  T
Q  283 tgcactatatggctatatattttacattgatttcatgaacaatatgggtcattgcaactttgagttctttcctaagaagctcttctcatactttccccaa 382  Q
    |||  | ||||| ||||| |||||||| ||||| |||||||| |||||||||||||| |||||||||||||||||||| |||||||| |||||||||| |    
T  19630243 tgcggtgtatggttatatcttttacatcgattttatgaacaacatgggtcattgcaattttgagttctttcctaagaaactcttctcctactttccccta 19630144  T
Q  383 ttgaagtatctctc 396  Q
    ||||||||||||||    
T  19630143 ttgaagtatctctc 19630130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 304 - 369
Target Start/End: Original strand, 2251396 - 2251461
Alignment:
Q  304 ttacattgatttcatgaacaatatgggtcattgcaactttgagttctttcctaagaagctcttctc 369  Q
    |||||||||||||||||| ||| ||||||| || || ||||||||| ||||||||||  |||||||    
T  2251396 ttacattgatttcatgaataatttgggtcactgtaattttgagttcattcctaagaaagtcttctc 2251461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 304 - 369
Target Start/End: Complemental strand, 2256801 - 2256736
Alignment:
Q  304 ttacattgatttcatgaacaatatgggtcattgcaactttgagttctttcctaagaagctcttctc 369  Q
    |||||||||||||||||| ||| ||||||| || || ||||||||| ||||||||||  |||||||    
T  2256801 ttacattgatttcatgaataatttgggtcactgtaattttgagttcattcctaagaaagtcttctc 2256736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University