View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17554_high_9 (Length: 409)

Name: NF17554_high_9
Description: NF17554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17554_high_9
NF17554_high_9
[»] chr2 (37 HSPs)
chr2 (189-391)||(1810534-1810736)
chr2 (13-149)||(1810740-1810876)
chr2 (172-285)||(33941884-33941998)
chr2 (181-279)||(10563548-10563647)
chr2 (169-253)||(33256748-33256832)
chr2 (175-280)||(680483-680589)
chr2 (169-230)||(787363-787424)
chr2 (168-225)||(1494423-1494480)
chr2 (168-286)||(1625874-1625994)
chr2 (209-257)||(43985021-43985069)
chr2 (206-282)||(45229490-45229566)
chr2 (200-286)||(41851509-41851596)
chr2 (169-285)||(26626848-26626966)
chr2 (209-254)||(3067397-3067442)
chr2 (170-223)||(5902528-5902581)
chr2 (175-228)||(9595291-9595344)
chr2 (169-254)||(35378994-35379079)
chr2 (200-284)||(40279173-40279258)
chr2 (172-252)||(26857091-26857171)
chr2 (169-257)||(43065428-43065516)
chr2 (209-279)||(656795-656866)
chr2 (170-233)||(1647264-1647327)
chr2 (200-286)||(3611200-3611287)
chr2 (169-247)||(43570428-43570506)
chr2 (168-257)||(43279505-43279595)
chr2 (170-228)||(44606089-44606147)
chr2 (168-225)||(4350726-4350783)
chr2 (169-254)||(8017441-8017526)
chr2 (170-247)||(33192216-33192293)
chr2 (169-246)||(35378510-35378587)
chr2 (200-252)||(1056362-1056414)
chr2 (192-240)||(3235385-3235433)
chr2 (209-257)||(6988119-6988167)
chr2 (169-228)||(13325603-13325663)
chr2 (172-286)||(18066102-18066218)
chr2 (197-257)||(40279411-40279471)
chr2 (169-233)||(43529836-43529900)
[»] chr4 (25 HSPs)
chr4 (168-279)||(2996554-2996666)
chr4 (189-257)||(6978960-6979028)
chr4 (168-286)||(28300276-28300395)
chr4 (209-286)||(17884042-17884120)
chr4 (170-286)||(41336734-41336852)
chr4 (169-257)||(21731633-21731722)
chr4 (209-286)||(47800604-47800675)
chr4 (209-286)||(51630085-51630163)
chr4 (169-257)||(17822842-17822931)
chr4 (209-254)||(18011878-18011923)
chr4 (208-257)||(30668383-30668432)
chr4 (189-257)||(11264305-11264373)
chr4 (179-254)||(23819096-23819171)
chr4 (214-288)||(29778767-29778842)
chr4 (178-240)||(44249306-44249368)
chr4 (217-286)||(56480322-56480392)
chr4 (170-284)||(679692-679809)
chr4 (200-240)||(51210463-51210504)
chr4 (206-289)||(437259-437343)
chr4 (200-240)||(1312862-1312902)
chr4 (173-225)||(7205800-7205852)
chr4 (189-257)||(19250550-19250618)
chr4 (189-233)||(29467622-29467666)
chr4 (209-253)||(32421277-32421321)
chr4 (201-257)||(50400491-50400547)
[»] chr5 (30 HSPs)
chr5 (209-284)||(10272449-10272525)
chr5 (168-254)||(13604826-13604912)
chr5 (170-282)||(16937861-16937975)
chr5 (170-285)||(2568632-2568749)
chr5 (169-254)||(17258861-17258946)
chr5 (168-257)||(17368680-17368769)
chr5 (169-284)||(39105440-39105557)
chr5 (189-257)||(5284446-5284514)
chr5 (174-254)||(21768180-21768260)
chr5 (168-233)||(4659210-4659275)
chr5 (209-273)||(36318761-36318826)
chr5 (189-257)||(2468435-2468503)
chr5 (178-257)||(32703263-32703342)
chr5 (168-255)||(37611192-37611279)
chr5 (168-255)||(37787922-37788009)
chr5 (173-286)||(1619064-1619177)
chr5 (175-233)||(11700362-11700420)
chr5 (169-281)||(16457956-16458070)
chr5 (168-254)||(36639529-36639615)
chr5 (170-278)||(6587086-6587195)
chr5 (209-273)||(7907868-7907933)
chr5 (180-233)||(14331395-14331448)
chr5 (169-233)||(499709-499773)
chr5 (209-257)||(2880565-2880613)
chr5 (170-254)||(7674655-7674739)
chr5 (200-252)||(7984978-7985030)
chr5 (168-240)||(8089957-8090029)
chr5 (169-257)||(17827528-17827616)
chr5 (209-280)||(35445861-35445933)
chr5 (181-257)||(40205064-40205140)
[»] chr3 (28 HSPs)
chr3 (166-257)||(39980733-39980825)
chr3 (169-286)||(21367641-21367760)
chr3 (169-288)||(402519-402640)
chr3 (172-248)||(23808045-23808121)
chr3 (209-257)||(36887508-36887556)
chr3 (174-221)||(24624250-24624297)
chr3 (166-233)||(53952076-53952143)
chr3 (189-286)||(52618977-52619075)
chr3 (206-286)||(35959471-35959552)
chr3 (179-240)||(36139899-36139960)
chr3 (170-282)||(45541549-45541662)
chr3 (201-281)||(47132310-47132391)
chr3 (172-228)||(5391912-5391968)
chr3 (168-228)||(47132027-47132087)
chr3 (170-277)||(54837013-54837121)
chr3 (174-233)||(27290884-27290943)
chr3 (169-247)||(27896148-27896226)
chr3 (200-254)||(35394507-35394561)
chr3 (170-228)||(39723219-39723277)
chr3 (169-286)||(48286788-48286906)
chr3 (198-255)||(901930-901987)
chr3 (169-254)||(20502046-20502131)
chr3 (169-254)||(30573892-30573977)
chr3 (197-254)||(33972740-33972797)
chr3 (179-236)||(36101593-36101650)
chr3 (206-286)||(36631066-36631147)
chr3 (174-286)||(39602193-39602305)
chr3 (176-252)||(16790364-16790439)
[»] chr1 (42 HSPs)
chr1 (168-254)||(37811859-37811945)
chr1 (209-280)||(43332464-43332536)
chr1 (200-286)||(27820346-27820433)
chr1 (171-267)||(35925686-35925780)
chr1 (200-280)||(51695504-51695585)
chr1 (168-248)||(28689429-28689509)
chr1 (170-284)||(1565514-1565629)
chr1 (174-233)||(11639399-11639458)
chr1 (169-282)||(17603361-17603476)
chr1 (170-257)||(37842334-37842421)
chr1 (203-284)||(7472287-7472369)
chr1 (164-257)||(38503437-38503531)
chr1 (209-258)||(3924627-3924676)
chr1 (170-239)||(7575678-7575746)
chr1 (175-248)||(19092368-19092440)
chr1 (181-254)||(27140485-27140558)
chr1 (169-233)||(10439714-10439778)
chr1 (169-282)||(3233992-3234107)
chr1 (200-255)||(27820205-27820260)
chr1 (172-247)||(37593665-37593740)
chr1 (170-233)||(43338144-43338207)
chr1 (169-252)||(44422708-44422791)
chr1 (197-252)||(52286687-52286742)
chr1 (180-254)||(4202140-4202214)
chr1 (207-284)||(6556947-6557025)
chr1 (170-228)||(29723522-29723580)
chr1 (169-239)||(31517718-31517788)
chr1 (209-286)||(34290210-34290288)
chr1 (207-257)||(37769676-37769726)
chr1 (200-254)||(45975697-45975751)
chr1 (180-233)||(6292521-6292574)
chr1 (169-246)||(10280664-10280741)
chr1 (206-251)||(47432105-47432150)
chr1 (172-240)||(4768810-4768878)
chr1 (170-254)||(7136977-7137061)
chr1 (169-233)||(10199386-10199450)
chr1 (209-257)||(26779943-26779991)
chr1 (181-237)||(30815643-30815699)
chr1 (197-233)||(33975598-33975634)
chr1 (169-229)||(35669004-35669064)
chr1 (169-237)||(38170668-38170736)
chr1 (209-249)||(51190860-51190900)
[»] chr7 (22 HSPs)
chr7 (206-286)||(17944358-17944439)
chr7 (169-282)||(19302540-19302651)
chr7 (174-286)||(12110334-12110447)
chr7 (167-220)||(19719047-19719100)
chr7 (204-252)||(12792576-12792624)
chr7 (174-246)||(27626106-27626178)
chr7 (172-255)||(25670567-25670650)
chr7 (175-221)||(12834946-12834992)
chr7 (169-255)||(28691813-28691899)
chr7 (169-231)||(33894657-33894719)
chr7 (170-228)||(43219623-43219681)
chr7 (174-228)||(44808191-44808245)
chr7 (175-257)||(46104551-46104633)
chr7 (168-225)||(13960700-13960757)
chr7 (169-257)||(19214383-19214472)
chr7 (209-285)||(28613552-28613629)
chr7 (206-286)||(46280287-46280368)
chr7 (170-254)||(9050642-9050725)
chr7 (206-285)||(20269551-20269631)
chr7 (189-257)||(44151478-44151546)
chr7 (169-233)||(46082064-46082128)
chr7 (213-257)||(48917368-48917412)
[»] chr6 (21 HSPs)
chr6 (169-284)||(20368158-20368274)
chr6 (170-254)||(31624097-31624181)
chr6 (200-279)||(34430470-34430550)
chr6 (178-236)||(11600861-11600919)
chr6 (181-247)||(34939758-34939824)
chr6 (197-254)||(27894053-27894110)
chr6 (209-257)||(5564146-5564194)
chr6 (168-228)||(32171360-32171420)
chr6 (171-222)||(283134-283185)
chr6 (200-278)||(6536597-6536676)
chr6 (168-251)||(34538195-34538278)
chr6 (174-233)||(34544127-34544186)
chr6 (170-228)||(696635-696693)
chr6 (168-234)||(725632-725698)
chr6 (201-285)||(13907822-13907907)
chr6 (209-285)||(26694853-26694930)
chr6 (172-286)||(2735043-2735159)
chr6 (211-286)||(6909892-6909968)
chr6 (209-257)||(13907589-13907637)
chr6 (168-248)||(32577963-32578043)
chr6 (169-229)||(34404703-34404763)
[»] chr8 (18 HSPs)
chr8 (169-233)||(13459673-13459737)
chr8 (175-247)||(42370345-42370417)
chr8 (169-286)||(38648325-38648444)
chr8 (189-254)||(20672757-20672822)
chr8 (200-284)||(27028807-27028892)
chr8 (168-236)||(29168642-29168711)
chr8 (209-257)||(4762513-4762561)
chr8 (169-233)||(8066748-8066812)
chr8 (175-286)||(11415128-11415240)
chr8 (166-254)||(11569432-11569520)
chr8 (197-248)||(39866740-39866791)
chr8 (210-252)||(11494155-11494197)
chr8 (168-254)||(29169075-29169160)
chr8 (183-257)||(34290873-34290947)
chr8 (170-251)||(3254235-3254316)
chr8 (169-257)||(26473730-26473818)
chr8 (200-240)||(31168035-31168075)
chr8 (169-233)||(42215284-42215348)


Alignment Details
Target: chr2 (Bit Score: 187; Significance: 1e-101; HSPs: 37)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 189 - 391
Target Start/End: Complemental strand, 1810736 - 1810534
Alignment:
Q  189 tatgacaggtccataaacttttttcagcttattttcataaactcttcaagatggcttataaaaacaactacaacttatacaaaaacaatttaactttaat 288  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| ||||||    
T  1810736 tatgacaggtcaataaacttttttcagcttattttcataaactcttcaagatagcttataaaaacaactataacttatacaaaaacaatttaaatttaat 1810637  T
Q  289 aaaaatagattatacagaagcgcttatacatacatgagcccaaagagcagcatcatcaaaatattggagatatgtattggattgagaaaagatgaggcga 388  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1810636 aaaaatagattatacagaagcgcttatacatacatgagcccaaagagcagcatcatcaaaatattggagatatgtattggattgagaaaagatgaggcga 1810537  T
Q  389 gca 391  Q
    |||    
T  1810536 gca 1810534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 13 - 149
Target Start/End: Complemental strand, 1810876 - 1810740
Alignment:
Q  13 attcttatcatcagcagccatatctcttaacacaactctctaccaacagccaaaacaaaaatagaagtcaagcttacactctctttttctagttcaacta 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  1810876 attcttatcatcagcagccatatctcttaacacaactctctaccaacagccaaaacaaaaatacaagtcaagcttacactctctttttctagttcaacta 1810777  T
Q  113 cttatttgtttatgttaaaaattaggatctgtttgga 149  Q
    |||||||||||||||||||||||||||||||| ||||    
T  1810776 cttatttgtttatgttaaaaattaggatctgtatgga 1810740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 172 - 285
Target Start/End: Complemental strand, 33941998 - 33941884
Alignment:
Q  172 aacttatgaaaacagcctatgacaggtccataaacttttttcagcttattttcataaactcttcaagatggcttataaaaacaa-ctacaacttatacaa 270  Q
    |||||||||||||| | ||||||| || ||||| ||  ||||| |||||| ||||||||||| |||||| |||||| |||||||  || |||||||||||    
T  33941998 aacttatgaaaacaacttatgacaagttcataagctgctttcaacttattatcataaactctccaagatagcttatgaaaacaagttataacttatacaa 33941899  T
Q  271 aaacaatttaacttt 285  Q
    ||||||||| |||||    
T  33941898 aaacaattttacttt 33941884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 181 - 279
Target Start/End: Original strand, 10563548 - 10563647
Alignment:
Q  181 aaacagcctatgacaggtccataaacttttttcagcttattttcataaactcttcaagatggcttataaaaacaac-tacaacttatacaaaaacaattt 279  Q
    ||||||||||||||| |||||||| || |||||||||||||||| ||| |||||||  || |||||| |||||||| || |||||| | |||||||||||    
T  10563548 aaacagcctatgacatgtccataagctattttcagcttattttcttaagctcttcagcatagcttatgaaaacaacttataacttacaaaaaaacaattt 10563647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 169 - 253
Target Start/End: Complemental strand, 33256832 - 33256748
Alignment:
Q  169 gagaacttatgaaaacagcctatgacaggtccataaacttttttcagcttattttcataaactcttcaagatggcttataaaaac 253  Q
    |||| |||||||||||||| ||||||| || |||||||| || ||||||||||||||||   |||||| |||||||||| |||||    
T  33256832 gagagcttatgaaaacagcttatgacatgttcataaactgttctcagcttattttcatacggtcttcaggatggcttatgaaaac 33256748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 175 - 280
Target Start/End: Complemental strand, 680589 - 680483
Alignment:
Q  175 ttatgaaaacagcctatgacaggtccataaacttttttcagcttattttcataaactcttcaagatggcttataaaaacaac-tacaacttatacaaaaa 273  Q
    ||||||||||||| ||||||| ||  ||||||| ||||||||||||||||| ||  |||||||||| |||||| |||| | | || | ||||||| ||||    
T  680589 ttatgaaaacagcttatgacatgtttataaactgttttcagcttattttcacaagttcttcaagatagcttatgaaaatagcttatagcttatacgaaaa 680490  T
Q  274 caattta 280  Q
    |||||||    
T  680489 caattta 680483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 169 - 230
Target Start/End: Complemental strand, 787424 - 787363
Alignment:
Q  169 gagaacttatgaaaacagcctatgacaggtccataaacttttttcagcttattttcataaac 230  Q
    ||||||||||||||||||| ||||||| |||||||| || |||||||||||| | |||||||    
T  787424 gagaacttatgaaaacagcttatgacatgtccataagctgttttcagcttatctccataaac 787363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 168 - 225
Target Start/End: Original strand, 1494423 - 1494480
Alignment:
Q  168 agagaacttatgaaaacagcctatgacaggtccataaacttttttcagcttattttca 225  Q
    ||||| |||||||||||||| ||||||| ||||||||||| |||| ||||||||||||    
T  1494423 agagagcttatgaaaacagcttatgacatgtccataaactgtttttagcttattttca 1494480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 168 - 286
Target Start/End: Complemental strand, 1625994 - 1625874
Alignment:
Q  168 agagaacttatgaaaacagcctatgacag-gtccataaacttttttcagcttattttcataaactcttcaagatggcttataaaaacaact-acaactta 265  Q
    |||||||||||||||  ||| |||||||  || |||||  | ||||||||| |||||| |||  ||| |||||| |||||| ||||||||| | ||||||    
T  1625994 agagaacttatgaaagtagcttatgacaatgttcataagatgttttcagctgattttcgtaagttctccaagatagcttatgaaaacaacttataactta 1625895  T
Q  266 tacaaaaacaatttaacttta 286  Q
    ||| |||||||||||||||||    
T  1625894 tacgaaaacaatttaacttta 1625874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 209 - 257
Target Start/End: Original strand, 43985021 - 43985069
Alignment:
Q  209 ttttcagcttattttcataaactcttcaagatggcttataaaaacaact 257  Q
    |||||||||||||||||||| ||||||||||| |||||| |||||||||    
T  43985021 ttttcagcttattttcataagctcttcaagatagcttatgaaaacaact 43985069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 206 - 282
Target Start/End: Complemental strand, 45229566 - 45229490
Alignment:
Q  206 cttttttcagcttattttcataaactcttcaagatggcttataaaaacaactacaacttatacaaaaacaatttaac 282  Q
    |||||||||||||||||||||||  |||  ||||| |||||| |||||||  | ||| |||||||||||||||||||    
T  45229566 cttttttcagcttattttcataagttctcgaagatagcttatgaaaacaatgataacatatacaaaaacaatttaac 45229490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 200 - 286
Target Start/End: Complemental strand, 41851596 - 41851509
Alignment:
Q  200 cataaacttttttcagcttattttcataaactcttcaagatggcttataaaaacaact-acaacttatacaaaaacaatttaacttta 286  Q
    ||||| ||||| |||||||| ||||||||| ||| |||||| |||| | ||||||||| | | | |||||||||||||||||||||||    
T  41851596 cataagcttttctcagcttaatttcataaattctccaagatagcttctgaaaacaacttatagcatatacaaaaacaatttaacttta 41851509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 169 - 285
Target Start/End: Complemental strand, 26626966 - 26626848
Alignment:
Q  169 gagaacttatgaaaacagcctatgacag-gtccataaacttttttcagcttattttcataaactcttcaagatggcttataaaaacaactac-aacttat 266  Q
    ||||||||| ||||| ||| |||||||  || ||||| || ||||||| ||||||||||||  ||| |||||| |||||| |||||| || | | |||||    
T  26626966 gagaacttacgaaaatagcttatgacattgttcataatctgttttcaggttattttcataagttctgcaagatagcttatgaaaacagcttctagcttat 26626867  T
Q  267 acaaaaacaatttaacttt 285  Q
    || ||||||||||||||||    
T  26626866 acgaaaacaatttaacttt 26626848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 209 - 254
Target Start/End: Original strand, 3067397 - 3067442
Alignment:
Q  209 ttttcagcttattttcataaactcttcaagatggcttataaaaaca 254  Q
    |||| ||||||||||||||||||||||||||| |||||| ||||||    
T  3067397 tttttagcttattttcataaactcttcaagatagcttatgaaaaca 3067442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 170 - 223
Target Start/End: Original strand, 5902528 - 5902581
Alignment:
Q  170 agaacttatgaaaacagcctatgacaggtccataaacttttttcagcttatttt 223  Q
    |||||||||||||||||| ||||||| || |||||||| |||||||||| ||||    
T  5902528 agaacttatgaaaacagcttatgacatgttcataaactgttttcagcttgtttt 5902581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 175 - 228
Target Start/End: Complemental strand, 9595344 - 9595291
Alignment:
Q  175 ttatgaaaacagcctatgacaggtccataaacttttttcagcttattttcataa 228  Q
    ||||||||||| | ||||||| |||||| |||| ||||||||||||||||||||    
T  9595344 ttatgaaaacatcttatgacatgtccatgaactattttcagcttattttcataa 9595291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 169 - 254
Target Start/End: Original strand, 35378994 - 35379079
Alignment:
Q  169 gagaacttatgaaaacagcctatgacaggtccataaacttttttcagcttattttcataaactcttcaagatggcttataaaaaca 254  Q
    |||| ||||||||||||||  |||||  || |||||  | |||||||||||||||||||| |||| |||||| |||||| ||||||    
T  35378994 gagagcttatgaaaacagctgatgacttgttcataagttgttttcagcttattttcataagctctccaagatagcttatgaaaaca 35379079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 200 - 284
Target Start/End: Complemental strand, 40279258 - 40279173
Alignment:
Q  200 cataaacttttttcagcttattttcataaactcttcaagatggcttataaaaacaact-acaacttatacaaaaacaatttaactt 284  Q
    |||||||| ||||||||| ||||||||||  ||| ||| || |||||| ||||||||| | | ||||||| |||||||||||||||    
T  40279258 cataaactattttcagctaattttcataagttctccaacatagcttatgaaaacaacttatatcttataccaaaacaatttaactt 40279173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 172 - 252
Target Start/End: Original strand, 26857091 - 26857171
Alignment:
Q  172 aacttatgaaaacagcctatgacaggtccataaacttttttcagcttattttcataaactcttcaagatggcttataaaaa 252  Q
    |||||||||||||| | |||||||||| || |  || |||||||||||||| || ||||||| |||||| ||||| |||||    
T  26857091 aacttatgaaaacaacttatgacaggttcagagtctattttcagcttatttccacaaactctccaagatagcttacaaaaa 26857171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 169 - 257
Target Start/End: Original strand, 43065428 - 43065516
Alignment:
Q  169 gagaacttatgaaaacagcctatgacaggtccataaacttttttcagcttattttcataaactcttcaagatggcttataaaaacaact 257  Q
    |||| |||||||||||| | ||||||| ||||||||| | ||||||||||||||  |||| |||| || |||  ||||| |||||||||    
T  43065428 gagagcttatgaaaacaacttatgacatgtccataaattgttttcagcttatttcaataagctctccacgataacttatgaaaacaact 43065516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 209 - 279
Target Start/End: Original strand, 656795 - 656866
Alignment:
Q  209 ttttcagcttattttcataaactcttcaagatggcttataaaaacaac-tacaacttatacaaaaacaattt 279  Q
    |||||| ||||||||||||| |||| |||||| |||||| ||| |||| |||| ||||||| ||||||||||    
T  656795 ttttcatcttattttcataagctctgcaagatagcttatgaaatcaacttacagcttatacgaaaacaattt 656866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 170 - 233
Target Start/End: Complemental strand, 1647327 - 1647264
Alignment:
Q  170 agaacttatgaaaacagcctatgacaggtccataaacttttttcagcttattttcataaactct 233  Q
    |||||||||||||||||| ||||||| |  ||||| || |||||||||||||| ||||| ||||    
T  1647327 agaacttatgaaaacagcttatgacatgctcataagctgttttcagcttatttccataagctct 1647264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 200 - 286
Target Start/End: Complemental strand, 3611287 - 3611200
Alignment:
Q  200 cataaacttttttcagcttattttcataaactcttcaagatggcttataaaaacaa-ctacaacttatacaaaaacaatttaacttta 286  Q
    |||||||| |||| |||||||||||||||  ||| |||||| |||| | ||||||  ||| ||  |||||||||||||||||||||||    
T  3611287 cataaactgtttttagcttattttcataagttctccaagatagcttgtgaaaacagtctataaactatacaaaaacaatttaacttta 3611200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 169 - 247
Target Start/End: Complemental strand, 43570506 - 43570428
Alignment:
Q  169 gagaacttatgaaaacagcctatgaca-ggtccataaacttttttcagcttattttcataaactcttcaagatggcttat 247  Q
    ||||||||||||||||||| |||||||  || ||||| ||||||| ||||||||||||||| || | || ||||||||||    
T  43570506 gagaacttatgaaaacagcttatgacattgttcataagctttttt-agcttattttcataagctttccaggatggcttat 43570428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 168 - 257
Target Start/End: Original strand, 43279505 - 43279595
Alignment:
Q  168 agagaacttatgaaaacagcctatgacaggtc-cataaacttttttcagcttattttcataaactcttcaagatggcttataaaaacaact 257  Q
    |||||| ||||||||||||| |||||||  |  ||||| ||||||||| |||||||||| ||  ||| ||| || ||||||||||||||||    
T  43279505 agagaatttatgaaaacagcttatgacaattttcataagcttttttcaacttattttcacaagttctccaatatagcttataaaaacaact 43279595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 170 - 228
Target Start/End: Original strand, 44606089 - 44606147
Alignment:
Q  170 agaacttatgaaaacagcctatgacaggtccataaacttttttcagcttattttcataa 228  Q
    |||||||||||||||| | ||||||| ||||||||  | ||||||||| ||||||||||    
T  44606089 agaacttatgaaaacaacttatgacatgtccataagttgttttcagctgattttcataa 44606147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 225
Target Start/End: Complemental strand, 4350783 - 4350726
Alignment:
Q  168 agagaacttatgaaaacagcctatgacaggtccataaacttttttcagcttattttca 225  Q
    |||||||||||||||||||| ||||||| || ||||||||  ||| || |||||||||    
T  4350783 agagaacttatgaaaacagcttatgacatgttcataaactgattttaggttattttca 4350726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 254
Target Start/End: Complemental strand, 8017526 - 8017441
Alignment:
Q  169 gagaacttatgaaaacagcctatgacaggtccataaacttttttcagcttattttcataaactcttcaagatggcttataaaaaca 254  Q
    ||||||||||||||||||| ||||| | || |||||  | ||||| || |||||||||||  ||| |||||| |||||| ||||||    
T  8017526 gagaacttatgaaaacagcttatgatatgttcataatttgttttctgcgtattttcataagttctccaagatagcttatgaaaaca 8017441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 247
Target Start/End: Complemental strand, 33192293 - 33192216
Alignment:
Q  170 agaacttatgaaaacagcctatgacaggtccataaacttttttcagcttattttcataaactcttcaagatggcttat 247  Q
    |||||||||||||||||  |||||||  ||||||| || |||||||||||| || |||| |||| || ||| ||||||    
T  33192293 agaacttatgaaaacagtttatgacatatccataagctgttttcagcttatatttataagctctccaggatagcttat 33192216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 246
Target Start/End: Original strand, 35378510 - 35378587
Alignment:
Q  169 gagaacttatgaaaacagcctatgacaggtccataaacttttttcagcttattttcataaactcttcaagatggctta 246  Q
    |||||||||||||||||||  |||||  || |||||  | |||||||||||||||||||| || | |||||| |||||    
T  35378510 gagaacttatgaaaacagctgatgacttgttcataagttattttcagcttattttcataagctatccaagattgctta 35378587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 200 - 252
Target Start/End: Original strand, 1056362 - 1056414
Alignment:
Q  200 cataaacttttttcagcttattttcataaactcttcaagatggcttataaaaa 252  Q
    ||||| || ||||||||||||||  |||||||||||||||| |||||| ||||    
T  1056362 cataatctattttcagcttatttctataaactcttcaagatagcttatgaaaa 1056414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 192 - 240
Target Start/End: Original strand, 3235385 - 3235433
Alignment:
Q  192 gacaggtccataaacttttttcagcttattttcataaactcttcaagat 240  Q
    ||||||| ||||| || |||||||||||||| |||||||| ||||||||    
T  3235385 gacaggttcataagctgttttcagcttatttccataaacttttcaagat 3235433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 209 - 257
Target Start/End: Complemental strand, 6988167 - 6988119
Alignment:
Q  209 ttttcagcttattttcataaactcttcaagatggcttataaaaacaact 257  Q
    |||||| |||||||  |||||||||||||||| |||||| |||||||||    
T  6988167 ttttcatcttatttctataaactcttcaagatagcttatgaaaacaact 6988119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 169 - 228
Target Start/End: Complemental strand, 13325663 - 13325603
Alignment:
Q  169 gagaacttatgaaaacagcctatgacaggtc-cataaacttttttcagcttattttcataa 228  Q
    |||||||| |||||||||| |||||||  || ||||| |||||||||||| ||||||||||    
T  13325663 gagaacttttgaaaacagcttatgacatttcacataagcttttttcagctcattttcataa 13325603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 172 - 286
Target Start/End: Complemental strand, 18066218 - 18066102
Alignment:
Q  172 aacttatgaaaacagcctatgaca-ggtccataaacttttttcagcttattttcataaactcttcaagatggcttataaaaacaac-tacaacttataca 269  Q
    |||||||||||||||| |||||||  |  ||||| || |||||| ||||||||| |||  ||| |||||| |||||| |||||| | || | ||||||      
T  18066218 aacttatgaaaacagcttatgacattgctcataagctattttcaccttattttcttaagttctccaagatagcttatgaaaacagcttatagcttatatg 18066119  T
Q  270 aaaacaatttaacttta 286  Q
    |||||||||||||||||    
T  18066118 aaaacaatttaacttta 18066102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 197 - 257
Target Start/End: Complemental strand, 40279471 - 40279411
Alignment:
Q  197 gtccataaacttttttcagcttattttcataaactcttcaagatggcttataaaaacaact 257  Q
    ||||||||||| |||||| |||||||||||||  ||| ||| || |||||| |||||||||    
T  40279471 gtccataaactgttttcaacttattttcataagttctccaatatagcttatgaaaacaact 40279411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 169 - 233
Target Start/End: Original strand, 43529836 - 43529900
Alignment:
Q  169 gagaacttatgaaaacagcctatgacaggtccataaacttttttcagcttattttcataaactct 233  Q
    ||||| ||||||||||||| |||| || || ||||| || ||||||| |||||||||||| ||||    
T  43529836 gagaatttatgaaaacagcttatgccatgttcataagctattttcagtttattttcataagctct 43529900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 3e-21; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 168 - 279
Target Start/End: Complemental strand, 2996666 - 2996554
Alignment:
Q  168 agagaacttatgaaaacagcctatgacaggtccataaacttttttcagcttattttcataaactcttcaagatggcttataaaaacaac-tacaacttat 266  Q
    ||||| |||||||||||| | ||||||| |||||||| ||||||||| ||||||||||||  |||| |||||| |||||| |||||||| || |||||||    
T  2996666 agagagcttatgaaaacaacttatgacatgtccataagcttttttcaacttattttcatacgctctccaagatagcttatgaaaacaacttataacttat 2996567  T
Q  267 acaaaaacaattt 279  Q
    | |||||||||||    
T  2996566 ataaaaacaattt 2996554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 189 - 257
Target Start/End: Original strand, 6978960 - 6979028
Alignment:
Q  189 tatgacaggtccataaacttttttcagcttattttcataaactcttcaagatggcttataaaaacaact 257  Q
    ||||||| ||| |||| || |||||||||||||||||||||||||| | ||||||||||||||||||||    
T  6978960 tatgacatgtctataagctgttttcagcttattttcataaactctttaggatggcttataaaaacaact 6979028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 168 - 286
Target Start/End: Original strand, 28300276 - 28300395
Alignment:
Q  168 agagaacttatgaaaacagcctatgacaggtccataaacttttttcagcttattttcataaactcttcaagatggcttataaaaaca-actacaacttat 266  Q
    |||||| ||||||||||||||||||||| || | |||  | |||||| ||||||||||||| ||||||||||| || ||| |||| |   || | |||||    
T  28300276 agagaatttatgaaaacagcctatgacatgttcttaagttgttttcaacttattttcataagctcttcaagatagcctatgaaaatagtttatagcttat 28300375  T
Q  267 acaaaaacaatttaacttta 286  Q
    ||||||||||||||||||||    
T  28300376 acaaaaacaatttaacttta 28300395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 209 - 286
Target Start/End: Complemental strand, 17884120 - 17884042
Alignment:
Q  209 ttttcagcttattttcataaactcttcaagatggcttataaaaacaact-acaacttatacaaaaacaatttaacttta 286  Q
    ||||||||| |||||||||| |||| ||| || |||||| ||||||||| | |||||||||||||||||||||||||||    
T  17884120 ttttcagctaattttcataagctctccaatatagcttatgaaaacaactgataacttatacaaaaacaatttaacttta 17884042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 170 - 286
Target Start/End: Complemental strand, 41336852 - 41336734
Alignment:
Q  170 agaacttatgaaaacagcctatgacaggtc-cataaacttttttcagcttattttcataaactcttcaagatggcttataaaaacaact-acaacttata 267  Q
    |||||||| ||||||||| |||||||| |  ||||| ||||||||| ||||||||| |||| ||||||   | ||||| |||||||| | | ||| ||||    
T  41336852 agaacttaagaaaacagcttatgacagttttcataagcttttttcaacttattttcgtaaattcttcaccctagcttagaaaaacaatttataacatata 41336753  T
Q  268 caaaaacaatttaacttta 286  Q
    |||||||||||||||||||    
T  41336752 caaaaacaatttaacttta 41336734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 169 - 257
Target Start/End: Original strand, 21731633 - 21731722
Alignment:
Q  169 gagaacttatgaaaacagcctatgacaggtc-cataaacttttttcagcttattttcataaactcttcaagatggcttataaaaacaact 257  Q
    ||||||||||||||||||| ||| |||  |  ||||||||||||||| |||| ||||||||| ||| ||| || ||||||||||||||||    
T  21731633 gagaacttatgaaaacagcttatcacaattttcataaacttttttcaacttactttcataaattctccaatatagcttataaaaacaact 21731722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 209 - 286
Target Start/End: Complemental strand, 47800675 - 47800604
Alignment:
Q  209 ttttcagcttattttcataaactcttcaagatggcttataaaaacaactacaacttatacaaaaacaatttaacttta 286  Q
    |||||||||||||||||||| ||||||||||| |||||| |||      ||| |||||||||||||| ||||||||||    
T  47800675 ttttcagcttattttcataagctcttcaagatagcttatgaaa------acagcttatacaaaaacattttaacttta 47800604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 209 - 286
Target Start/End: Complemental strand, 51630163 - 51630085
Alignment:
Q  209 ttttcagcttattttcataaactcttcaagatggcttataaaaacaac-tacaacttatacaaaaacaatttaacttta 286  Q
    ||||||||||||||||||||| |||||||||| |||||| |||| | | || | ||||||  |||||||||||||||||    
T  51630163 ttttcagcttattttcataaattcttcaagatagcttatgaaaatagcttatagcttatatcaaaacaatttaacttta 51630085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 169 - 257
Target Start/End: Original strand, 17822842 - 17822931
Alignment:
Q  169 gagaacttatgaaaacagcctatgacaggtc-cataaacttttttcagcttattttcataaactcttcaagatggcttataaaaacaact 257  Q
    |||||| |||||||||||| |||||||  |  ||||| ||||||| |||||||||||||||  ||| |||||| |||||| |||||||||    
T  17822842 gagaacatatgaaaacagcttatgacatttttcataagctttttttagcttattttcataagttctccaagatagcttatgaaaacaact 17822931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 209 - 254
Target Start/End: Complemental strand, 18011923 - 18011878
Alignment:
Q  209 ttttcagcttattttcataaactcttcaagatggcttataaaaaca 254  Q
    |||| ||||||||||||||||||||||||||| |||||| ||||||    
T  18011923 tttttagcttattttcataaactcttcaagatagcttatgaaaaca 18011878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 208 - 257
Target Start/End: Original strand, 30668383 - 30668432
Alignment:
Q  208 tttttcagcttattttcataaactcttcaagatggcttataaaaacaact 257  Q
    |||||||||||| ||||||||||| | |||||| ||||||||||||||||    
T  30668383 tttttcagcttaatttcataaactatccaagatagcttataaaaacaact 30668432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 189 - 257
Target Start/End: Complemental strand, 11264373 - 11264305
Alignment:
Q  189 tatgacaggtccataaacttttttcagcttattttcataaactcttcaagatggcttataaaaacaact 257  Q
    ||||||| ||||||||||| |||||| ||||||| ||||| ||||  | |||||||||| |||||||||    
T  11264373 tatgacatgtccataaactgttttcaacttatttccataagctctctaggatggcttatgaaaacaact 11264305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 179 - 254
Target Start/End: Complemental strand, 23819171 - 23819096
Alignment:
Q  179 gaaaacagcctatgacaggtccataaacttttttcagcttattttcataaactcttcaagatggcttataaaaaca 254  Q
    ||||||||| ||||||| ||||||||  | |||||| |||||||  |||| ||||||||||| |||||| ||||||    
T  23819171 gaaaacagcttatgacatgtccataagttgttttcatcttatttctataagctcttcaagatagcttatgaaaaca 23819096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 214 - 288
Target Start/End: Complemental strand, 29778842 - 29778767
Alignment:
Q  214 agcttattttcataaactcttcaagatggcttataaaaacaac-tacaacttatacaaaaacaatttaactttaat 288  Q
    ||||||||||||||| ||||||||| | |||||| |||||||| |||| ||||||  |||||||||| || |||||    
T  29778842 agcttattttcataagctcttcaaggtagcttatgaaaacaacttacagcttatatgaaaacaatttcaccttaat 29778767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 178 - 240
Target Start/End: Complemental strand, 44249368 - 44249306
Alignment:
Q  178 tgaaaacagcctatgacaggtccataaacttttttcagcttattttcataaactcttcaagat 240  Q
    |||||||||| ||||||| ||  ||||  ||| ||||||||||||||||||||||| ||||||    
T  44249368 tgaaaacagcttatgacatgttgataagttttcttcagcttattttcataaactctccaagat 44249306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 217 - 286
Target Start/End: Complemental strand, 56480392 - 56480322
Alignment:
Q  217 ttattttcataaactcttcaagatggcttataaaaacaact-acaacttatacaaaaacaatttaacttta 286  Q
    |||||||||||| |||| |||||| | |||| |||||| || | |||||||||| ||||||||||||||||    
T  56480392 ttattttcataagctctccaagatagtttatgaaaacagcttataacttatacataaacaatttaacttta 56480322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 284
Target Start/End: Complemental strand, 679809 - 679692
Alignment:
Q  170 agaacttatgaaaacagcctatgacaggtccataaacttttttcagcttattttcataaactctt-caagatggcttataaaaacaac-tacaacttata 267  Q
    |||| ||||||||||| | ||||| | || |||||||| |||||||| ||||||||||| ||||| ||||||  ||||| |  ||||| || | ||||||    
T  679809 agaagttatgaaaacatcttatgatatgttcataaactgttttcagcatattttcataagctcttacaagatatcttatgactacaacttatatcttata 679710  T
Q  268 c-aaaaacaatttaactt 284  Q
    | ||||||||||||||||    
T  679709 caaaaaacaatttaactt 679692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 200 - 240
Target Start/End: Original strand, 51210463 - 51210504
Alignment:
Q  200 cataaact-tttttcagcttattttcataaactcttcaagat 240  Q
    |||||||| |||||||||||||||||||||||||| ||||||    
T  51210463 cataaactatttttcagcttattttcataaactctccaagat 51210504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 206 - 289
Target Start/End: Original strand, 437259 - 437343
Alignment:
Q  206 cttttttcagcttattttcataaactcttcaagatggcttataaaaacaact-acaacttatacaaaaacaatttaactttaata 289  Q
    ||||| |||||||||||||||||| ||| ||| || | ||||||||||| || | |||  || |||||| |||||||||||||||    
T  437259 cttttctcagcttattttcataaattctccaatatagtttataaaaacagctcataacacatgcaaaaataatttaactttaata 437343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 200 - 240
Target Start/End: Complemental strand, 1312902 - 1312862
Alignment:
Q  200 cataaacttttttcagcttattttcataaactcttcaagat 240  Q
    |||||||| |||||||||||||| |||||||||| ||||||    
T  1312902 cataaactgttttcagcttatttccataaactctccaagat 1312862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 173 - 225
Target Start/End: Original strand, 7205800 - 7205852
Alignment:
Q  173 acttatgaaaacagcctatgacaggtccataaacttttttcagcttattttca 225  Q
    ||||| || |||||| ||||||| ||||| ||||| |||||||||||||||||    
T  7205800 acttaagataacagcttatgacatgtccacaaactattttcagcttattttca 7205852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 189 - 257
Target Start/End: Complemental strand, 19250618 - 19250550
Alignment:
Q  189 tatgacaggtccataaacttttttcagcttattttcataaactcttcaagatggcttataaaaacaact 257  Q
    ||||||| |||||||| ||  ||||| |||||||| |||  |||||||||||  |||||||||||||||    
T  19250618 tatgacatgtccataagctgatttcaacttatttttatatgctcttcaagataacttataaaaacaact 19250550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 189 - 233
Target Start/End: Original strand, 29467622 - 29467666
Alignment:
Q  189 tatgacaggtccataaacttttttcagcttattttcataaactct 233  Q
    ||||||| |||||||| || |||||||||||||| ||||||||||    
T  29467622 tatgacatgtccataagctgttttcagcttatttccataaactct 29467666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 209 - 253
Target Start/End: Original strand, 32421277 - 32421321
Alignment:
Q  209 ttttcagcttattttcataaactcttcaagatggcttataaaaac 253  Q
    |||||||||||||||||||| ||||  ||||| ||||||||||||    
T  32421277 ttttcagcttattttcataacctctctaagatagcttataaaaac 32421321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 201 - 257
Target Start/End: Complemental strand, 50400547 - 50400491
Alignment:
Q  201 ataaacttttttcagcttattttcataaactcttcaagatggcttataaaaacaact 257  Q
    ||||||| ||||||||||||||||||||| | |||| ||| | |||| |||||||||    
T  50400547 ataaactgttttcagcttattttcataaagttttcatgatagtttatgaaaacaact 50400491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 30)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 209 - 284
Target Start/End: Original strand, 10272449 - 10272525
Alignment:
Q  209 ttttcagcttattttcataaactcttcaagatggcttataaaaacaac-tacaacttatacaaaaacaatttaactt 284  Q
    ||||||||||||||||||||||||| ||||||||||||| |||||||| || | ||||||| |||||||||| ||||    
T  10272449 ttttcagcttattttcataaactctccaagatggcttatgaaaacaacttatagcttatacgaaaacaatttgactt 10272525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 168 - 254
Target Start/End: Original strand, 13604826 - 13604912
Alignment:
Q  168 agagaacttatgaaaacagcctatgacaggtccataaacttttttcagcttattttcataaactcttcaagatggcttataaaaaca 254  Q
    ||||| |||||||||||||| ||||||| |||||||   | |||||| ||||||||||||| |||||||||||  ||||| ||||||    
T  13604826 agagagcttatgaaaacagcttatgacatgtccatacgttgttttcaacttattttcataagctcttcaagataacttatgaaaaca 13604912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 170 - 282
Target Start/End: Original strand, 16937861 - 16937975
Alignment:
Q  170 agaacttatgaaaacagcctatgacaggtc-cataaacttttttcagcttattttcataaactcttcaagatggcttataaaaacaac-tacaacttata 267  Q
    |||||||||||||||||| |||||||  |  ||||| ||||||||||||||||||| |||  ||| ||| || || |||||||||||| || | | ||||    
T  16937861 agaacttatgaaaacagcttatgacaaatttcataagcttttttcagcttattttcctaagttctccaatatagcgtataaaaacaacttatagcatata 16937960  T
Q  268 caaaaacaatttaac 282  Q
    |||||||||||||||    
T  16937961 caaaaacaatttaac 16937975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 170 - 285
Target Start/End: Complemental strand, 2568749 - 2568632
Alignment:
Q  170 agaacttatgaaaacagcctatgacaggtccataaacttttttcagcttattttcataaactcttcaagatggcttataaaaacaac-tacaacttatac 268  Q
    |||||||||||||||||| |||||||  | |||||  | |||| ||||||||||||| | |||| || ||| |||||| |||||||| || | |||||||    
T  2568749 agaacttatgaaaacagcttatgacatattcataagttatttttagcttattttcattagctctccatgatagcttatgaaaacaacttatagcttatac 2568650  T
Q  269 -aaaaacaatttaacttt 285  Q
     |||||||||||||||||    
T  2568649 gaaaaacaatttaacttt 2568632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 169 - 254
Target Start/End: Original strand, 17258861 - 17258946
Alignment:
Q  169 gagaacttatgaaaacagcctatgacaggtccataaacttttttcagcttattttcataaactcttcaagatggcttataaaaaca 254  Q
    |||||| |||||||| ||| ||||||| || ||||| || |||||||||||||||||||| ||||||| ||| | |||| ||||||    
T  17258861 gagaacctatgaaaatagcttatgacatgttcataagctgttttcagcttattttcataagctcttcaggatagtttatgaaaaca 17258946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 168 - 257
Target Start/End: Complemental strand, 17368769 - 17368680
Alignment:
Q  168 agagaacttatgaaaacagcctatgacaggtccataaacttttttcagcttattttcataaactcttcaagatggcttataaaaacaact 257  Q
    |||||||||||||||||| | ||||||| || ||||  |  |||||||||||||| ||||| |||| |||||| |||||| |||||||||    
T  17368769 agagaacttatgaaaacaacttatgacatgttcatatgcagttttcagcttatttccataacctctccaagatagcttatgaaaacaact 17368680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 169 - 284
Target Start/End: Complemental strand, 39105557 - 39105440
Alignment:
Q  169 gagaacttatgaaaacagcctatgacag-gtccataaacttttttcagcttattttcataaactcttcaagatggcttataaaaaca-actacaacttat 266  Q
    ||||| ||||||||||||| |||||||  || ||||| || |||| |||||||||||||||  ||| |||||| |||||| |||||| | || | |||||    
T  39105557 gagaatttatgaaaacagcttatgacattgttcataagctatttttagcttattttcataagttctccaagatagcttatgaaaacagattatagcttat 39105458  T
Q  267 acaaaaacaatttaactt 284  Q
    || |||||||||||||||    
T  39105457 acgaaaacaatttaactt 39105440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 189 - 257
Target Start/End: Original strand, 5284446 - 5284514
Alignment:
Q  189 tatgacaggtccataaacttttttcagcttattttcataaactcttcaagatggcttataaaaacaact 257  Q
    ||||||| |||||||| ||||||||||||||||||||| | ||||||| ||| || ||| |||||||||    
T  5284446 tatgacatgtccataagcttttttcagcttattttcattagctcttcatgatagcctatgaaaacaact 5284514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 174 - 254
Target Start/End: Original strand, 21768180 - 21768260
Alignment:
Q  174 cttatgaaaacagcctatgacaggtccataaacttttttcagcttattttcataaactcttcaagatggcttataaaaaca 254  Q
    |||||||||||||| ||||||| |||||||  || |||||| ||||||||| ||| |||||||||||  ||||| ||||||    
T  21768180 cttatgaaaacagcttatgacatgtccatacgctgttttcaacttattttcgtaagctcttcaagataacttatgaaaaca 21768260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 168 - 233
Target Start/End: Complemental strand, 4659275 - 4659210
Alignment:
Q  168 agagaacttatgaaaacagcctatgacaggtccataaacttttttcagcttattttcataaactct 233  Q
    ||||||| |||||||||||| ||||| |  |||||||||| ||||| |||||||| ||||||||||    
T  4659275 agagaacgtatgaaaacagcttatgaaaattccataaactgttttcggcttatttccataaactct 4659210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 209 - 273
Target Start/End: Complemental strand, 36318826 - 36318761
Alignment:
Q  209 ttttcagcttattttcataaactcttcaagatggcttataaaaacaac-tacaacttatacaaaaa 273  Q
    |||||||||||||| |||||| ||| |||||| |||||| |||||||| || ||||||||||||||    
T  36318826 ttttcagcttatttacataaattctccaagatagcttatgaaaacaacttaaaacttatacaaaaa 36318761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 189 - 257
Target Start/End: Complemental strand, 2468503 - 2468435
Alignment:
Q  189 tatgacaggtccataaacttttttcagcttattttcataaactcttcaagatggcttataaaaacaact 257  Q
    ||||||| |||||||| || |||| |||||| || ||||||||||||| ||| ||||||||||| ||||    
T  2468503 tatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaaagaact 2468435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 178 - 257
Target Start/End: Original strand, 32703263 - 32703342
Alignment:
Q  178 tgaaaacagcctatgacaggtccataaacttttttcagcttattttcataaactcttcaagatggcttataaaaacaact 257  Q
    |||| ||||| ||||||| ||  ||||||| ||||||||||||||| ||||| ||| | |||| |||||| |||||||||    
T  32703263 tgaagacagcttatgacacgtttataaactgttttcagcttatttttataaattctcctagatagcttatgaaaacaact 32703342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 168 - 255
Target Start/End: Original strand, 37611192 - 37611279
Alignment:
Q  168 agagaacttatgaaaacagcctatgacaggtccataaacttttttcagcttattttcataaactcttcaagatggcttataaaaacaa 255  Q
    ||||| |||||||||||| | | ||||| || ||||| || ||||||| |||||| ||||| |||| |||||| |||||| |||||||    
T  37611192 agagagcttatgaaaacaacttgtgacatgttcataagctgttttcaggttatttccataagctctccaagatagcttatgaaaacaa 37611279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 168 - 255
Target Start/End: Original strand, 37787922 - 37788009
Alignment:
Q  168 agagaacttatgaaaacagcctatgacaggtccataaacttttttcagcttattttcataaactcttcaagatggcttataaaaacaa 255  Q
    ||||| |||||||||||| | | ||||| || ||||| || ||||||| |||||| ||||| |||| |||||| |||||| |||||||    
T  37787922 agagagcttatgaaaacaacttgtgacatgttcataagctgttttcaggttatttccataagctctccaagatagcttatgaaaacaa 37788009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 173 - 286
Target Start/End: Complemental strand, 1619177 - 1619064
Alignment:
Q  173 acttatgaaaacagcctatgacaggtccataaacttttttcagcttattttcataaactcttcaagatggcttataaaaacaac-tacaacttatacaaa 271  Q
    ||||||||||||||| |||| ||  | |||||||| ||||||||| |||||||||  |||| ||| ||||||||| |||||| | || | |||||||  |    
T  1619177 acttatgaaaacagcttatgccatttacataaactgttttcagctgattttcatatgctctccaa-atggcttatgaaaacagcttatagcttatacgga 1619079  T
Q  272 aacaatttaacttta 286  Q
    || ||||||||||||    
T  1619078 aagaatttaacttta 1619064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 175 - 233
Target Start/End: Original strand, 11700362 - 11700420
Alignment:
Q  175 ttatgaaaacagcctatgacaggtccataaacttttttcagcttattttcataaactct 233  Q
    ||||| ||||| | ||||||| |||||||| || ||||||| |||||||||||||||||    
T  11700362 ttatggaaacaacttatgacatgtccataagctgttttcagattattttcataaactct 11700420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 169 - 281
Target Start/End: Original strand, 16457956 - 16458070
Alignment:
Q  169 gagaacttatgaaaacagcctatgacag-gtccataaacttttttcagcttattttcataaactcttcaagatggcttataaaaacaac-tacaacttat 266  Q
    ||||||||||||||||||| ||||||||  | ||||| || ||||||| ||||||||| ||  ||| |||  | ||| ||||||||||| || | | |||    
T  16457956 gagaacttatgaaaacagcttatgacagttttcataagctcttttcagtttattttcacaagttctccaatttagctcataaaaacaacttatagcatat 16458055  T
Q  267 acaaaaacaatttaa 281  Q
    |||||||||||||||    
T  16458056 acaaaaacaatttaa 16458070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 168 - 254
Target Start/End: Complemental strand, 36639615 - 36639529
Alignment:
Q  168 agagaacttatgaaaacagcctatgacaggtccataaacttttttcagcttattttcataaactcttcaagatggcttataaaaaca 254  Q
    |||||||||| |||||  || ||||||  ||||||||  | |||||  ||||||||||||| ||||||||||| |||||| ||||||    
T  36639615 agagaacttacgaaaattgcttatgacgtgtccataagttgttttcctcttattttcataagctcttcaagatagcttatgaaaaca 36639529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 278
Target Start/End: Original strand, 6587086 - 6587195
Alignment:
Q  170 agaacttatgaaaacagcctatgacaggtccataaacttttttcagcttattttcataaactcttcaagatggcttataaaaacaac-tacaacttatac 268  Q
    ||||||||  |||||||| |||||||||| ||||| || ||| ||||||||||||| ||  ||| ||  || |||||| |||||||| || | |||||||    
T  6587086 agaacttaaaaaaacagcttatgacaggttcataagctgtttacagcttattttcacaagttctccactatagcttatgaaaacaacttatagcttatac 6587185  T
Q  269 aaaaacaatt 278  Q
     |||||||||    
T  6587186 gaaaacaatt 6587195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 273
Target Start/End: Complemental strand, 7907933 - 7907868
Alignment:
Q  209 ttttcagcttattttcataaactcttcaagatggcttataaaaacaac-tacaacttatacaaaaa 273  Q
    ||||||||||| |||||||| |||| |||||  |||||| |||||||| || ||||||||||||||    
T  7907933 ttttcagcttaatttcataagctctccaagacagcttatcaaaacaacttataacttatacaaaaa 7907868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 233
Target Start/End: Complemental strand, 14331448 - 14331395
Alignment:
Q  180 aaaacagcctatgacaggtccataaacttttttcagcttattttcataaactct 233  Q
    |||||||| ||||||| |||||||| ||  ||||||||||||||||||| ||||    
T  14331448 aaaacagcttatgacatgtccataagctgatttcagcttattttcataagctct 14331395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 169 - 233
Target Start/End: Original strand, 499709 - 499773
Alignment:
Q  169 gagaacttatgaaaacagcctatgacaggtccataaacttttttcagcttattttcataaactct 233  Q
    ||||||||||||||||||| ||||||| ||  | ||  | |||||||||||||| ||||||||||    
T  499709 gagaacttatgaaaacagcttatgacatgttaacaagttgttttcagcttatttccataaactct 499773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 209 - 257
Target Start/End: Original strand, 2880565 - 2880613
Alignment:
Q  209 ttttcagcttattttcataaactcttcaagatggcttataaaaacaact 257  Q
    |||||||||||||| ||||||||||||   || ||||||||||||||||    
T  2880565 ttttcagcttatttccataaactcttctgaatagcttataaaaacaact 2880613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 170 - 254
Target Start/End: Complemental strand, 7674739 - 7674655
Alignment:
Q  170 agaacttatgaaaacagcctatgacaggtccataaacttttttcagcttattttcataaactcttcaagatggcttataaaaaca 254  Q
    |||||||||| ||||| | ||||||| ||  ||||  | ||||||||||||||||| ||| ||| |||||| |||||| ||||||    
T  7674739 agaacttatggaaacaacttatgacatgtttataaggtgttttcagcttattttcacaaattctccaagatagcttatgaaaaca 7674655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 200 - 252
Target Start/End: Complemental strand, 7985030 - 7984978
Alignment:
Q  200 cataaacttttttcagcttattttcataaactcttcaagatggcttataaaaa 252  Q
    ||||| || ||||||||||||||||||||| ||| |||||| |||||| ||||    
T  7985030 cataagctgttttcagcttattttcataaattctccaagatagcttatgaaaa 7984978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 168 - 240
Target Start/End: Complemental strand, 8090029 - 8089957
Alignment:
Q  168 agagaacttatgaaaacagcctatgacaggtccataaacttttttcagcttattttcataaactcttcaagat 240  Q
    ||||| |||||||||||| | ||||| |  | | ||| || |||||||||||||||||||| |||||||||||    
T  8090029 agagagcttatgaaaacaacttatgatatattcctaagctgttttcagcttattttcataagctcttcaagat 8089957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 169 - 257
Target Start/End: Complemental strand, 17827616 - 17827528
Alignment:
Q  169 gagaacttatgaaaacagcctatgacaggtccataaacttttttcagcttattttcataaactcttcaagatggcttataaaaacaact 257  Q
    ||||||||| ||||||| | ||||| | || | |||| | |||||||||||||||| ||| ||||  ||||| ||||| ||||||||||    
T  17827616 gagaacttaggaaaacaacttatgaaatgttcgtaaattattttcagcttattttcgtaacctctctaagatagcttacaaaaacaact 17827528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 209 - 280
Target Start/End: Original strand, 35445861 - 35445933
Alignment:
Q  209 ttttcagcttattttcataaactcttcaagatggcttataaaaacaac-tacaacttatacaaaaacaattta 280  Q
    |||||| |||||||||||||| ||| |||||| ||||| || |||| | || ||||||||| |||||||||||    
T  35445861 ttttcaccttattttcataaattctccaagatagcttacaagaacaccttataacttatacgaaaacaattta 35445933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 181 - 257
Target Start/End: Original strand, 40205064 - 40205140
Alignment:
Q  181 aaacagcctatgacaggtccataaacttttttcagcttattttcataaactcttcaagatggcttataaaaacaact 257  Q
    ||||||| ||| ||| |||||||| || ||||||||||||||  |||| |||| || ||| |||||| |||||||||    
T  40205064 aaacagcttataacatgtccataatctgttttcagcttatttctataagctctccaggatagcttatgaaaacaact 40205140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 166 - 257
Target Start/End: Complemental strand, 39980825 - 39980733
Alignment:
Q  166 taagagaacttatgaaaacagcctatgacaggtc-cataaacttttttcagcttattttcataaactcttcaagatggcttataaaaacaact 257  Q
    |||||||||||||||||||||| |||||| |||  ||||| ||||||||| |||||||||||||  ||| ||| || ||||||||||||||||    
T  39980825 taagagaacttatgaaaacagcttatgactggtttcataagcttttttcaacttattttcataagttctccaatatagcttataaaaacaact 39980733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 169 - 286
Target Start/End: Complemental strand, 21367760 - 21367641
Alignment:
Q  169 gagaacttatgaaaacagcctatgacag-gtccataaacttttttcagcttattttcataaactcttcaagatggcttataaaaacaac-tacaacttat 266  Q
    ||||||||||||||||||| |||||||  || || || || ||||||||||||||||||||  ||| |||||| |||||| |||||||| || |  ||||    
T  21367760 gagaacttatgaaaacagcttatgacattgttcacaagctgttttcagcttattttcataagttctccaagatagcttatgaaaacaacttatacattat 21367661  T
Q  267 acaaaaacaatttaacttta 286  Q
    || |||||||||||||||||    
T  21367660 acgaaaacaatttaacttta 21367641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 169 - 288
Target Start/End: Original strand, 402519 - 402640
Alignment:
Q  169 gagaacttatgaaaacagcctatgacag-gtccataaacttttttcagcttattttcataaactcttcaagatggcttataaaaacaac-tacaacttat 266  Q
    |||||| |||||||||||| |||||||  || ||||| || ||||||||||| ||||| ||  |||||||||| | ||||||||||| | || |||||||    
T  402519 gagaacgtatgaaaacagcttatgacattgttcataagctgttttcagcttaatttcacaagttcttcaagatagattataaaaacagcttataacttat 402618  T
Q  267 acaaaaacaatttaactttaat 288  Q
    || |||||||||||| ||||||    
T  402619 acgaaaacaatttaaatttaat 402640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 172 - 248
Target Start/End: Original strand, 23808045 - 23808121
Alignment:
Q  172 aacttatgaaaacagcctatgacaggtccataaacttttttcagcttattttcataaactcttcaagatggcttata 248  Q
    ||||||||||| |||| ||||||| || || ||| | |||||| |||||||||||||||||| |||||| |||||||    
T  23808045 aacttatgaaagcagcttatgacatgttcacaaattgttttcatcttattttcataaactctccaagatagcttata 23808121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 209 - 257
Target Start/End: Complemental strand, 36887556 - 36887508
Alignment:
Q  209 ttttcagcttattttcataaactcttcaagatggcttataaaaacaact 257  Q
    ||||||||||||||||||||  ||||||||||||||||| |||||||||    
T  36887556 ttttcagcttattttcataagttcttcaagatggcttatgaaaacaact 36887508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 174 - 221
Target Start/End: Complemental strand, 24624297 - 24624250
Alignment:
Q  174 cttatgaaaacagcctatgacaggtccataaacttttttcagcttatt 221  Q
    |||||||||||||| ||||||| ||||||||||| |||||||||||||    
T  24624297 cttatgaaaacagcttatgacatgtccataaactgttttcagcttatt 24624250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 166 - 233
Target Start/End: Complemental strand, 53952143 - 53952076
Alignment:
Q  166 taagagaacttatgaaaacagcctatgacaggtccataaacttttttcagcttattttcataaactct 233  Q
    ||||||||||||||||||||||  || ||| || ||| | || |||||||||||||||||||||||||    
T  53952143 taagagaacttatgaaaacagctgataacatgttcatgagctgttttcagcttattttcataaactct 53952076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 189 - 286
Target Start/End: Complemental strand, 52619075 - 52618977
Alignment:
Q  189 tatgacaggtccataaacttttttcagcttattttcataaactcttcaagatggcttataaaaacaac-tacaacttatacaaaaacaatttaacttta 286  Q
    ||||||| || ||||| || |||||| |||||||||| || ||||||||||| |||| | |||||| | || ||||||||  |||||||||||||||||    
T  52619075 tatgacatgttcataagctattttcaccttattttcacaagctcttcaagatagcttgtgaaaacagcttataacttatatgaaaacaatttaacttta 52618977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 206 - 286
Target Start/End: Original strand, 35959471 - 35959552
Alignment:
Q  206 cttttttcagcttattttcataaactcttcaagatggcttataaaaacaac-tacaacttatacaaaaacaatttaacttta 286  Q
    |||||||||||||||||||| ||| |||  || || ||||||| ||||||| |||| | |||||||||| ||||||||||||    
T  35959471 cttttttcagcttattttcaaaaattctctaatatagcttatagaaacaacttacagcatatacaaaaataatttaacttta 35959552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 179 - 240
Target Start/End: Complemental strand, 36139960 - 36139899
Alignment:
Q  179 gaaaacagcctatgacaggtccataaacttttttcagcttattttcataaactcttcaagat 240  Q
    ||||||||| ||||||| || || || || |||||||||||||||||||| |||||||||||    
T  36139960 gaaaacagcttatgacatgttcacaagctgttttcagcttattttcataagctcttcaagat 36139899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 170 - 282
Target Start/End: Complemental strand, 45541662 - 45541549
Alignment:
Q  170 agaacttatgaaaacagcctatgacaggtccataaacttttttcagcttattttcataaactcttcaagatggcttat-aaaaacaactacaacttatac 268  Q
    |||||||||||||||||| ||||||| || ||||| || ||||||| ||||| ||||||  | | |||||| |||||| ||||  ||||| | |||||||    
T  45541662 agaacttatgaaaacagcttatgacatgttcataagctgttttcaggttattctcataagttatccaagatagcttatgaaaataaactatagcttatac 45541563  T
Q  269 aaaaacaatttaac 282  Q
     |||| ||||||||    
T  45541562 gaaaataatttaac 45541549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 201 - 281
Target Start/End: Complemental strand, 47132391 - 47132310
Alignment:
Q  201 ataaacttttttcagcttattttcataaactcttcaagatggcttataaaaacaa-ctacaacttatacaaaaacaatttaa 281  Q
    |||| ||||||||| |||||||||||||  ||| ||| || |||||||||||||| ||| | | ||||||||||||||||||    
T  47132391 ataagcttttttcaacttattttcataacttctccaatatagcttataaaaacaacctatagcatatacaaaaacaatttaa 47132310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 172 - 228
Target Start/End: Complemental strand, 5391968 - 5391912
Alignment:
Q  172 aacttatgaaaacagcctatgacaggtccataaacttttttcagcttattttcataa 228  Q
    |||||||||||||||| ||||||| || ||||| || |||||| |||||||||||||    
T  5391968 aacttatgaaaacagcttatgacatgttcataagctgttttcaacttattttcataa 5391912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 228
Target Start/End: Complemental strand, 47132087 - 47132027
Alignment:
Q  168 agagaacttatgaaaacagcctatgacaggtccataaacttttttcagcttattttcataa 228  Q
    |||||||||||||||||| | |||| ||  |||||||||| ||||||||||||||| ||||    
T  47132087 agagaacttatgaaaacaacttatgtcatatccataaactgttttcagcttatttttataa 47132027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 170 - 277
Target Start/End: Original strand, 54837013 - 54837121
Alignment:
Q  170 agaacttatgaaaacagcctatgacaggtccataaacttttttcagcttattttcataaactcttcaagatggcttataaaaacaac-tacaacttatac 268  Q
    |||| ||||||||||||| ||||||| || |||||  | ||||| ||||||||| |||| || | |||||| |||||| |||| ||| ||||  ||||||    
T  54837013 agaatttatgaaaacagcttatgacatgttcataacttgttttccgcttatttttataagctgtccaagatagcttatgaaaataacttacagtttatac 54837112  T
Q  269 aaaaacaat 277  Q
    |||||||||    
T  54837113 aaaaacaat 54837121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 174 - 233
Target Start/End: Original strand, 27290884 - 27290943
Alignment:
Q  174 cttatgaaaacagcctatgacaggtccataaacttttttcagcttattttcataaactct 233  Q
    |||||||||||||| ||||||| | |||||| || |||||||||||||| ||| ||||||    
T  27290884 cttatgaaaacagcttatgacatgcccataagctgttttcagcttatttccatgaactct 27290943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 169 - 247
Target Start/End: Original strand, 27896148 - 27896226
Alignment:
Q  169 gagaacttatgaaaacagcctatgacaggtccataaacttttttcagcttattttcataaactcttcaagatggcttat 247  Q
    ||||| |||||||||||||  |||||| || |||||| | |  |||||||||||||| ||||||| |||||| ||||||    
T  27896148 gagaatttatgaaaacagctcatgacaagttcataaattgtcgtcagcttattttcaaaaactctccaagatagcttat 27896226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 200 - 254
Target Start/End: Original strand, 35394507 - 35394561
Alignment:
Q  200 cataaacttttttcagcttattttcataaactcttcaagatggcttataaaaaca 254  Q
    ||||| || |||||| |||||||||||||| |||||||||| |||||| ||||||    
T  35394507 cataagctgttttcaacttattttcataaattcttcaagatagcttatgaaaaca 35394561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 170 - 228
Target Start/End: Original strand, 39723219 - 39723277
Alignment:
Q  170 agaacttatgaaaacagcctatgacaggtccataaacttttttcagcttattttcataa 228  Q
    ||||||||| |||||||| ||||||| || ||||| || ||||||||||||| ||||||    
T  39723219 agaacttatcaaaacagcttatgacatgttcataagctgttttcagcttattctcataa 39723277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 169 - 286
Target Start/End: Original strand, 48286788 - 48286906
Alignment:
Q  169 gagaacttatgaaaacagcctatgacaggtccataaacttttttcagcttattttcataaactcttcaagatggcttataaaaaca-actacaacttata 267  Q
    ||||||||||||||||| |||| |||| ||||||||||  || |||||||||||  |||| |||| || |||  ||||| ||||||   || ||||||||    
T  48286788 gagaacttatgaaaacaacctacgacatgtccataaaccgttatcagcttatttctataagctctacatgataacttatgaaaacagtttataacttata 48286887  T
Q  268 caaaaacaatttaacttta 286  Q
       ||||||||||||||||    
T  48286888 tggaaacaatttaacttta 48286906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 255
Target Start/End: Complemental strand, 901987 - 901930
Alignment:
Q  198 tccataaacttttttcagcttattttcataaactcttcaagatggcttataaaaacaa 255  Q
    ||||||| ||||||||| |||||||||||||  ||| ||| || ||||||||||||||    
T  901987 tccataagcttttttcaacttattttcataagttctccaatatagcttataaaaacaa 901930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 254
Target Start/End: Original strand, 20502046 - 20502131
Alignment:
Q  169 gagaacttatgaaaacagcctatgacaggtccataaacttttttcagcttattttcataaactcttcaagatggcttataaaaaca 254  Q
    ||||||||||| | ||||| ||||||| |||| | |  | ||||||||||||| |||||| ||||||| ||| |||||| ||||||    
T  20502046 gagaacttatgcagacagcatatgacatgtccgtcatttgttttcagcttattctcataagctcttcaggatagcttatgaaaaca 20502131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 254
Target Start/End: Original strand, 30573892 - 30573977
Alignment:
Q  169 gagaacttatgaaaacagcctatgacaggtccataaacttttttcagcttattttcataaactcttcaagatggcttataaaaaca 254  Q
    |||||||||||||||||   |||| || || ||||| || |||||||||||| ||||| | |||| |||||| |||||| ||||||    
T  30573892 gagaacttatgaaaacaaattatggcatgttcataagctgttttcagcttatgttcatcagctctccaagatagcttatgaaaaca 30573977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 254
Target Start/End: Original strand, 33972740 - 33972797
Alignment:
Q  197 gtccataaacttttttcagcttattttcataaactcttcaagatggcttataaaaaca 254  Q
    |||||||| |||||||||||||||||||| ||  ||| ||| || |||||||||||||    
T  33972740 gtccataaccttttttcagcttattttcacaagttctccaaaatagcttataaaaaca 33972797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 236
Target Start/End: Complemental strand, 36101650 - 36101593
Alignment:
Q  179 gaaaacagcctatgacaggtccataaacttttttcagcttattttcataaactcttca 236  Q
    ||||||||| ||||||| || || || || |||||||||||||||||||| |||||||    
T  36101650 gaaaacagcttatgacatgttcacaagctgttttcagcttattttcataagctcttca 36101593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 286
Target Start/End: Original strand, 36631066 - 36631147
Alignment:
Q  206 cttttttcagcttattttcataaactcttcaagatggcttataaaaacaac-tacaacttatacaaaaacaatttaacttta 286  Q
    |||||||| ||||||||||||||  ||| ||| || ||| ||||||||||| || | | | |||||||||||||||||||||    
T  36631066 cttttttctgcttattttcataagttctccaatatagctcataaaaacaacttatagcatgtacaaaaacaatttaacttta 36631147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 286
Target Start/End: Original strand, 39602193 - 39602305
Alignment:
Q  174 cttatgaaaacagcctatgacaggtccataaacttttttcagcttattttcataaactcttcaagatggcttataaaaacaac-tacaacttatacaaaa 272  Q
    |||||||| ||||| ||||||| || |||||| | |||||| |||||||||||||  |||  ||||| |||||| |||||| | || |||||||||   |    
T  39602193 cttatgaagacagcttatgacatgttcataaattgttttcaacttattttcataagttctcaaagatagcttatgaaaacagcttataacttatac-gca 39602291  T
Q  273 acaatttaacttta 286  Q
    ||||||||||||||    
T  39602292 acaatttaacttta 39602305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 176 - 252
Target Start/End: Original strand, 16790364 - 16790439
Alignment:
Q  176 tatgaaaacagcctatgacaggtccataaacttttttcagcttattttcataaactcttcaagatggcttataaaaa 252  Q
    |||||||| ||| |||||||| ||||||| || ||||||| |||||||||||| || | |||||| |||||| ||||    
T  16790364 tatgaaaatagcttatgacag-tccataagctgttttcagtttattttcataagctatccaagatagcttatgaaaa 16790439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 42)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 168 - 254
Target Start/End: Complemental strand, 37811945 - 37811859
Alignment:
Q  168 agagaacttatgaaaacagcctatgacaggtccataaacttttttcagcttattttcataaactcttcaagatggcttataaaaaca 254  Q
    |||||||||||||||||||| ||||||| || |||||||| |||||| ||||||| ||| | |||| || |||||||||| ||||||    
T  37811945 agagaacttatgaaaacagcttatgacatgttcataaactgttttcaacttatttccattagctctccatgatggcttatgaaaaca 37811859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 209 - 280
Target Start/End: Complemental strand, 43332536 - 43332464
Alignment:
Q  209 ttttcagcttattttcataaactcttcaagatggcttataaaaacaac-tacaacttatacaaaaacaattta 280  Q
    ||||||||||||||| |||| ||||||||||| |||||| |||||| | |||||||||||||||| |||||||    
T  43332536 ttttcagcttattttaataagctcttcaagatagcttatgaaaacagcttacaacttatacaaaaccaattta 43332464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 200 - 286
Target Start/End: Original strand, 27820346 - 27820433
Alignment:
Q  200 cataaacttttttcagcttattttcataaactcttcaagatggcttataaaaacaac-tacaacttatacaaaaacaatttaacttta 286  Q
    ||||| || ||||||||||||||||||||| ||| |||||| ||||||||||||| | || | |||||||| |||||||||| |||||    
T  27820346 cataagctattttcagcttattttcataaattctccaagatagcttataaaaacagcatatagcttatacataaacaatttagcttta 27820433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 171 - 267
Target Start/End: Complemental strand, 35925780 - 35925686
Alignment:
Q  171 gaacttatgaaaacagcctatgacaggtccataaacttttttcagcttattttcataaactcttcaagatggcttataaaaacaactacaacttata 267  Q
    ||||||||||||||||| ||||||| || ||||| || |||||| ||||||| |||||||||| || ||| ||||||  ||||||  ||||||||||    
T  35925780 gaacttatgaaaacagcttatgacatgttcataagctgttttcaacttatttccataaactctccatgatagcttatggaaacaa--acaacttata 35925686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 200 - 280
Target Start/End: Original strand, 51695504 - 51695585
Alignment:
Q  200 cataaacttttttcagcttattttcataaactcttcaagatggcttataaaaacaact-acaacttatacaaaaacaattta 280  Q
    ||||| || ||||||||||||||||||||| ||| |||||| |||||| |||||| || | ||||||||| |||||||||||    
T  51695504 cataagctattttcagcttattttcataaattctccaagatagcttatgaaaacatctgataacttatacgaaaacaattta 51695585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 168 - 248
Target Start/End: Original strand, 28689429 - 28689509
Alignment:
Q  168 agagaacttatgaaaacagcctatgacaggtccataaacttttttcagcttattttcataaactcttcaagatggcttata 248  Q
    |||||||||| | ||||||| ||||||| ||||||||  | |||||||||||||||||||| || | |||||| |||||||    
T  28689429 agagaacttacggaaacagcttatgacatgtccataagttgttttcagcttattttcataagctttccaagatagcttata 28689509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 170 - 284
Target Start/End: Original strand, 1565514 - 1565629
Alignment:
Q  170 agaacttatgaaaacagcctatgacaggtccataaacttttttcagcttattttcataaactcttcaagatggcttataaaaacaac-tacaacttatac 268  Q
    |||||||| ||| ||||| ||||||| || ||||| || |||||||||||||||||| | |||| ||| || | |||  |||||| | ||||  ||||||    
T  1565514 agaacttaggaagacagcttatgacatgtgcataagctgttttcagcttattttcatgagctctccaaaatagattaagaaaacagcttacactttatac 1565613  T
Q  269 aaaaacaatttaactt 284  Q
    ||||||||||||||||    
T  1565614 aaaaacaatttaactt 1565629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 174 - 233
Target Start/End: Original strand, 11639399 - 11639458
Alignment:
Q  174 cttatgaaaacagcctatgacaggtccataaacttttttcagcttattttcataaactct 233  Q
    |||||||||||||| ||||||| |||||||| || |||| ||||||||||||||| ||||    
T  11639399 cttatgaaaacagcttatgacatgtccataagctgtttttagcttattttcataagctct 11639458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 169 - 282
Target Start/End: Original strand, 17603361 - 17603476
Alignment:
Q  169 gagaacttatgaaaacagcctatgacaggtc-cataaacttttttcagcttattttcataaactcttcaagatggcttataaaaacaac-tacaacttat 266  Q
    ||||||||| ||||||||| |||||||  |  |||||||||||| || |||||||||| ||  ||| ||| || ||||||||||||||| || | | |||    
T  17603361 gagaacttacgaaaacagcttatgacaattttcataaactttttacaacttattttcagaagttctccaatatagcttataaaaacaacttatagcatat 17603460  T
Q  267 acaaaaacaatttaac 282  Q
    ||||||||||||||||    
T  17603461 acaaaaacaatttaac 17603476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 170 - 257
Target Start/End: Original strand, 37842334 - 37842421
Alignment:
Q  170 agaacttatgaaaacagcctatgacaggtccataaacttttttcagcttattttcataaactcttcaagatggcttataaaaacaact 257  Q
    |||||||||||||||| |  |||||| || ||||| |  ||||||||||||||| ||||  |||||||||| |||||| |||||||||    
T  37842334 agaacttatgaaaacatctaatgacatgttcataagcagttttcagcttatttttataagttcttcaagatagcttatgaaaacaact 37842421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 203 - 284
Target Start/End: Complemental strand, 7472369 - 7472287
Alignment:
Q  203 aaacttttttcagcttattttcataaactcttcaagatggcttataaaaacaac-tacaacttatacaaaaacaatttaactt 284  Q
    ||||| |||||||||||||||||||| |||| |||||| ||||||  ||||| | || |  ||||||||||||||||||||||    
T  7472369 aaactgttttcagcttattttcataagctctccaagatagcttatggaaacagcttatagattatacaaaaacaatttaactt 7472287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 164 - 257
Target Start/End: Original strand, 38503437 - 38503531
Alignment:
Q  164 cgtaagagaacttatgaaaacagcctatgacag-gtccataaacttttttcagcttattttcataaactcttcaagatggcttataaaaacaact 257  Q
    |||| ||||||||||| |||||||||||||||  || |||||  | ||||||||||||||||||||  ||| |||||| ||| | ||||||||||    
T  38503437 cgtacgagaacttatggaaacagcctatgacattgttcataagttgttttcagcttattttcataagttctccaagatagctaacaaaaacaact 38503531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 209 - 258
Target Start/End: Complemental strand, 3924676 - 3924627
Alignment:
Q  209 ttttcagcttattttcataaactcttcaagatggcttataaaaacaacta 258  Q
    ||||| |||||||| ||||||||||||| ||| |||||||||||||||||    
T  3924676 ttttcggcttatttccataaactcttcaggatagcttataaaaacaacta 3924627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 170 - 239
Target Start/End: Original strand, 7575678 - 7575746
Alignment:
Q  170 agaacttatgaaaacagcctatgacaggtccataaacttttttcagcttattttcataaactcttcaaga 239  Q
    ||||||||||||||  || |||||||||| ||||| || ||| ||||||||||||||||||||| |||||    
T  7575678 agaacttatgaaaatggcttatgacaggttcataagctgttt-cagcttattttcataaactctccaaga 7575746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 175 - 248
Target Start/End: Original strand, 19092368 - 19092440
Alignment:
Q  175 ttatgaaaacagcctatgacaggtccataaacttttttcagcttattttcataaactcttcaagatggcttata 248  Q
    ||||||||| || |||||||| ||| ||||||| |||||| ||||||||||||| ||||||| ||| |||||||    
T  19092368 ttatgaaaatagtctatgacatgtc-ataaactgttttcaccttattttcataagctcttcaggatagcttata 19092440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 181 - 254
Target Start/End: Complemental strand, 27140558 - 27140485
Alignment:
Q  181 aaacagcctatgacaggtccataaacttttttcagcttattttcataaactcttcaagatggcttataaaaaca 254  Q
    ||||||| ||||||| ||||||||  | |||||||||||||| ||||| |||| || ||| |||||||||||||    
T  27140558 aaacagcttatgacatgtccataagttgttttcagcttatttgcataagctctccatgatagcttataaaaaca 27140485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 169 - 233
Target Start/End: Complemental strand, 10439778 - 10439714
Alignment:
Q  169 gagaacttatgaaaacagcctatgacaggtccataaacttttttcagcttattttcataaactct 233  Q
    |||| ||||||||||||  |||||||| |||||||| ||  ||||||||||||| ||||||||||    
T  10439778 gagagcttatgaaaacaaactatgacatgtccataatctgctttcagcttatttccataaactct 10439714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 169 - 282
Target Start/End: Original strand, 3233992 - 3234107
Alignment:
Q  169 gagaacttatgaaaacagcctatgacaggtc-cataaacttttttcagcttattttcataaactcttcaagatggcttataaaaacaac-tacaacttat 266  Q
    ||||||||||||||||| | ||| |||| |  |||||  |||||||  |||||||||||||  ||| ||| || ||||||||||||||| || | | |||    
T  3233992 gagaacttatgaaaacaacttataacagttttcataagtttttttctacttattttcataagttctccaatatagcttataaaaacaacttatagcatat 3234091  T
Q  267 acaaaaacaatttaac 282  Q
    ||||||||||||||||    
T  3234092 acaaaaacaatttaac 3234107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 200 - 255
Target Start/End: Original strand, 27820205 - 27820260
Alignment:
Q  200 cataaacttttttcagcttattttcataaactcttcaagatggcttataaaaacaa 255  Q
    ||||| || ||||||||||||||||||||| |||| ||||| ||||||| ||||||    
T  27820205 cataagctattttcagcttattttcataaattctttaagatagcttatacaaacaa 27820260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 172 - 247
Target Start/End: Original strand, 37593665 - 37593740
Alignment:
Q  172 aacttatgaaaacagcctatgacaggtccataaacttttttcagcttattttcataaactcttcaagatggcttat 247  Q
    |||| ||||| ||| | ||||||| || ||||| || |||||||||||||||||||| |||||||| || ||||||    
T  37593665 aactaatgaacacaacttatgacatgttcataagctgttttcagcttattttcataagctcttcaaaatagcttat 37593740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 170 - 233
Target Start/End: Complemental strand, 43338207 - 43338144
Alignment:
Q  170 agaacttatgaaaacagcctatgacaggtccataaacttttttcagcttattttcataaactct 233  Q
    |||||||||| ||||||| ||||||| || ||||| || |||||||| ||||||||||| ||||    
T  43338207 agaacttatggaaacagcttatgacatgttcataatctattttcagcctattttcataagctct 43338144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 169 - 252
Target Start/End: Complemental strand, 44422791 - 44422708
Alignment:
Q  169 gagaacttatgaaaacagcctatgacaggtccataaacttttttcagcttattttcataaactcttcaagatggcttataaaaa 252  Q
    |||| |||||||||| ||| ||||||| |||||||| ||   | |||||||||||||||| |||| || ||| |||||||||||    
T  44422791 gagagcttatgaaaatagcttatgacatgtccataagctgactacagcttattttcataagctctccaggatagcttataaaaa 44422708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 197 - 252
Target Start/End: Complemental strand, 52286742 - 52286687
Alignment:
Q  197 gtccataaacttttttcagcttattttcataaactcttcaagatggcttataaaaa 252  Q
    |||||||| || |||| ||||||||| |||||||||||||||||| ||||| ||||    
T  52286742 gtccataagctatttttagcttatttccataaactcttcaagatgacttatgaaaa 52286687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 180 - 254
Target Start/End: Original strand, 4202140 - 4202214
Alignment:
Q  180 aaaacagcctatgacaggtccataaacttttttcagcttattttcataaactcttcaagatggcttataaaaaca 254  Q
    |||||||| ||||||| |||||||| || |||||||||||||||| ||| |||| | |||| |||| | ||||||    
T  4202140 aaaacagcttatgacatgtccataagctattttcagcttattttcgtaagctctgccagatagcttttgaaaaca 4202214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 207 - 284
Target Start/End: Complemental strand, 6557025 - 6556947
Alignment:
Q  207 ttttttcagcttattttcataaactcttcaagatggcttataaaaacaact-acaacttatacaaaaacaatttaactt 284  Q
    |||||| |||||||| ||||||  |||| || ||  ||||||||||||||| | ||| |||||||||||||||||||||    
T  6557025 tttttttagcttattgtcataagttctttaatataacttataaaaacaacttataacatatacaaaaacaatttaactt 6556947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 170 - 228
Target Start/End: Complemental strand, 29723580 - 29723522
Alignment:
Q  170 agaacttatgaaaacagcctatgacaggtccataaacttttttcagcttattttcataa 228  Q
    |||||| ||| ||||||| ||||||| ||||||||||| |||||| ||||||| |||||    
T  29723580 agaactaatggaaacagcttatgacatgtccataaactgttttcaacttatttacataa 29723522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 169 - 239
Target Start/End: Original strand, 31517718 - 31517788
Alignment:
Q  169 gagaacttatgaaaacagcctatgacaggtccataaacttttttcagcttattttcataaactcttcaaga 239  Q
    |||||||||| |||||| |  |||||| || ||||| || |||||||||||||||||||| |||| |||||    
T  31517718 gagaacttatcaaaacaactcatgacatgttcataagctgttttcagcttattttcataagctctccaaga 31517788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 209 - 286
Target Start/End: Complemental strand, 34290288 - 34290210
Alignment:
Q  209 ttttcagcttattttcataaactcttcaagatggcttataaaaacaac-tacaacttatacaaaaacaatttaacttta 286  Q
    ||||||||||||||||||||  |||||||||| |||||| |||||| | || | |||||||||||  || |||||||||    
T  34290288 ttttcagcttattttcataagttcttcaagatagcttatgaaaacagcttatagcttatacaaaataaaattaacttta 34290210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 207 - 257
Target Start/End: Original strand, 37769676 - 37769726
Alignment:
Q  207 ttttttcagcttattttcataaactcttcaagatggcttataaaaacaact 257  Q
    |||||||||||| |||||||||| ||| |||||  ||||||||||||||||    
T  37769676 ttttttcagcttgttttcataaattctgcaagacagcttataaaaacaact 37769726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 200 - 254
Target Start/End: Complemental strand, 45975751 - 45975697
Alignment:
Q  200 cataaacttttttcagcttattttcataaactcttcaagatggcttataaaaaca 254  Q
    ||||| || ||||||||||||||||||||| ||| |||||| |||||| ||||||    
T  45975751 cataagctgttttcagcttattttcataaattctccaagatagcttatgaaaaca 45975697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 233
Target Start/End: Complemental strand, 6292574 - 6292521
Alignment:
Q  180 aaaacagcctatgacaggtccataaacttttttcagcttattttcataaactct 233  Q
    |||||||| ||||||| || ||||| || |||||||||||||||||||| ||||    
T  6292574 aaaacagcttatgacatgttcataagctgttttcagcttattttcataagctct 6292521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 246
Target Start/End: Complemental strand, 10280741 - 10280664
Alignment:
Q  169 gagaacttatgaaaacagcctatgacaggtccataaacttttttcagcttattttcataaactcttcaagatggctta 246  Q
    ||||||||||||||||| | |||  || || ||||| ||||| |||||||||||||||||  |||| ||||| |||||    
T  10280741 gagaacttatgaaaacaacttatttcatgttcataagcttttgtcagcttattttcataagttcttgaagatagctta 10280664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 251
Target Start/End: Complemental strand, 47432150 - 47432105
Alignment:
Q  206 cttttttcagcttattttcataaactcttcaagatggcttataaaa 251  Q
    |||||||||||||||||||||||| ||||||| ||  |||||||||    
T  47432150 cttttttcagcttattttcataaattcttcaatataacttataaaa 47432105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 172 - 240
Target Start/End: Original strand, 4768810 - 4768878
Alignment:
Q  172 aacttatgaaaacagcctatgacaggtccataaacttttttcagcttattttcataaactcttcaagat 240  Q
    |||||| ||||||||| || |||| ||||||||  | |||||||||||||| |||||| ||| ||||||    
T  4768810 aacttacgaaaacagcttacgacatgtccataacttgttttcagcttatttccataaattctccaagat 4768878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 170 - 254
Target Start/End: Original strand, 7136977 - 7137061
Alignment:
Q  170 agaacttatgaaaacagcctatgacaggtccataaacttttttcagcttattttcataaactcttcaagatggcttataaaaaca 254  Q
    ||||||||||||||  || |||||||  | |||||  | ||||||||||||||||||||  ||| |||||| |||||| ||||||    
T  7136977 agaacttatgaaaatcgcttatgacatattcataagttattttcagcttattttcataagttctccaagatagcttatgaaaaca 7137061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 169 - 233
Target Start/End: Original strand, 10199386 - 10199450
Alignment:
Q  169 gagaacttatgaaaacagcctatgacaggtccataaacttttttcagcttattttcataaactct 233  Q
    ||||||| ||||||| ||| ||||||| || |||||  | |||||||||||||||||||| ||||    
T  10199386 gagaactcatgaaaatagcttatgacatgttcataagttgttttcagcttattttcataagctct 10199450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 209 - 257
Target Start/End: Original strand, 26779943 - 26779991
Alignment:
Q  209 ttttcagcttattttcataaactcttcaagatggcttataaaaacaact 257  Q
    |||||| |||||||||||||  |||||||||| |||||| |||||||||    
T  26779943 ttttcaacttattttcataagttcttcaagatagcttatgaaaacaact 26779991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 181 - 237
Target Start/End: Original strand, 30815643 - 30815699
Alignment:
Q  181 aaacagcctatgacaggtccataaacttttttcagcttattttcataaactcttcaa 237  Q
    ||||||| ||||||| || |||||| | ||||||||||||||||||||  |||||||    
T  30815643 aaacagcttatgacatgttcataaaatgttttcagcttattttcataagttcttcaa 30815699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 197 - 233
Target Start/End: Complemental strand, 33975634 - 33975598
Alignment:
Q  197 gtccataaacttttttcagcttattttcataaactct 233  Q
    ||||||||||| |||||||||||||||||||| ||||    
T  33975634 gtccataaactattttcagcttattttcataagctct 33975598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 169 - 229
Target Start/End: Complemental strand, 35669064 - 35669004
Alignment:
Q  169 gagaacttatgaaaacagcctatgacaggtccataaacttttttcagcttattttcataaa 229  Q
    |||||||||||||| |||| ||||| | ||||||||| | |||||| ||||||| ||||||    
T  35669064 gagaacttatgaaagcagcttatgatatgtccataaattgttttcaacttatttccataaa 35669004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 169 - 237
Target Start/End: Original strand, 38170668 - 38170736
Alignment:
Q  169 gagaacttatgaaaacagcctatgacaggtccataaacttttttcagcttattttcataaactcttcaa 237  Q
    |||| |||||||||||||| ||||||| || |||||  | |||||||||| ||||| ||| ||||||||    
T  38170668 gagagcttatgaaaacagcttatgacatgttcataagttgttttcagcttgttttcctaagctcttcaa 38170736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 209 - 249
Target Start/End: Complemental strand, 51190900 - 51190860
Alignment:
Q  209 ttttcagcttattttcataaactcttcaagatggcttataa 249  Q
    ||||||||||||||||||||  |||||||||| ||||||||    
T  51190900 ttttcagcttattttcataagttcttcaagatagcttataa 51190860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 206 - 286
Target Start/End: Original strand, 17944358 - 17944439
Alignment:
Q  206 cttttttcagcttattttcataaactcttcaagatggcttataaaaacaact-acaacttatacaaaaacaatttaacttta 286  Q
    |||||||||||||| ||||||||| | | ||||||  ||||| ||||||||| ||||| |||||||||||||||||||||||    
T  17944358 cttttttcagcttaatttcataaattatccaagataacttatgaaaacaacttacaacatatacaaaaacaatttaacttta 17944439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 169 - 282
Target Start/End: Original strand, 19302540 - 19302651
Alignment:
Q  169 gagaacttatgaaaacagcctatgacaggtc-cataaacttttttcagcttattttcataaactcttcaagatggcttataaaaacaac-tacaacttat 266  Q
    ||||| ||||||||||||| |||||||  |  ||||||||||||||| |||||||||||||  ||||    || ||||||||||||||| || ||| |||    
T  19302540 gagaatttatgaaaacagcttatgacaattttcataaacttttttcaacttattttcataagttctt----atagcttataaaaacaacttataacatat 19302635  T
Q  267 acaaaaacaatttaac 282  Q
    ||||||||||||||||    
T  19302636 acaaaaacaatttaac 19302651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 174 - 286
Target Start/End: Complemental strand, 12110447 - 12110334
Alignment:
Q  174 cttatgaaaacagcctatgacaggtccataaacttttttcagcttattttcataaactcttcaagatggcttataaaaacaac-tacaacttatacaaaa 272  Q
    |||||||||||| | ||||||| || || ||||| |||| || ||||||||||||  |||||||||| |||||| |||||| | || | ||||||| |||    
T  12110447 cttatgaaaacaacttatgacatgttcacaaactgtttttagattattttcataagttcttcaagatagcttatgaaaacagcttatagcttataccaaa 12110348  T
Q  273 acaatttaacttta 286  Q
    ||||||| ||||||    
T  12110347 acaatttgacttta 12110334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 167 - 220
Target Start/End: Complemental strand, 19719100 - 19719047
Alignment:
Q  167 aagagaacttatgaaaacagcctatgacaggtccataaacttttttcagcttat 220  Q
    ||||||||||||||||||| | ||||||| || |||||||| ||||||||||||    
T  19719100 aagagaacttatgaaaacaacttatgacatgttcataaactgttttcagcttat 19719047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 204 - 252
Target Start/End: Original strand, 12792576 - 12792624
Alignment:
Q  204 aacttttttcagcttattttcataaactcttcaagatggcttataaaaa 252  Q
    |||| |||||||||||||||||||| ||||||||||| |||||| ||||    
T  12792576 aactgttttcagcttattttcataagctcttcaagatagcttatgaaaa 12792624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 174 - 246
Target Start/End: Original strand, 27626106 - 27626178
Alignment:
Q  174 cttatgaaaacagcctatgacaggtccataaacttttttcagcttattttcataaactcttcaagatggctta 246  Q
    |||||| ||||||| ||||||| ||||||||||| |||| | ||||||| ||||| ||||||| ||| |||||    
T  27626106 cttatggaaacagcttatgacatgtccataaactgttttaaacttatttccataagctcttcatgatagctta 27626178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 172 - 255
Target Start/End: Original strand, 25670567 - 25670650
Alignment:
Q  172 aacttatgaaaacagcctatgacaggtccataaacttttttcagcttattttcataaactcttcaagatggcttataaaaacaa 255  Q
    |||||||||||||| | ||||||| ||  ||||| | ||||||||||||||||| || |||| ||||||   ||||||||||||    
T  25670567 aacttatgaaaacaacttatgacatgttaataaattgttttcagcttattttcacaagctctccaagatatgttataaaaacaa 25670650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 175 - 221
Target Start/End: Original strand, 12834946 - 12834992
Alignment:
Q  175 ttatgaaaacagcctatgacaggtccataaacttttttcagcttatt 221  Q
    ||||| ||||||| ||||||| ||||||||||| |||||||||||||    
T  12834946 ttatggaaacagcttatgacatgtccataaactgttttcagcttatt 12834992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 169 - 255
Target Start/End: Original strand, 28691813 - 28691899
Alignment:
Q  169 gagaacttatgaaaacagcctatgacaggtccataaacttttttcagcttattttcataaactcttcaagatggcttataaaaacaa 255  Q
    |||| |||||||||||||| ||||||  ||||||||| | || |||| ||||||||||||  ||| || ||| |||||| |||||||    
T  28691813 gagatcttatgaaaacagcttatgacttgtccataaattgttatcagtttattttcataagatctccaggatagcttatgaaaacaa 28691899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 169 - 231
Target Start/End: Complemental strand, 33894719 - 33894657
Alignment:
Q  169 gagaacttatgaaaacagcctatgacaggtccataaacttttttcagcttattttcataaact 231  Q
    |||| |||||||||||||| ||||||| ||||||||  | ||||||||||||||  |||||||    
T  33894719 gagagcttatgaaaacagcatatgacatgtccataagttgttttcagcttatttcaataaact 33894657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 170 - 228
Target Start/End: Original strand, 43219623 - 43219681
Alignment:
Q  170 agaacttatgaaaacagcctatgacaggtccataaacttttttcagcttattttcataa 228  Q
    ||||||||| |||||||| ||||||| || ||||| || ||||||||||||| ||||||    
T  43219623 agaacttatcaaaacagcttatgacatgttcataagctgttttcagcttattctcataa 43219681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 174 - 228
Target Start/End: Complemental strand, 44808245 - 44808191
Alignment:
Q  174 cttatgaaaacagcctatgacaggtccataaacttttttcagcttattttcataa 228  Q
    |||||||||| | | ||||||| |||||||| || ||||||||||||||||||||    
T  44808245 cttatgaaaataacttatgacatgtccataacctgttttcagcttattttcataa 44808191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 175 - 257
Target Start/End: Original strand, 46104551 - 46104633
Alignment:
Q  175 ttatgaaaacagcctatgacaggtccataaacttttttcagcttattttcataaactcttcaagatggcttataaaaacaact 257  Q
    ||||||||||| |  |||||| ||| ||||| | ||| |||||||||||||||| |||||||  || |||||| |||||||||    
T  46104551 ttatgaaaacaactcatgacatgtcaataaaatgtttccagcttattttcataagctcttcagcatagcttatgaaaacaact 46104633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 225
Target Start/End: Original strand, 13960700 - 13960757
Alignment:
Q  168 agagaacttatgaaaacagcctatgacaggtccataaacttttttcagcttattttca 225  Q
    ||||| |||||||||||||| ||| ||| |||||||| || | |||||||||||||||    
T  13960700 agagagcttatgaaaacagcttataacaagtccataagctatgttcagcttattttca 13960757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 257
Target Start/End: Original strand, 19214383 - 19214472
Alignment:
Q  169 gagaacttatgaaaacagcctatgacaggtc-cataaacttttttcagcttattttcataaactcttcaagatggcttataaaaacaact 257  Q
    |||||||||||||||||||  ||||||  |  ||||||||| ||||| |||||||||||||  ||| ||| || ||||||| ||||||||    
T  19214383 gagaacttatgaaaacagcaaatgacaattttcataaacttgtttcaacttattttcataagttctacaatatagcttatacaaacaact 19214472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 285
Target Start/End: Original strand, 28613552 - 28613629
Alignment:
Q  209 ttttcagcttattttcataaactcttcaagatggcttataaaaacaact-acaacttatacaaaaacaatttaacttt 285  Q
    |||||||||||||||| ||| ||| | || || |||||  | ||||||| | ||||||||||||||||||||||||||    
T  28613552 ttttcagcttattttcttaacctccttaaaatagcttacgacaacaacttataacttatacaaaaacaatttaacttt 28613629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 286
Target Start/End: Original strand, 46280287 - 46280368
Alignment:
Q  206 cttttttcagcttattttcataaactcttcaagatggcttataaaaacaac-tacaacttatacaaaaacaatttaacttta 286  Q
    ||||||||||| |||||||||||  ||| ||| || ||||||||||||| | || | | |||||||||||||||||| ||||    
T  46280287 cttttttcagcctattttcataagttctccaatatagcttataaaaacagcttatagcatatacaaaaacaatttaaattta 46280368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 170 - 254
Target Start/End: Complemental strand, 9050725 - 9050642
Alignment:
Q  170 agaacttatgaaaacagcctatgacaggtccataaacttttttcagcttattttcataaactcttcaagatggcttataaaaaca 254  Q
    |||||||||||||||||| |||| || || |||||  ||||||||||||||||||| ||  ||| |||||| | |||| ||||||    
T  9050725 agaacttatgaaaacagcatatgtcatgttcataat-ttttttcagcttattttcacaagttctccaagatagtttatgaaaaca 9050642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 206 - 285
Target Start/End: Complemental strand, 20269631 - 20269551
Alignment:
Q  206 cttttttcagcttattttcataaactcttcaagatggcttataaaaacaact-acaacttatacaaaaacaatttaacttt 285  Q
    ||||||||| |||||||||||||| ||| ||| |  |||||  ||||||||| | ||| | ||||||||||||||||||||    
T  20269631 cttttttcaacttattttcataaattctccaatacagcttagtaaaacaacttataacatttacaaaaacaatttaacttt 20269551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 189 - 257
Target Start/End: Original strand, 44151478 - 44151546
Alignment:
Q  189 tatgacaggtccataaacttttttcagcttattttcataaactcttcaagatggcttataaaaacaact 257  Q
    ||||||| ||||||||  | |||||||||||||| ||||| || |||||||| | |||| |||||||||    
T  44151478 tatgacatgtccataagatgttttcagcttatttccataagcttttcaagatagtttatgaaaacaact 44151546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 169 - 233
Target Start/End: Complemental strand, 46082128 - 46082064
Alignment:
Q  169 gagaacttatgaaaacagcctatgacaggtccataaacttttttcagcttattttcataaactct 233  Q
    |||| |||||||||||| | ||||||| | ||||||  | |||||||||||||||||||| ||||    
T  46082128 gagagcttatgaaaacaacttatgacatgaccataagttgttttcagcttattttcataagctct 46082064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 213 - 257
Target Start/End: Original strand, 48917368 - 48917412
Alignment:
Q  213 cagcttattttcataaactcttcaagatggcttataaaaacaact 257  Q
    |||||||||||||||| |||| |||||| |||||| |||||||||    
T  48917368 cagcttattttcataagctctccaagatagcttatgaaaacaact 48917412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 169 - 284
Target Start/End: Original strand, 20368158 - 20368274
Alignment:
Q  169 gagaacttatgaaaacagcctatgacaggtccataaacttttttcagcttattttcataaactcttcaagatggcttataaaaacaac-tacaacttata 267  Q
    ||||||||||||||||| | ||||||| || ||||| ||  ||||| |||||||||||||  ||| |||||  |||||| |||||||| || |||| |||    
T  20368158 gagaacttatgaaaacaacttatgacatgttcataagctagtttcaacttattttcataagttctccaagaaagcttatgaaaacaacttataactcata 20368257  T
Q  268 caaaaacaatttaactt 284  Q
    ||||||||||| |||||    
T  20368258 caaaaacaattcaactt 20368274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 170 - 254
Target Start/End: Complemental strand, 31624181 - 31624097
Alignment:
Q  170 agaacttatgaaaacagcctatgacaggtccataaacttttttcagcttattttcataaactcttcaagatggcttataaaaaca 254  Q
    |||||||||||||||||| ||||||| || ||||| || |||||| |||||||||||||  ||| |||||| || ||| ||||||    
T  31624181 agaacttatgaaaacagcttatgacatgttcataagctgttttcaacttattttcataatttctccaagatagcctatgaaaaca 31624097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 200 - 279
Target Start/End: Original strand, 34430470 - 34430550
Alignment:
Q  200 cataaacttttttcagcttattttcataaactcttcaagatggcttataaaaacaac-tacaacttatacaaaaacaattt 279  Q
    ||||| |||||||||||||||||||||||  ||| |||||| |||||| |||||| | || ||| ||||||||||||||||    
T  34430470 cataagcttttttcagcttattttcataacttctccaagatagcttatgaaaacaccttataacatatacaaaaacaattt 34430550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 178 - 236
Target Start/End: Original strand, 11600861 - 11600919
Alignment:
Q  178 tgaaaacagcctatgacaggtccataaacttttttcagcttattttcataaactcttca 236  Q
    |||||||||| ||||||| ||||| ||||| |||||||||||||||||||  |||||||    
T  11600861 tgaaaacagcttatgacatgtccaaaaactattttcagcttattttcataggctcttca 11600919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 181 - 247
Target Start/End: Complemental strand, 34939824 - 34939758
Alignment:
Q  181 aaacagcctatgacaggtccataaacttttttcagcttattttcataaactcttcaagatggcttat 247  Q
    ||||||| ||||||| ||||||||| | |||||||||||||| |||||||||| || ||| ||||||    
T  34939824 aaacagcttatgacatgtccataaattgttttcagcttatttccataaactctccaggatagcttat 34939758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 197 - 254
Target Start/End: Complemental strand, 27894110 - 27894053
Alignment:
Q  197 gtccataaacttttttcagcttattttcataaactcttcaagatggcttataaaaaca 254  Q
    ||||||||||| |||||||||||||||||||| || ||||||||  ||||| ||||||    
T  27894110 gtccataaactgttttcagcttattttcataagcttttcaagatatcttatgaaaaca 27894053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 209 - 257
Target Start/End: Original strand, 5564146 - 5564194
Alignment:
Q  209 ttttcagcttattttcataaactcttcaagatggcttataaaaacaact 257  Q
    |||||||||||||| ||||||||||||||||  |||||| |||||||||    
T  5564146 ttttcagcttatttgcataaactcttcaagacagcttatgaaaacaact 5564194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 228
Target Start/End: Original strand, 32171360 - 32171420
Alignment:
Q  168 agagaacttatgaaaacagcctatgacaggtccataaacttttttcagcttattttcataa 228  Q
    ||||| |||||||||||||| ||||||| ||||| || || |||||||||||||| |||||    
T  32171360 agagagcttatgaaaacagcttatgacaagtccagaagctattttcagcttatttccataa 32171420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 171 - 222
Target Start/End: Complemental strand, 283185 - 283134
Alignment:
Q  171 gaacttatgaaaacagcctatgacaggtccataaacttttttcagcttattt 222  Q
    |||| ||| |||||||| ||||||| ||||||||||| ||||||||||||||    
T  283185 gaacgtataaaaacagcttatgacatgtccataaactattttcagcttattt 283134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 200 - 278
Target Start/End: Complemental strand, 6536676 - 6536597
Alignment:
Q  200 cataaacttttttcagcttattttcataaactcttcaagatggcttataaaaacaac-tacaacttatacaaaaacaatt 278  Q
    ||||| ||||||||| |||||||||||||| ||| ||| || |||| |||||||||| || | | |||||||||||||||    
T  6536676 cataagcttttttcaacttattttcataaattctccaatatagcttctaaaaacaacttatagcatatacaaaaacaatt 6536597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 168 - 251
Target Start/End: Original strand, 34538195 - 34538278
Alignment:
Q  168 agagaacttatgaaaacagcctatgacaggtccataaacttttttcagcttattttcataaactcttcaagatggcttataaaa 251  Q
    ||||| ||||| |||||||| || |||| ||||||||||| ||||||||||||||  | |||||||  | ||| ||||||||||    
T  34538195 agagatcttataaaaacagcttacgacatgtccataaactattttcagcttatttatacaaactctctaggatagcttataaaa 34538278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 174 - 233
Target Start/End: Original strand, 34544127 - 34544186
Alignment:
Q  174 cttatgaaaacagcctatgacaggtccataaacttttttcagcttattttcataaactct 233  Q
    |||||||||||||  ||||||| ||||||||||| |||||| |||||||  |||||||||    
T  34544127 cttatgaaaacagtttatgacatgtccataaactattttcatcttatttctataaactct 34544186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 170 - 228
Target Start/End: Complemental strand, 696693 - 696635
Alignment:
Q  170 agaacttatgaaaacagcctatgacaggtccataaacttttttcagcttattttcataa 228  Q
    ||||||||| |||||||| ||||||| || ||||| || ||||||||||||| ||||||    
T  696693 agaacttatcaaaacagcttatgacatgttcataagctgttttcagcttattctcataa 696635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 168 - 234
Target Start/End: Original strand, 725632 - 725698
Alignment:
Q  168 agagaacttatgaaaacagcctatgacaggtccataaacttttttcagcttattttcataaactctt 234  Q
    ||||| |||||||||||| | ||||||| |||| || ||| |||||||||||||| ||||| |||||    
T  725632 agagagcttatgaaaacaacttatgacatgtccgtagactattttcagcttatttccataagctctt 725698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 285
Target Start/End: Complemental strand, 13907907 - 13907822
Alignment:
Q  201 ataaacttttttcagcttattttcataaactcttcaagatggcttataaaaacaac-tacaacttatacaaaaacaatttaacttt 285  Q
    ||||||| ||||| | |||||||||||| ||||||||||| |||| | |||||||| ||||  || |||||||||| ||| |||||    
T  13907907 ataaactgttttccgtttattttcataagctcttcaagatagcttttgaaaacaacttacagattttacaaaaacagtttgacttt 13907822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 285
Target Start/End: Complemental strand, 26694930 - 26694853
Alignment:
Q  209 ttttcagcttattttcataaactcttcaagatggcttataaaaacaa-ctacaacttatacaaaaacaatttaacttt 285  Q
    ||||||||||||||||||||  |||||||||| | |||| |||||||  || ||| |||||  |||||||||||||||    
T  26694930 ttttcagcttattttcataagttcttcaagatagtttatgaaaacaatttataacatatacggaaacaatttaacttt 26694853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 172 - 286
Target Start/End: Complemental strand, 2735159 - 2735043
Alignment:
Q  172 aacttatgaaaacagcctatgacaggtc-cataaacttttttcagcttattttcataaactcttcaagatggcttataaaaacaac-tacaacttataca 269  Q
    ||||||||||||| || |||||||  |  ||||| || ||||| ||||||||||||||  | |||||||| |||||| |||||| | || |  |||||||    
T  2735159 aacttatgaaaacggcttatgacatttttcataagctgttttcggcttattttcataagttgttcaagattgcttatgaaaacagcttatagattataca 2735060  T
Q  270 aaaacaatttaacttta 286  Q
    |||| ||||||||||||    
T  2735059 aaaataatttaacttta 2735043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 211 - 286
Target Start/End: Original strand, 6909892 - 6909968
Alignment:
Q  211 ttcagcttattttcataaactcttcaagatggcttataaaaacaact-acaacttatacaaaaacaatttaacttta 286  Q
    ||||||||| ||||||||| ||| ||||||   |||| ||||||||| | | | |||||||||||||||||||||||    
T  6909892 ttcagcttaatttcataaattctccaagatatgttatgaaaacaacttatagcatatacaaaaacaatttaacttta 6909968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 209 - 257
Target Start/End: Complemental strand, 13907637 - 13907589
Alignment:
Q  209 ttttcagcttattttcataaactcttcaagatggcttataaaaacaact 257  Q
    ||||||| ||||||||||||  ||| ||||||||||||| |||||||||    
T  13907637 ttttcagtttattttcataatttctccaagatggcttatgaaaacaact 13907589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 168 - 248
Target Start/End: Original strand, 32577963 - 32578043
Alignment:
Q  168 agagaacttatgaaaacagcctatgacaggtccataaacttttttcagcttattttcataaactcttcaagatggcttata 248  Q
    ||||| |||||||||||| | ||||||| |||| | | || |||||||||||||| ||||  ||||||| ||| |||||||    
T  32577963 agagagcttatgaaaacaacttatgacatgtccttgagctgttttcagcttatttccatatgctcttcaggatagcttata 32578043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 169 - 229
Target Start/End: Original strand, 34404703 - 34404763
Alignment:
Q  169 gagaacttatgaaaacagcctatgacaggtccataaacttttttcagcttattttcataaa 229  Q
    ||||||||||||||| | | ||||||| || ||||| || |||||||| ||||||||||||    
T  34404703 gagaacttatgaaaatatcttatgacatgtacataagctgttttcagcatattttcataaa 34404763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000009; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 169 - 233
Target Start/End: Complemental strand, 13459737 - 13459673
Alignment:
Q  169 gagaacttatgaaaacagcctatgacaggtccataaacttttttcagcttattttcataaactct 233  Q
    ||||||||||||||||||| |||||||  | |||||||| |||||||| ||||||||||| ||||    
T  13459737 gagaacttatgaaaacagcttatgacattttcataaactgttttcagcctattttcataagctct 13459673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 175 - 247
Target Start/End: Original strand, 42370345 - 42370417
Alignment:
Q  175 ttatgaaaacagcctatgacaggtccataaacttttttcagcttattttcataaactcttcaagatggcttat 247  Q
    ||||||||| ||| ||||||| ||| | ||||| |||||||||||||| ||||||||||||| ||| ||||||    
T  42370345 ttatgaaaatagcgtatgacatgtctacaaactgttttcagcttatttccataaactcttcatgatagcttat 42370417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 169 - 286
Target Start/End: Complemental strand, 38648444 - 38648325
Alignment:
Q  169 gagaacttatgaaaacagcctatgacaggtc-cataaacttttttcagcttattttcataaactcttcaagatggcttataaaaacaact-acaacttat 266  Q
    |||| ||||||||||||||  ||||||| || ||||| ||||||| ||| || ||||||||  ||| |||||| |||||| ||||||||| | ||| |||    
T  38648444 gagaccttatgaaaacagctcatgacagttctcataagcttttttaagcgtaatttcataagttctacaagatagcttatgaaaacaactcataacatat 38648345  T
Q  267 acaaaaacaatttaacttta 286  Q
    |||||||||| |||| ||||    
T  38648344 acaaaaacaagttaatttta 38648325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 189 - 254
Target Start/End: Complemental strand, 20672822 - 20672757
Alignment:
Q  189 tatgacaggtccataaacttttttcagcttattttcataaactcttcaagatggcttataaaaaca 254  Q
    ||||||| || ||||| || |||||||||||||||||||| |||| || ||| |||||||||||||    
T  20672822 tatgacatgttcataagctgttttcagcttattttcataagctctccaggatagcttataaaaaca 20672757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 200 - 284
Target Start/End: Complemental strand, 27028892 - 27028807
Alignment:
Q  200 cataaacttttttcagcttattttcataaactcttcaagatggcttataaaaacaac-tacaacttatacaaaaacaatttaactt 284  Q
    ||||| || |||||||||||||||||||| |||| |||||| |||||| |||||| | || | | |||||| ||||||||||||||    
T  27028892 cataagctattttcagcttattttcataagctctccaagatagcttatgaaaacagcttatagcatatacacaaacaatttaactt 27028807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 168 - 236
Target Start/End: Original strand, 29168642 - 29168711
Alignment:
Q  168 agagaacttatgaaaacagcctatgacaggtccataaact-tttttcagcttattttcataaactcttca 236  Q
    ||||| |||||||||||||| ||||||| |||||||| || |||| ||||| | ||||||||||||||||    
T  29168642 agagagcttatgaaaacagcttatgacatgtccataagctattttccagctaactttcataaactcttca 29168711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 209 - 257
Target Start/End: Complemental strand, 4762561 - 4762513
Alignment:
Q  209 ttttcagcttattttcataaactcttcaagatggcttataaaaacaact 257  Q
    |||||||||||||| ||||| ||||||||||| |||||| |||||||||    
T  4762561 ttttcagcttatttacataagctcttcaagatagcttatgaaaacaact 4762513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 169 - 233
Target Start/End: Original strand, 8066748 - 8066812
Alignment:
Q  169 gagaacttatgaaaacagcctatgacaggtccataaacttttttcagcttattttcataaactct 233  Q
    |||| ||||||||||  ||  |||||| ||||||||  |||||||||||||||||||||||||||    
T  8066748 gagagcttatgaaaatcgctgatgacatgtccataagtttttttcagcttattttcataaactct 8066812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 175 - 286
Target Start/End: Complemental strand, 11415240 - 11415128
Alignment:
Q  175 ttatgaaaacagcctatgacaggtccataaacttttttcagcttattttcataaactcttcaagatggcttataaaaacaac-tacaacttatacaaaaa 273  Q
    ||||| ||||||| ||| ||| |||||||| || || |||||||||||||| |||||||  | ||| |||||| |||||| | || |||||||| |||||    
T  11415240 ttatggaaacagcttataacatgtccataagctattctcagcttattttcacaaactctctaggatagcttatgaaaacagcgtataacttatataaaaa 11415141  T
Q  274 caatttaacttta 286  Q
     ||||| ||||||    
T  11415140 taatttgacttta 11415128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 166 - 254
Target Start/End: Original strand, 11569432 - 11569520
Alignment:
Q  166 taagagaacttatgaaaacagcctatgacaggtccataaacttttttcagcttattttcataaactcttcaagatggcttataaaaaca 254  Q
    ||||||| |||||| ||||||| ||||||| || |||||  | ||||||||||||||||| || |||| || ||| |||||| ||||||    
T  11569432 taagagagcttatggaaacagcttatgacatgtacataagttgttttcagcttattttcaaaatctctccatgatagcttatgaaaaca 11569520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 197 - 248
Target Start/End: Original strand, 39866740 - 39866791
Alignment:
Q  197 gtccataaacttttttcagcttattttcataaactcttcaagatggcttata 248  Q
    |||||||| || ||||||| |||||||||||| ||||||||||| |||||||    
T  39866740 gtccataagctgttttcagtttattttcataagctcttcaagatagcttata 39866791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 210 - 252
Target Start/End: Complemental strand, 11494197 - 11494155
Alignment:
Q  210 tttcagcttattttcataaactcttcaagatggcttataaaaa 252  Q
    ||||||||||||||||||| ||||||||||| |||||| ||||    
T  11494197 tttcagcttattttcataagctcttcaagatagcttatgaaaa 11494155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 168 - 254
Target Start/End: Original strand, 29169075 - 29169160
Alignment:
Q  168 agagaacttatgaaaacagcctatgacaggtccataaacttttttcagcttattttcataaactcttcaagatggcttataaaaaca 254  Q
    ||||||||||| |||||||| ||| |||  ||||||| || ||||| |||||||| ||||||||||||| |||  |||| |||||||    
T  29169075 agagaacttat-aaaacagcttataacatatccataagctattttcggcttatttccataaactcttcaggataacttacaaaaaca 29169160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 183 - 257
Target Start/End: Complemental strand, 34290947 - 34290873
Alignment:
Q  183 acagcctatgacaggtccataaacttttttcagcttattttcataaactcttcaagatggcttataaaaacaact 257  Q
    ||||| ||| ||| |||||||| | ||||||||||||||||||| |||||| || ||| | ||| ||||||||||    
T  34290947 acagcttattacatgtccataagcctttttcagcttattttcattaactctccaggatagattagaaaaacaact 34290873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 251
Target Start/End: Complemental strand, 3254316 - 3254235
Alignment:
Q  170 agaacttatgaaaacagcctatgacaggtccataaacttttttcagcttattttcataaactcttcaagatggcttataaaa 251  Q
    |||||||| ||||||||| ||||||| || ||||| || ||||||||||||||  ||| |||||  | ||| ||||||||||    
T  3254316 agaacttaagaaaacagcttatgacatgttcataagctgttttcagcttatttctatacactctataggatagcttataaaa 3254235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 169 - 257
Target Start/End: Original strand, 26473730 - 26473818
Alignment:
Q  169 gagaacttatgaaaacagcctatgacaggtccataaacttttttcagcttattttcataaactcttcaagatggcttataaaaacaact 257  Q
    |||| |||||||||||||| ||||||| ||| |||| ||  ||| | ||||||||||||| ||||  | ||| |||||| |||||||||    
T  26473730 gagagcttatgaaaacagcttatgacatgtctataagctagttttaacttattttcataagctctctaggatagcttatgaaaacaact 26473818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 200 - 240
Target Start/End: Complemental strand, 31168075 - 31168035
Alignment:
Q  200 cataaacttttttcagcttattttcataaactcttcaagat 240  Q
    |||||||||||||||||||| |||||||| |||||| ||||    
T  31168075 cataaacttttttcagcttactttcataagctcttctagat 31168035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 169 - 233
Target Start/End: Original strand, 42215284 - 42215348
Alignment:
Q  169 gagaacttatgaaaacagcctatgacaggtccataaacttttttcagcttattttcataaactct 233  Q
    ||||||| ||||||||||| ||||||  || ||||| || |||||||||||||| ||||| ||||    
T  42215284 gagaactaatgaaaacagcttatgacttgttcataagctgttttcagcttatttacataagctct 42215348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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