View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17554_high_11 (Length: 375)
Name: NF17554_high_11
Description: NF17554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17554_high_11 |
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Alignment Details
Target: chr4 (Bit Score: 298; Significance: 1e-167; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 13 - 360
Target Start/End: Complemental strand, 30381817 - 30381477
Alignment:
| Q |
13 |
aatataaatacaaaaagagagtactaaccgtgatgataaacaacctccatgctatccgttgtaagcaacaaagaaaacttagttggagggtcaagcacaa |
112 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
30381817 |
aataaaaatacaaaaagagagtactaaccgtgatgataaacaacctccatgctat-------aagcaacaaagaaaacttagttggagggtcaagcacaa |
30381725 |
T |
|
| Q |
113 |
ttaatagaccgttcgtagactttgtattaagcttggtaaaaagtcaacacacatattatcctatttgagagtgtgacatagttgaaaagccggcacacat |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30381724 |
ttaatagaccgttcgtagactttgtattaagcttggtaaaaagtcaacacatatattatcctatttgagagtgtgacatagttgaaaagccggcacacat |
30381625 |
T |
|
| Q |
213 |
atccatagcggtgagcgtaaacaccaacgaatttaaatctcatacattaattcggagatttcggcatgaagaatactcgagtagtcaatattataataga |
312 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
30381624 |
atccatagcggtgagcgtaaacaccaacgaatttaaatctcatgcattaattcagagatttcggcatgaagaatactcgagtagtcaatattatgataga |
30381525 |
T |
|
| Q |
313 |
aaccacacaagaattgtccatcaaagtctctaattaagccatcaaatt |
360 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
30381524 |
aaccacacaagaattgtccatcaaagtctctaattaaaccatcaaatt |
30381477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 236 - 359
Target Start/End: Original strand, 52666322 - 52666445
Alignment:
| Q |
236 |
ccaacgaatttaaatctcatacattaattcggagatttcggcatgaagaatactcgagtagtcaatattataatagaaaccacacaagaattgtccatca |
335 |
Q |
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| T |
52666322 |
ccaacaaatttgaatcgcatgcattaatgccaagatttcggcatgaatggtatttgagtagccaatattaccatgaaagccacacataaattgtccatcg |
52666421 |
T |
|
| Q |
336 |
aagtctctaattaagccatcaaat |
359 |
Q |
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|||||||||||||||||| ||||| |
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| T |
52666422 |
aagtctctaattaagccaccaaat |
52666445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 236 - 348
Target Start/End: Complemental strand, 1808130 - 1808018
Alignment:
| Q |
236 |
ccaacgaatttaaatctcatacattaattcggagatttcggcatgaagaatactcgagtagtcaatattataatagaaaccacacaagaattgtccatca |
335 |
Q |
| |
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||||| ||||| |||| ||||||||| | | |||||||||||||||||||| | ||||||||||||||| || || ||||||| |||||||||||| |
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| T |
1808130 |
ccaacaaatttgaatcccatacattattgccaagatttcggcatgaagaatatttgagtagtcaatattaccatgaaagccacacataaattgtccatca |
1808031 |
T |
|
| Q |
336 |
aagtctctaatta |
348 |
Q |
| |
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|| |||||||||| |
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| T |
1808030 |
aaatctctaatta |
1808018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 153 - 201
Target Start/End: Complemental strand, 1808314 - 1808266
Alignment:
| Q |
153 |
aagtcaacacacatattatcctatttgagagtgtgacatagttgaaaag |
201 |
Q |
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|||||| ||||||||||| ||| | |||||||||||||||||||||||| |
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| T |
1808314 |
aagtcagcacacatattaccctctctgagagtgtgacatagttgaaaag |
1808266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 153 - 201
Target Start/End: Original strand, 14624019 - 14624067
Alignment:
| Q |
153 |
aagtcaacacacatattatcctatttgagagtgtgacatagttgaaaag |
201 |
Q |
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|||||||||||||||||| ||| ||||| |||||||||||||||||| |
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| T |
14624019 |
aagtcaacacacatattaccctccctgagaatgtgacatagttgaaaag |
14624067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 127 - 201
Target Start/End: Complemental strand, 30729589 - 30729514
Alignment:
| Q |
127 |
gtagactttgtattaagcttgg-taaaaagtcaacacacatattatcctatttgagagtgtgacatagttgaaaag |
201 |
Q |
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|||| |||||| |||||||||| |||||| ||| ||||||||||| ||| |||||||||||||||||||||||| |
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| T |
30729589 |
gtagtctttgttttaagcttggctaaaaaatcagcacacatattaccctccatgagagtgtgacatagttgaaaag |
30729514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 270 - 359
Target Start/End: Original strand, 8194846 - 8194935
Alignment:
| Q |
270 |
atttcggcatgaagaatactcgagtagtcaatattataatagaaaccacacaagaattgtccatcaaagtctctaattaagccatcaaat |
359 |
Q |
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|||||||| ||||||||| |||||||| |||||||| | |||||| || ||||||||||||| ||| ||||||||||||| ||||| |
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| T |
8194846 |
atttcggcgtgaagaatattcgagtagccaatattaccgttaaaaccatgcaggaattgtccatcagagtttctaattaagccaccaaat |
8194935 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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