View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17553_low_4 (Length: 362)
Name: NF17553_low_4
Description: NF17553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17553_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 27 - 347
Target Start/End: Original strand, 43185625 - 43185944
Alignment:
| Q |
27 |
atttcacgcattcacacggtcaacacatcagtcttcgtatcatcaagattggacagttttgttttaaaatttgatattttaaattaaaacaaaatatgca |
126 |
Q |
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| T |
43185625 |
atttcacgcattcacacggtcaacacatcagtcttcctatcatcaagattggacagttttgttttaaaatttg-tattttaaattaaaacaaaatatgca |
43185723 |
T |
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| Q |
127 |
ttgaaatttgtatcctccacctcacaatcacaaatgtactgaccgcgtgaatgcacataaaattgttgaccgcatacgatttgaattcctgggtttcagg |
226 |
Q |
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| T |
43185724 |
ttgaaatttgtatcctccacctcacaatcacaaatgtactgactgcgtgaatgcacataaaattgttgaccgcatacgatttgaattcttgggtttcaag |
43185823 |
T |
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| Q |
227 |
atggccatggttaagatccatgactaagcttacataattttttcacatattaccaccaacgaaattatcatatcagaagcgggattgaaatccaatttct |
326 |
Q |
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| T |
43185824 |
atggccatggttaagatccatgactaagcttacataattttttcacatattaccaccaacgaaattatcatatcagaagcgggattgaaatccaatttct |
43185923 |
T |
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| Q |
327 |
tataagatctaagttgaatct |
347 |
Q |
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| T |
43185924 |
tataagatctaagttgaatct |
43185944 |
T |
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