View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17553_low_3 (Length: 414)
Name: NF17553_low_3
Description: NF17553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17553_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 12 - 398
Target Start/End: Complemental strand, 39885549 - 39885163
Alignment:
| Q |
12 |
atgaacctccacaaacatgaaaatgtcgtgtatactaaaatttgctgaagatttctatgatacagacatatggatctttctgaaacaacaatccaatatc |
111 |
Q |
| |
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||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39885549 |
atgaacctccacaaacacgaaaatgtcttgtatactaaaatttgctgaagatttctatgatacagacatatggatctttctgaaacaacaatccaatatc |
39885450 |
T |
|
| Q |
112 |
tttcaaagcatgaaacggaaggtgcaaaaatcagtggccacaaatctgtcatcttaatataagatctaacttgttagaagccaccgaaaatgatacaaat |
211 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39885449 |
tttcaaagcatgaaacggaaggtgctaaaatcagtggccacaaatctgtcatcttaatataagatctaacttgttagaagccaccgaaaatgatacaaat |
39885350 |
T |
|
| Q |
212 |
gagnnnnnnntatcaaacaatagatgtaataattagttggacaaagtgacccatcaacatagaaaatgatagtattgttctgcacaaagtgtgttactat |
311 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| |
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| T |
39885349 |
gagaaaaaaatatcaaacaatagatgtaataattagttggacaaagtgacccatcaacaaagaaaatgatagtattgttctgcacaaagtgtgatactat |
39885250 |
T |
|
| Q |
312 |
atgctttaatttcttccttttgtgaaaccaagtatgaaattaccattccataacggggactaaggtgtgtatttgaaaggaccacat |
398 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
39885249 |
atgctttaatttcttccttttgtgaaaccaagtatgaaattaccattccataacggggactaaggtgtgtttttgaaaggaccacat |
39885163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 327; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 12 - 398
Target Start/End: Complemental strand, 22308611 - 22308224
Alignment:
| Q |
12 |
atgaacctccacaaacatgaaaatgtcgtgtatactaaaatttgctgaagatttctatgatacagacatatggatctttctgaaacaacaatccaatatc |
111 |
Q |
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||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22308611 |
atgaacctctacaaacatgaaaatgtcttgtatactaaaatttgctgaagatttctatgatacagacatatggatctttctgaaacaacaatccaatatc |
22308512 |
T |
|
| Q |
112 |
tttcaaagcatgaaacggaaggtgcaaaaatcagtggccacaaatctgtcatcttaatataagatctaacttgttagaagccaccgaaaatgatacaaat |
211 |
Q |
| |
|
||||||||||| ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22308511 |
tttcaaagcatcaaacgaaaggtgctaaaatcagtggccacaaatctgtcatcttaatataagatctaacttgttagaagccaccgaaaatgatacaaat |
22308412 |
T |
|
| Q |
212 |
gagnnnnnnntatcaaacaatagatgtaataatta-gttggacaaagtgacccatcaacatagaaaatgatagtattgttctgcacaaagtgtgttacta |
310 |
Q |
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||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
22308411 |
gagaaaaaaatatcaaacaatagatgtaataattaggttggacaaagtgacccatcaacatagaaaatgatagtattgttctgcacaaagtgtgatacta |
22308312 |
T |
|
| Q |
311 |
tatgctttaatttcttccttttgtgaaaccaagtatgaaattaccattccataacggggactaaggtgtgtatttgaaaggaccacat |
398 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
22308311 |
tatgctttaatttcttccttttgtaaaaccaagtatgaaattaccattccataacggggactaaggtgtgtttttgaaaggaccacat |
22308224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 266 - 398
Target Start/End: Original strand, 32457746 - 32457873
Alignment:
| Q |
266 |
caacatagaaaatgatagtattgttctgcacaaagtgtgttactatatgctttaatttcttccttttgtgaaaccaagtatgaaattaccattccataac |
365 |
Q |
| |
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||||| || ||| |||||||||||||||| ||||||||| |||||||| || |||||||||||||||||| |||| ||||||||||||||||||||| |
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| T |
32457746 |
caacaaagcaaaggatagtattgttctgctcaaagtgtgatactatat---tt--tttcttccttttgtgaaatcaagaatgaaattaccattccataac |
32457840 |
T |
|
| Q |
366 |
ggggactaaggtgtgtatttgaaaggaccacat |
398 |
Q |
| |
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||| |||||| ||||| || |||||||| |||| |
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| T |
32457841 |
gggtactaagatgtgttttcgaaaggacgacat |
32457873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 15 - 79
Target Start/End: Original strand, 32457683 - 32457747
Alignment:
| Q |
15 |
aacctccacaaacatgaaaatgtcgtgtatactaaaatttgctgaagatttctatgatacagaca |
79 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||| |||| |||||||||||||| |||||| |
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| T |
32457683 |
aacctccacaaacatgaaaatgtcttgtatactaaaatgtgctcaagatttctatgatgcagaca |
32457747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 293; Significance: 1e-164; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 12 - 398
Target Start/End: Original strand, 37349320 - 37349708
Alignment:
| Q |
12 |
atgaacctccacaaacatgaaaatgtcgtgtatactaaaatttgctgaagatttctatgatacagacatatggatctttctgaaacaacaatccaatatc |
111 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37349320 |
atgaacctccacaaacatgaaaatgtcttgtatactaaaatttgctcaagatttctatgatacagacatatggatctttctgaaacaacaatccaatatc |
37349419 |
T |
|
| Q |
112 |
tttcaaagcatgaaacggaaggtgcaaaaatcagtggccacaaatctgtcatcttaatataagatctaacttgttagaagccaccgaaaatgatacaaat |
211 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
37349420 |
tttcaaagcatgaaacggaaggtgctaaaatcagtggtcacaaatctgtcatcttaatataagatctaacttgttagaagccaccaaaaatgatacaaat |
37349519 |
T |
|
| Q |
212 |
gag--nnnnnnntatcaaacaatagatgtaataattagttggacaaagtgacccatcaacatagaaaatgatagtattgttctgcacaaagtgtgttact |
309 |
Q |
| |
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||| ||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| |||| ||| || | |
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| T |
37349520 |
gagaaaaaaaaatatcaaataatagatgtaataattagttggacaaagtgacccatcaacaaagaaaatgatagtatttttctgcagaaagcgtgataat |
37349619 |
T |
|
| Q |
310 |
atatgctttaatttcttccttttgtgaaaccaagtatgaaattaccattccataacggggactaaggtgtgtatttgaaaggaccacat |
398 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||| ||||||| |
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|
| T |
37349620 |
atatgctttaatttcttccttttgtgaaaccaagtatgaaattaccattccataacggggactaaagtgtgtttctgaaagcaccacat |
37349708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 97 - 398
Target Start/End: Original strand, 13419491 - 13419792
Alignment:
| Q |
97 |
caacaatccaatatctttcaaagcatgaaacggaaggtgcaaaaatcagtggccacaaatctgtcatcttaatataagatctaacttgttagaagccacc |
196 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13419491 |
caacaatccaatatctttcaaagcatgaaacggaaggtgctaaaatcagtggccacaaatctgtcatcttaatataagatctaacttgttagaagccacc |
13419590 |
T |
|
| Q |
197 |
gaaaatgatacaaatgagnnnnnnntatcaaacaatagatgtaataattagttggacaaagtgacccatcaacatagaaaatgatagtattgttctgcac |
296 |
Q |
| |
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|||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
13419591 |
gaaaatgatacaaatgagaaataaataacaaacaatagatgtaataattagttggacaaagtgacccatcaacaaagaaaatgatagtattgttctgcag |
13419690 |
T |
|
| Q |
297 |
aaagtgtgttactatatgctttaatttcttccttttgtgaaaccaagtatgaaattaccattccataacggggactaaggtgtgtatttgaaaggaccac |
396 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
13419691 |
aaagtgtgatactatatgctttaatttcttccttttgtgaaaccatgtatgaaattaccattccataacggggactaaggtgtgtttttgaaaggaccac |
13419790 |
T |
|
| Q |
397 |
at |
398 |
Q |
| |
|
|| |
|
|
| T |
13419791 |
at |
13419792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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