View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17554_high_8 (Length: 491)

Name: NF17554_high_8
Description: NF17554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17554_high_8
NF17554_high_8
[»] chr6 (5 HSPs)
chr6 (111-475)||(587119-587480)
chr6 (1-104)||(587517-587620)
chr6 (350-384)||(31434440-31434474)
chr6 (350-383)||(1008051-1008084)
chr6 (350-383)||(5258147-5258180)
[»] chr7 (5 HSPs)
chr7 (130-217)||(32057965-32058052)
chr7 (129-221)||(26799298-26799390)
chr7 (32-101)||(32057854-32057924)
chr7 (350-383)||(40630684-40630717)
chr7 (33-77)||(26799236-26799280)
[»] chr8 (1 HSPs)
chr8 (350-383)||(21121395-21121428)
[»] chr4 (2 HSPs)
chr4 (350-383)||(29399054-29399087)
chr4 (350-383)||(32633405-32633438)
[»] chr1 (5 HSPs)
chr1 (350-383)||(4001454-4001487)
chr1 (350-383)||(4318844-4318877)
chr1 (350-383)||(7133301-7133334)
chr1 (350-383)||(37311754-37311787)
chr1 (350-383)||(41165532-41165565)


Alignment Details
Target: chr6 (Bit Score: 299; Significance: 1e-168; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 111 - 475
Target Start/End: Complemental strand, 587480 - 587119
Alignment:
Q  111 tgtatcattcatgcccaactccatgttcatatttaagtcaatccaattctgcaaatttgcttcaaaaaagttctctctttgattaatcctaattgtattc 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  587480 tgtatcattcatgcccaactccatgttcatatttaagtcaatccaattctgcaaatttgcttcaaaaaagttctctctttgattaatcctaattgtattc 587381  T
Q  211 aaccatataccgcaagcggacaatattctcgaaagacatgcaacatattttcaacatctccacaatgataacaataaggatgtccaatccgcatatagtt 310  Q
    ||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||  ||||||||||    
T  587380 aaccatataccgcaagcggacaacattctcgaaagacatgcaatatattttcaacatctcaacaatgataacaataaggatgtccaattggcatatagtt 587281  T
Q  311 cagcctgcaattcgtcatgagacggtcatgatgaagcaaccacttagtgggaaaagtcttggttgttgttgtttgaattaaatctaacttctaggaacca 410  Q
    ||  |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| |||||||||||   ||||||||| |||||    
T  587280 caatctgcaattcgtcatgagacggtcatgatgaagcagccacttagtggaaaaagtcttggttgttgttatttgaattaaa---aacttctagaaacca 587184  T
Q  411 caatttatattgaccagaaattctcgagcactaaattttgataaagaaatattctggatcaaagt 475  Q
    |||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||    
T  587183 caatttatattgaccagaaattctcgagcactaaatttggatatagaaatattctggatcaaagt 587119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 587620 - 587517
Alignment:
Q  1 tgattgtccatgtaacaattaaccctccttgttccaagagttaagaggcattgtagcttcactatcatgactcaactgtttctccaagaccacaaggcat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  587620 tgattgtccatgtaacaattaaccctccttgttccaagagttaagaggcattgtagcttcactatgatgactcaactgtttctccaagaccacaaggcat 587521  T
Q  101 gaca 104  Q
    ||||    
T  587520 gaca 587517  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 350 - 384
Target Start/End: Complemental strand, 31434474 - 31434440
Alignment:
Q  350 ccacttagtgggaaaagtcttggttgttgttgttt 384  Q
    ||||||||||||| |||||||||||||||||||||    
T  31434474 ccacttagtgggataagtcttggttgttgttgttt 31434440  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 350 - 383
Target Start/End: Complemental strand, 1008084 - 1008051
Alignment:
Q  350 ccacttagtgggaaaagtcttggttgttgttgtt 383  Q
    ||||||||||||||||| ||||||||||||||||    
T  1008084 ccacttagtgggaaaaggcttggttgttgttgtt 1008051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 350 - 383
Target Start/End: Complemental strand, 5258180 - 5258147
Alignment:
Q  350 ccacttagtgggaaaagtcttggttgttgttgtt 383  Q
    ||||||||||||| ||||||||||||||||||||    
T  5258180 ccacttagtgggataagtcttggttgttgttgtt 5258147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 64; Significance: 9e-28; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 130 - 217
Target Start/End: Original strand, 32057965 - 32058052
Alignment:
Q  130 tccatgttcatatttaagtcaatccaattctgcaaatttgcttcaaaaaagttctctctttgattaatcctaattgtattcaaccata 217  Q
    |||||||||||||||||| ||||||||| |||||||| ||||||||||||||||||||||||||||||  ||| ||||||||||||||    
T  32057965 tccatgttcatatttaagccaatccaatgctgcaaatctgcttcaaaaaagttctctctttgattaataataactgtattcaaccata 32058052  T

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Target: chr7; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 129 - 221
Target Start/End: Original strand, 26799298 - 26799390
Alignment:
Q  129 ctccatgttcatatttaagtcaatccaattctgcaaatttgcttcaaaaaagttctctctttgattaatcctaattgtattcaaccatatacc 221  Q
    ||||||| ||| ||||||||||||||||| |||||||| ||||||||||||| ||| |||||||| ||| | || ||||||||||||||||||    
T  26799298 ctccatgctcaaatttaagtcaatccaatgctgcaaatatgcttcaaaaaagctctttctttgataaataccaactgtattcaaccatatacc 26799390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 32 - 101
Target Start/End: Original strand, 32057854 - 32057924
Alignment:
Q  32 ttccaagagttaagaggcattgtagcttcactatcatgactcaact-gtttctccaagaccacaaggcatg 101  Q
    ||||| |||||||||| ||| ||||||| |||||||| |||||||| |||||||||  |||||||||||||    
T  32057854 ttccatgagttaagagacatcgtagctttactatcataactcaacttgtttctccataaccacaaggcatg 32057924  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 350 - 383
Target Start/End: Original strand, 40630684 - 40630717
Alignment:
Q  350 ccacttagtgggaaaagtcttggttgttgttgtt 383  Q
    ||||||||||||||||| ||||||||||||||||    
T  40630684 ccacttagtgggaaaaggcttggttgttgttgtt 40630717  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 33 - 77
Target Start/End: Original strand, 26799236 - 26799280
Alignment:
Q  33 tccaagagttaagaggcattgtagcttcactatcatgactcaact 77  Q
    |||| ||||||||||||||  |||||| |||||||||||||||||    
T  26799236 tccacgagttaagaggcatcatagcttgactatcatgactcaact 26799280  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 350 - 383
Target Start/End: Original strand, 21121395 - 21121428
Alignment:
Q  350 ccacttagtgggaaaagtcttggttgttgttgtt 383  Q
    ||||||||||||||||| ||||||||||||||||    
T  21121395 ccacttagtgggaaaaggcttggttgttgttgtt 21121428  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 350 - 383
Target Start/End: Original strand, 29399054 - 29399087
Alignment:
Q  350 ccacttagtgggaaaagtcttggttgttgttgtt 383  Q
    ||||||||||||||||| ||||||||||||||||    
T  29399054 ccacttagtgggaaaaggcttggttgttgttgtt 29399087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 350 - 383
Target Start/End: Complemental strand, 32633438 - 32633405
Alignment:
Q  350 ccacttagtgggaaaagtcttggttgttgttgtt 383  Q
    ||||||||||||||||| ||||||||||||||||    
T  32633438 ccacttagtgggaaaaggcttggttgttgttgtt 32633405  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 350 - 383
Target Start/End: Complemental strand, 4001487 - 4001454
Alignment:
Q  350 ccacttagtgggaaaagtcttggttgttgttgtt 383  Q
    ||||||||||||||||| ||||||||||||||||    
T  4001487 ccacttagtgggaaaaggcttggttgttgttgtt 4001454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 350 - 383
Target Start/End: Complemental strand, 4318877 - 4318844
Alignment:
Q  350 ccacttagtgggaaaagtcttggttgttgttgtt 383  Q
    ||||||||||||||||| ||||||||||||||||    
T  4318877 ccacttagtgggaaaaggcttggttgttgttgtt 4318844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 350 - 383
Target Start/End: Complemental strand, 7133334 - 7133301
Alignment:
Q  350 ccacttagtgggaaaagtcttggttgttgttgtt 383  Q
    ||||||||||||||||| ||||||||||||||||    
T  7133334 ccacttagtgggaaaaggcttggttgttgttgtt 7133301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 350 - 383
Target Start/End: Complemental strand, 37311787 - 37311754
Alignment:
Q  350 ccacttagtgggaaaagtcttggttgttgttgtt 383  Q
    ||||||||||||||||| ||||||||||||||||    
T  37311787 ccacttagtgggaaaaggcttggttgttgttgtt 37311754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 350 - 383
Target Start/End: Original strand, 41165532 - 41165565
Alignment:
Q  350 ccacttagtgggaaaagtcttggttgttgttgtt 383  Q
    ||||||||||||||||| ||||||||||||||||    
T  41165532 ccacttagtgggaaaaggcttggttgttgttgtt 41165565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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