View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17554_high_17 (Length: 235)
Name: NF17554_high_17
Description: NF17554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17554_high_17 |
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Alignment Details
Target: chr8 (Bit Score: 99; Significance: 5e-49; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 18 - 124
Target Start/End: Complemental strand, 45181806 - 45181700
Alignment:
| Q |
18 |
cattaaacaattatgttttgccttttaagattttcagatggaacctacaaattataatcagtaattacctctatcaacgtatgcttacttaatttaccta |
117 |
Q |
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| T |
45181806 |
cattaaacaattatgttttgccttttaagattttcagatggaacgtacaaattataatcagtaattacctctatcaacgtatgcttacttgatttaccta |
45181707 |
T |
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| Q |
118 |
cttttac |
124 |
Q |
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| T |
45181706 |
cttttac |
45181700 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 25 - 202
Target Start/End: Complemental strand, 45174917 - 45174745
Alignment:
| Q |
25 |
caattatgttttgcctttt-aagattttcagatggaacctacaaattataatcagtaattacctctatcaac-gtatgcttacttaatttacctactttt |
122 |
Q |
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| T |
45174917 |
caattatgtttttcctttttaagattttcagttggaacctacaaattgcaatc--tagctacctctctaaaccgcttgctgacttaatttacctactttt |
45174820 |
T |
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| Q |
123 |
acaaaggactatattatattgcaactaggtggtaccgtgcacctgaactatgtggttcttttttcacaaaagtaagtttt |
202 |
Q |
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| T |
45174819 |
accaaggactatgtt-----gcaactaggtggtaccgtgcacctgaactatgtggttcttttttctcaaaagtaagtttt |
45174745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 155 - 224
Target Start/End: Complemental strand, 45181702 - 45181633
Alignment:
| Q |
155 |
taccgtgcacctgaactatgtggttcttttttcacaaaagtaagttttttgtttgacatcatattttctt |
224 |
Q |
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| T |
45181702 |
taccgtgcacctgaactatgtggttcttttttcacaaaagtaagttttttgtttgacatcatattttctt |
45181633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 141 - 198
Target Start/End: Complemental strand, 29962023 - 29961966
Alignment:
| Q |
141 |
ttgcaactaggtggtaccgtgcacctgaactatgtggttcttttttcacaaaagtaag |
198 |
Q |
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| T |
29962023 |
ttgcgactcggtggtatcgtgcacctgaactatgtggttcttttttctcaaaagtaag |
29961966 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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