View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17554_low_1 (Length: 820)

Name: NF17554_low_1
Description: NF17554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17554_low_1
NF17554_low_1
[»] chr8 (2 HSPs)
chr8 (20-804)||(13046905-13047689)
chr8 (62-127)||(32688709-32688774)
[»] chr6 (7 HSPs)
chr6 (63-195)||(1572989-1573121)
chr6 (680-804)||(1573402-1573526)
chr6 (63-143)||(1574200-1574280)
chr6 (63-143)||(29657203-29657283)
chr6 (84-143)||(11381399-11381458)
chr6 (313-443)||(6429262-6429389)
chr6 (313-443)||(12839864-12839994)
[»] chr5 (6 HSPs)
chr5 (680-801)||(41422965-41423086)
chr5 (64-145)||(20013874-20013955)
chr5 (63-143)||(41423365-41423445)
chr5 (65-144)||(17900155-17900233)
chr5 (84-143)||(41422225-41422284)
chr5 (84-143)||(14672316-14672375)
[»] chr4 (10 HSPs)
chr4 (680-804)||(30100922-30101046)
chr4 (84-195)||(30101326-30101437)
chr4 (63-143)||(13417600-13417680)
chr4 (192-448)||(29404818-29405066)
chr4 (84-145)||(52038913-52038974)
chr4 (84-143)||(48367387-48367446)
chr4 (84-143)||(56331690-56331749)
chr4 (63-101)||(56331772-56331810)
chr4 (63-98)||(48367452-48367487)
chr4 (34-76)||(56331842-56331884)
[»] chr3 (8 HSPs)
chr3 (680-804)||(30575226-30575350)
chr3 (63-195)||(30574817-30574945)
chr3 (84-195)||(6529260-6529372)
chr3 (74-131)||(14414622-14414679)
chr3 (84-143)||(30576020-30576079)
chr3 (63-99)||(6529220-6529256)
chr3 (63-99)||(6530308-6530344)
chr3 (63-98)||(30575979-30576014)
[»] chr7 (5 HSPs)
chr7 (84-195)||(15743255-15743366)
chr7 (680-804)||(15742850-15742974)
chr7 (63-143)||(15742096-15742176)
chr7 (63-143)||(23118309-23118389)
chr7 (63-98)||(29418505-29418540)
[»] chr1 (12 HSPs)
chr1 (84-195)||(28876514-28876625)
chr1 (680-804)||(28876109-28876233)
chr1 (680-804)||(51837082-51837206)
chr1 (63-143)||(37810817-37810897)
chr1 (84-181)||(51837532-51837629)
chr1 (65-143)||(19620688-19620766)
chr1 (84-143)||(28875335-28875394)
chr1 (84-143)||(44031802-44031861)
chr1 (153-195)||(51837487-51837529)
chr1 (63-98)||(28875400-28875435)
chr1 (63-98)||(51836373-51836408)
chr1 (63-101)||(44031741-44031779)
[»] chr2 (5 HSPs)
chr2 (63-143)||(4518762-4518842)
chr2 (63-143)||(44112623-44112703)
chr2 (65-124)||(8489190-8489249)
chr2 (92-143)||(44113183-44113234)
chr2 (34-76)||(44112735-44112777)


Alignment Details
Target: chr8 (Bit Score: 663; Significance: 0; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 663; E-Value: 0
Query Start/End: Original strand, 20 - 804
Target Start/End: Complemental strand, 13047689 - 13046905
Alignment:
Q  20 aatgtaactactcttaatcaacacaaataactgcataaactgactaactgctcctaaataactgtatattaaaataactaaccgcatcagcaattaccct 119  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||    
T  13047689 aatgtaactactcctaatcaacacaaataactgcataaactgactaactgctcctaaataactgtatactaaaataactaactgcatcagcaattaccct 13047590  T
Q  120 atcaataccacctgacacctaacattaccgactgctagaaaaacagtcttgtcctcaaggctgagataaagaaactgattcttcggtactagtttattct 219  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13047589 atcaataccacccgacacctaacattaccgactgctagaaaaacagtcttgtcctcaaggctgagataaagaaactgattcttcggtactagtttattct 13047490  T
Q  220 tccaagcaatgacatgcataagtggccttttgtatcttttccagaactgtaatcagaaaatcaatagtttctataataaccgaaaaggcactaatcagta 319  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  13047489 tccaagcaatgacatgcataagtggccttttgtatcttttccagaactgtaatcagaaaatcaatagtttctataataaccgaaaaggcactaatcagga 13047390  T
Q  320 caacgccaaacctccatagaatttgatgccaaaattgatgaagtgcttttgattgagaagttctagtagttgccattgtcgatgcacaaaaaatctggaa 419  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||    
T  13047389 caacgccaaacctccatagaatttgatgccgaaattgatgaagtgcttttgattgagaagttccagtagttgccattgtcaatgcacaaaaaatctggaa 13047290  T
Q  420 aacattttagagtccaacttgtcgtgcatgtcttttgtatggtggaagattttttgtgatgaatctgacttttttggcatcgtgtnnnnnnntttgttgt 519  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||        |||||||    
T  13047289 aacattttagagtccaacttgtcatgcatgtcttttgtatggtggaagattttttgtgatgaatctgacttttttggcatcatgtaaaaaaaattgttgt 13047190  T
Q  520 tccggcagcagttgaggttcgatcctgcaaacttgatcttcttttctcgctgccttgtgactggttctgctcnnnnnnnccaacacttatcgcttcatta 619  Q
    |||||| ||||||||||||||||||||| |||||| ||| |||||||| ||||||||||||||||||| |||       |||||||||||||||||||||    
T  13047189 tccggcggcagttgaggttcgatcctgccaacttggtctgcttttctcactgccttgtgactggttcttctctttttttccaacacttatcgcttcatta 13047090  T
Q  620 actacacttccccgacccccactcttttcttcgcaatttttcttcgttacctctttgttcttctccatttctgcatcaatgatcttttccgacgaaggtg 719  Q
    |||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13047089 actacacttccccgacccccactcttttcttcgtgatttttcttcgttacctctttgttcttctccatttctgcatcaatgatcttttccgacgaaggtg 13046990  T
Q  720 aaatttcgttgatgtaccttccttctccatcgctgatggtcttctttaagaccggttcattgtgtttttctgtcatcttccacag 804  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13046989 aaatttcgttgatgtaccttccttctccatcgttgatggtcttctttaagaccggttcattgtgtttttctgtcatcttccacag 13046905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 62 - 127
Target Start/End: Original strand, 32688709 - 32688774
Alignment:
Q  62 actaactgctcctaaataactgtatattaaaataactaaccgcatcagcaattaccctatcaatac 127  Q
    ||||||||||||||||||||||||||||||||||||| || ||||||||| |||||||||||||||    
T  32688709 actaactgctcctaaataactgtatattaaaataactgactgcatcagcagttaccctatcaatac 32688774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 85; Significance: 4e-40; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 63 - 195
Target Start/End: Original strand, 1572989 - 1573121
Alignment:
Q  63 ctaactgctcctaaataactgtatattaaaataactaaccgcatcagcaattaccctatcaataccacctgacacctaacattaccgactgctagaaaaa 162  Q
    |||||||||||||||||||| ||||||||||||||| || ||||||||| | |||||||||||| |||| || |||||||||||||| | ||||||||||    
T  1572989 ctaactgctcctaaataactatatattaaaataactgactgcatcagcagtcaccctatcaatatcaccggatacctaacattaccggccgctagaaaaa 1573088  T
Q  163 cagtcttgtcctcaaggctgagataaagaaact 195  Q
    ||| |||||||||||||||||| ||||||||||    
T  1573089 cagccttgtcctcaaggctgagttaaagaaact 1573121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 680 - 804
Target Start/End: Original strand, 1573402 - 1573526
Alignment:
Q  680 ttctccatttctgcatcaatgatcttttccgacgaaggtgaaatttcgttgatgtaccttccttctccatcgctgatggtcttctttaagaccggttcat 779  Q
    |||||||||||||||||||  | ||||||||| |||||||||||||| |||| ||||||||||||||||||| ||||| |||||| ||| || |||||||    
T  1573402 ttctccatttctgcatcaacaaccttttccgaagaaggtgaaatttcattgacgtaccttccttctccatcgttgatgatcttctctaatactggttcat 1573501  T
Q  780 tgtgtttttctgtcatcttccacag 804  Q
     ||||||||||| ||||||||||||    
T  1573502 cgtgtttttctgccatcttccacag 1573526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 63 - 143
Target Start/End: Original strand, 1574200 - 1574280
Alignment:
Q  63 ctaactgctcctaaataactgtatattaaaataactaaccgcatcagcaattaccctatcaataccacctgacacctaaca 143  Q
    |||||||||||||||||||| ||||||||||||||| || ||||||||| | ||||||||||||||||| || ||||||||    
T  1574200 ctaactgctcctaaataactatatattaaaataactgactgcatcagcagtcaccctatcaataccaccggatacctaaca 1574280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 63 - 143
Target Start/End: Complemental strand, 29657283 - 29657203
Alignment:
Q  63 ctaactgctcctaaataactgtatattaaaataactaaccgcatcagcaattaccctatcaataccacctgacacctaaca 143  Q
    |||||||||||||||||||| ||||||||||||||| || |||| |||| ||||||||||||||||||| || ||||||||    
T  29657283 ctaactgctcctaaataactatatattaaaataactgactgcattagcagttaccctatcaataccaccggatacctaaca 29657203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 84 - 143
Target Start/End: Complemental strand, 11381458 - 11381399
Alignment:
Q  84 tatattaaaataactaaccgcatcagcaattaccctatcaataccacctgacacctaaca 143  Q
    ||||||||||||||| || ||||||||| ||||||||||||||||||| || ||||||||    
T  11381458 tatattaaaataactgactgcatcagcagttaccctatcaataccaccggatacctaaca 11381399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 313 - 443
Target Start/End: Original strand, 6429262 - 6429389
Alignment:
Q  313 atcagtacaacgccaaacctccatagaatttgatgccaaaattgatgaagtgcttttgattgagaagttctagtagttgccattgtcgatgcacaaaaaa 412  Q
    ||||| |||| ||||||  |||| | |||||| |||| |||||||||||||  | ||||||| ||| ||| ||||||| ||||| |  | ||||||||||    
T  6429262 atcaggacaatgccaaaggtccacaaaatttgttgccgaaattgatgaagttatattgattgggaaattccagtagtt-ccattattaaagcacaaaaaa 6429360  T
Q  413 tctggaaaacattttagagtccaacttgtcg 443  Q
    |||| |||||||||  |||||||||||||||    
T  6429361 tctgaaaaacattt--gagtccaacttgtcg 6429389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 313 - 443
Target Start/End: Original strand, 12839864 - 12839994
Alignment:
Q  313 atcagtacaacgccaaacctccatagaatttgatgccaaaattgatgaagtgcttttgattgagaagttctagtagttgccattgtcgatgcacaaaaaa 412  Q
    ||||| |||| |||||| ||||| | |||||| |||| ||||| |||||||  | ||||||| ||| ||| ||||||| ||||| || | ||| ||||||    
T  12839864 atcaggacaatgccaaagctccacaaaatttgttgccgaaatttatgaagttatattgattgggaaattccagtagtt-ccattatcaaagcataaaaaa 12839962  T
Q  413 -tctggaaaacattttagagtccaacttgtcg 443  Q
     |||| ||||||||| ||||||||||||||||    
T  12839963 atctgaaaaacatttgagagtccaacttgtcg 12839994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 78; Significance: 7e-36; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 78; E-Value: 7e-36
Query Start/End: Original strand, 680 - 801
Target Start/End: Complemental strand, 41423086 - 41422965
Alignment:
Q  680 ttctccatttctgcatcaatgatcttttccgacgaaggtgaaatttcgttgatgtaccttccttctccatcgctgatggtcttctttaagaccggttcat 779  Q
    |||||||||||||||||||  | |||||||||||||||||||||||| |||| ||||||||||||||||||| ||||| |||||| ||| || |||||||    
T  41423086 ttctccatttctgcatcaacaaccttttccgacgaaggtgaaatttcattgacgtaccttccttctccatcgttgatgatcttctctaatactggttcat 41422987  T
Q  780 tgtgtttttctgtcatcttcca 801  Q
     |||||||||||||||||||||    
T  41422986 cgtgtttttctgtcatcttcca 41422965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 64 - 145
Target Start/End: Original strand, 20013874 - 20013955
Alignment:
Q  64 taactgctcctaaataactgtatattaaaataactaaccgcatcagcaattaccctatcaataccacctgacacctaacatt 145  Q
    ||||||| ||||||||||||||||||||||||||| |  ||||||||||||||||||||||||||||| || ||||||||||    
T  20013874 taactgcccctaaataactgtatattaaaataactgattgcatcagcaattaccctatcaataccacccgatacctaacatt 20013955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 63 - 143
Target Start/End: Original strand, 41423365 - 41423445
Alignment:
Q  63 ctaactgctcctaaataactgtatattaaaataactaaccgcatcagcaattaccctatcaataccacctgacacctaaca 143  Q
    |||||||||||||||||||| ||||||||||||||| || || |||||| ||||||||||||||||||| || ||||||||    
T  41423365 ctaactgctcctaaataactatatattaaaataactgactgcgtcagcagttaccctatcaataccaccagatacctaaca 41423445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 65 - 144
Target Start/End: Original strand, 17900155 - 17900233
Alignment:
Q  65 aactgctcctaaataactgtatattaaaataactaaccgcatcagcaattaccctatcaataccacctgacacctaacat 144  Q
    |||||||||||||||||  ||||||||||||||| || ||||||||| ||||||| ||||||||||| || |||||||||    
T  17900155 aactgctcctaaataaccatatattaaaataactgactgcatcagcagttaccct-tcaataccacccgatacctaacat 17900233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 84 - 143
Target Start/End: Complemental strand, 41422284 - 41422225
Alignment:
Q  84 tatattaaaataactaaccgcatcagcaattaccctatcaataccacctgacacctaaca 143  Q
    ||||||||||||||| || ||||||||| ||||||||||||||||||| || ||||||||    
T  41422284 tatattaaaataacttactgcatcagcagttaccctatcaataccaccagatacctaaca 41422225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 84 - 143
Target Start/End: Complemental strand, 14672375 - 14672316
Alignment:
Q  84 tatattaaaataactaaccgcatcagcaattaccctatcaataccacctgacacctaaca 143  Q
    ||||||||||||||| || ||||||||| | ||||||||||||||||| || ||||||||    
T  14672375 tatattaaaataactgactgcatcagcagtcaccctatcaataccaccggatacctaaca 14672316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 77; Significance: 3e-35; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 680 - 804
Target Start/End: Complemental strand, 30101046 - 30100922
Alignment:
Q  680 ttctccatttctgcatcaatgatcttttccgacgaaggtgaaatttcgttgatgtaccttccttctccatcgctgatggtcttctttaagaccggttcat 779  Q
    |||||||||||||||||||  | |||||||||||||||||||||||| |||| ||||||||||||||||||| ||||| |||||| ||| || |||||||    
T  30101046 ttctccatttctgcatcaacaaccttttccgacgaaggtgaaatttcattgacgtaccttccttctccatcgttgatgatcttctctaatactggttcat 30100947  T
Q  780 tgtgtttttctgtcatcttccacag 804  Q
     ||||||||||| ||||||||||||    
T  30100946 cgtgtttttctgccatcttccacag 30100922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 84 - 195
Target Start/End: Complemental strand, 30101437 - 30101326
Alignment:
Q  84 tatattaaaataactaaccgcatcagcaattaccctatcaataccacctgacacctaacattaccgactgctagaaaaacagtcttgtcctcaaggctga 183  Q
    ||||||||||||||| || ||||||||| | ||||||||||||||||| || |||||||||||||||| ||||||||||||| |||||||||||||||||    
T  30101437 tatattaaaataactgactgcatcagcagtcaccctatcaataccaccggatacctaacattaccgaccgctagaaaaacagccttgtcctcaaggctga 30101338  T
Q  184 gataaagaaact 195  Q
    | ||||||||||    
T  30101337 gttaaagaaact 30101326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 63 - 143
Target Start/End: Complemental strand, 13417680 - 13417600
Alignment:
Q  63 ctaactgctcctaaataactgtatattaaaataactaaccgcatcagcaattaccctatcaataccacctgacacctaaca 143  Q
    |||||||||| ||||||||||||||||||||||||| ||  |||||||| ||||||||||||||||||| || ||||||||    
T  13417680 ctaactgctcttaaataactgtatattaaaataacttactacatcagcagttaccctatcaataccacccgatacctaaca 13417600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 192 - 448
Target Start/End: Original strand, 29404818 - 29405066
Alignment:
Q  192 aactgattcttcggtactagtttattcttccaagcaatgacatgcataagtggccttttgtatcttttccagaactgtaatcagaaaatcaatagtttct 291  Q
    ||||||||||| |||||||||||||||||||||||  ||||||  |  ||||| || ||   ||||||| |||  ||||||||  |||||||||||| ||    
T  29404818 aactgattcttgggtactagtttattcttccaagctttgacatagaccagtggtctgtt---tcttttctagat-tgtaatcaacaaatcaatagttgct 29404913  T
Q  292 ataataaccgaaaaggcacta--atcagtacaacgccaaacctccatagaatttgatgccaaaattgatgaagtgcttttgattgagaagttctagtagt 389  Q
    ||||||||| |    || |||  ||||| |||| |||||| ||||| |||||| | | || ||||| ||||||| || ||||||| |||   | ||||||    
T  29404914 ataataaccaa----gctctattatcaggacaatgccaaagctccacagaatt-gttaccgaaattaatgaagttctattgattgggaaagcc-agtagt 29405007  T
Q  390 tgccattgtcgatgcacaaaaaatctggaaaacattttagagtccaacttgtcgtgcat 448  Q
    ||||||| || | |||| | ||||||| ||||||||| ||||||||||||| |||||||    
T  29405008 tgccattatcaaagcacgagaaatctgaaaaacatttgagagtccaacttgccgtgcat 29405066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 84 - 145
Target Start/End: Original strand, 52038913 - 52038974
Alignment:
Q  84 tatattaaaataactaaccgcatcagcaattaccctatcaataccacctgacacctaacatt 145  Q
    |||||| |||||||| || ||||||||| ||||||||||||||||||| || ||||||||||    
T  52038913 tatatttaaataactgactgcatcagcagttaccctatcaataccaccggatacctaacatt 52038974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 84 - 143
Target Start/End: Complemental strand, 48367446 - 48367387
Alignment:
Q  84 tatattaaaataactaaccgcatcagcaattaccctatcaataccacctgacacctaaca 143  Q
    ||||||||||||||| || ||||||||| | ||||||||||||||||| || ||||||||    
T  48367446 tatattaaaataactgactgcatcagcagtcaccctatcaataccaccggatacctaaca 48367387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 84 - 143
Target Start/End: Complemental strand, 56331749 - 56331690
Alignment:
Q  84 tatattaaaataactaaccgcatcagcaattaccctatcaataccacctgacacctaaca 143  Q
    ||||||||||||||  || ||||||||| ||||||||||||||||||| || ||||||||    
T  56331749 tatattaaaataaccgactgcatcagcagttaccctatcaataccaccagatacctaaca 56331690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 63 - 101
Target Start/End: Complemental strand, 56331810 - 56331772
Alignment:
Q  63 ctaactgctcctaaataactgtatattaaaataactaac 101  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  56331810 ctaactgctcctaaataactatatattaaaataactaac 56331772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 98
Target Start/End: Complemental strand, 48367487 - 48367452
Alignment:
Q  63 ctaactgctcctaaataactgtatattaaaataact 98  Q
    |||||||||||||||||||| |||||||||||||||    
T  48367487 ctaactgctcctaaataactatatattaaaataact 48367452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 34 - 76
Target Start/End: Complemental strand, 56331884 - 56331842
Alignment:
Q  34 taatcaacacaaataactgcataaactgactaactgctcctaa 76  Q
    ||||||| |||||| ||||||||||||| ||||||||||||||    
T  56331884 taatcaatacaaattactgcataaactgcctaactgctcctaa 56331842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 77; Significance: 3e-35; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 680 - 804
Target Start/End: Original strand, 30575226 - 30575350
Alignment:
Q  680 ttctccatttctgcatcaatgatcttttccgacgaaggtgaaatttcgttgatgtaccttccttctccatcgctgatggtcttctttaagaccggttcat 779  Q
    |||||||||| ||||||||  | |||||||||||||||||||||||| |||| ||||||||||||||||||| ||||| |||||| ||| || |||||||    
T  30575226 ttctccatttttgcatcaacaaccttttccgacgaaggtgaaatttcattgacgtaccttccttctccatcgttgatgatcttctctaatactggttcat 30575325  T
Q  780 tgtgtttttctgtcatcttccacag 804  Q
     ||||||||||||||||||||||||    
T  30575326 cgtgtttttctgtcatcttccacag 30575350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 63 - 195
Target Start/End: Original strand, 30574817 - 30574945
Alignment:
Q  63 ctaactgctcctaaataactgtatattaaaataactaaccgcatcagcaattaccctatcaataccacctgacacctaacattaccgactgctagaaaaa 162  Q
    |||||||||||||||||||| ||||||||||||||| || || |||||| ||||||||||||||||||| || ||| |||||| ||    ||||||||||    
T  30574817 ctaactgctcctaaataactatatattaaaataactgactgcgtcagcagttaccctatcaataccaccagataccaaacatttcc----gctagaaaaa 30574912  T
Q  163 cagtcttgtcctcaaggctgagataaagaaact 195  Q
    ||| |||||||||||||||||| ||||||||||    
T  30574913 cagccttgtcctcaaggctgagttaaagaaact 30574945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 84 - 195
Target Start/End: Original strand, 6529260 - 6529372
Alignment:
Q  84 tatattaaaataactaaccgcatca-gcaattaccctatcaataccacctgacacctaacattaccgactgctagaaaaacagtcttgtcctcaaggctg 182  Q
    ||||||||||||||| |  |||||| ||| ||||||||||||||||||| || |||||||||||||||| ||||||||||||| ||||||||||||||||    
T  6529260 tatattaaaataactgattgcatcaagcagttaccctatcaataccaccggatacctaacattaccgaccgctagaaaaacagccttgtcctcaaggctg 6529359  T
Q  183 agataaagaaact 195  Q
    || ||||||||||    
T  6529360 agttaaagaaact 6529372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 74 - 131
Target Start/End: Original strand, 14414622 - 14414679
Alignment:
Q  74 taaataactgtatattaaaataactaaccgcatcagcaattaccctatcaataccacc 131  Q
    |||||||||||||||||||||||| ||| ||||||||| || ||||||| ||||||||    
T  14414622 taaataactgtatattaaaataaccaactgcatcagcagtttccctatctataccacc 14414679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 84 - 143
Target Start/End: Original strand, 30576020 - 30576079
Alignment:
Q  84 tatattaaaataactaaccgcatcagcaattaccctatcaataccacctgacacctaaca 143  Q
    ||||||||||||||| || || |||||| ||||||||||||||||||| || ||||||||    
T  30576020 tatattaaaataactgactgcgtcagcagttaccctatcaataccaccagatacctaaca 30576079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 63 - 99
Target Start/End: Original strand, 6529220 - 6529256
Alignment:
Q  63 ctaactgctcctaaataactgtatattaaaataacta 99  Q
    |||||||||||||||||||| ||||||||||||||||    
T  6529220 ctaactgctcctaaataactatatattaaaataacta 6529256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 63 - 99
Target Start/End: Original strand, 6530308 - 6530344
Alignment:
Q  63 ctaactgctcctaaataactgtatattaaaataacta 99  Q
    |||||||||||||||||||| ||||||||||||||||    
T  6530308 ctaactgctcctaaataactatatattaaaataacta 6530344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 98
Target Start/End: Original strand, 30575979 - 30576014
Alignment:
Q  63 ctaactgctcctaaataactgtatattaaaataact 98  Q
    |||||||||||||||||||| |||||||||||||||    
T  30575979 ctaactgctcctaaataactatatattaaaataact 30576014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 76; Significance: 1e-34; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 84 - 195
Target Start/End: Complemental strand, 15743366 - 15743255
Alignment:
Q  84 tatattaaaataactaaccgcatcagcaattaccctatcaataccacctgacacctaacattaccgactgctagaaaaacagtcttgtcctcaaggctga 183  Q
    ||||||||||||||| || ||||||||| | ||||||||||||||||| || |||||||||||||||| ||||||||||||| |||||||||||||||||    
T  15743366 tatattaaaataactgactgcatcagcagtcaccctatcaataccaccggatacctaacattaccgaccgctagaaaaacagccttgtcctcaaggctga 15743267  T
Q  184 gataaagaaact 195  Q
    | ||||||||||    
T  15743266 gttaaagaaact 15743255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 680 - 804
Target Start/End: Complemental strand, 15742974 - 15742850
Alignment:
Q  680 ttctccatttctgcatcaatgatcttttccgacgaaggtgaaatttcgttgatgtaccttccttctccatcgctgatggtcttctttaagaccggttcat 779  Q
    |||||||||||||||||||  | ||||||||| |||||||||||||| |||| ||||||||||||||||||| ||||| |||||| ||| || |||||||    
T  15742974 ttctccatttctgcatcaacaaccttttccgaagaaggtgaaatttcattgacgtaccttccttctccatcgttgatgatcttctctaatactggttcat 15742875  T
Q  780 tgtgtttttctgtcatcttccacag 804  Q
     ||||||||||| ||||||||||||    
T  15742874 cgtgtttttctgccatcttccacag 15742850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 63 - 143
Target Start/End: Complemental strand, 15742176 - 15742096
Alignment:
Q  63 ctaactgctcctaaataactgtatattaaaataactaaccgcatcagcaattaccctatcaataccacctgacacctaaca 143  Q
    |||||||||||||||||||| ||||||||||||||| || ||||||||| | ||||||||||||||||| || ||||||||    
T  15742176 ctaactgctcctaaataactatatattaaaataactgactgcatcagcagtcaccctatcaataccaccggatacctaaca 15742096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 63 - 143
Target Start/End: Complemental strand, 23118389 - 23118309
Alignment:
Q  63 ctaactgctcctaaataactgtatattaaaataactaaccgcatcagcaattaccctatcaataccacctgacacctaaca 143  Q
    |||| ||||||||||||||| |||||||||||||||||| | ||||||| ||||||||| ||||||||| || ||||||||    
T  23118389 ctaattgctcctaaataactatatattaaaataactaactggatcagcagttaccctatgaataccacccgatacctaaca 23118309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 98
Target Start/End: Original strand, 29418505 - 29418540
Alignment:
Q  63 ctaactgctcctaaataactgtatattaaaataact 98  Q
    |||||||||||||||||||| |||||||||||||||    
T  29418505 ctaactgctcctaaataactatatattaaaataact 29418540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 76; Significance: 1e-34; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 84 - 195
Target Start/End: Complemental strand, 28876625 - 28876514
Alignment:
Q  84 tatattaaaataactaaccgcatcagcaattaccctatcaataccacctgacacctaacattaccgactgctagaaaaacagtcttgtcctcaaggctga 183  Q
    ||||||||||||||| || ||||||||| | ||||||||||||||||| || |||||||||||||||| ||||||||||||| |||||||||||||||||    
T  28876625 tatattaaaataactgactgcatcagcagtcaccctatcaataccaccggatacctaacattaccgaccgctagaaaaacagccttgtcctcaaggctga 28876526  T
Q  184 gataaagaaact 195  Q
    | ||||||||||    
T  28876525 gttaaagaaact 28876514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 680 - 804
Target Start/End: Complemental strand, 28876233 - 28876109
Alignment:
Q  680 ttctccatttctgcatcaatgatcttttccgacgaaggtgaaatttcgttgatgtaccttccttctccatcgctgatggtcttctttaagaccggttcat 779  Q
    |||||||||||||||||||  | ||||||||| |||||||||||||| |||| ||||||||||||||||||| ||||| |||||| ||| || |||||||    
T  28876233 ttctccatttctgcatcaacaaccttttccgaagaaggtgaaatttcattgacgtaccttccttctccatcgttgatgatcttctctaatactggttcat 28876134  T
Q  780 tgtgtttttctgtcatcttccacag 804  Q
     ||||||||||| ||||||||||||    
T  28876133 cgtgtttttctgccatcttccacag 28876109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 680 - 804
Target Start/End: Complemental strand, 51837206 - 51837082
Alignment:
Q  680 ttctccatttctgcatcaatgatcttttccgacgaaggtgaaatttcgttgatgtaccttccttctccatcgctgatggtcttctttaagaccggttcat 779  Q
    |||||||||||||||||||  | ||||||||| |||||||||||||| |||| ||||||||||||||||||| ||||| |||||| ||| || |||||||    
T  51837206 ttctccatttctgcatcaacaaccttttccgaagaaggtgaaatttcattgacgtaccttccttctccatcgttgatgatcttctctaatactggttcat 51837107  T
Q  780 tgtgtttttctgtcatcttccacag 804  Q
     ||||||||||| ||||||||||||    
T  51837106 cgtgtttttctgccatcttccacag 51837082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 63 - 143
Target Start/End: Complemental strand, 37810897 - 37810817
Alignment:
Q  63 ctaactgctcctaaataactgtatattaaaataactaaccgcatcagcaattaccctatcaataccacctgacacctaaca 143  Q
    |||||||||||||||||||| ||||||||||||||| || ||||||||| ||||||||||||||||||| || ||||||||    
T  37810897 ctaactgctcctaaataactatatattaaaataactgactgcatcagcagttaccctatcaataccaccggatacctaaca 37810817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 84 - 181
Target Start/End: Complemental strand, 51837629 - 51837532
Alignment:
Q  84 tatattaaaataactaaccgcatcagcaattaccctatcaataccacctgacacctaacattaccgactgctagaaaaacagtcttgtcctcaaggct 181  Q
    ||||||||||||||| || ||||||||| | ||||||||||| ||||| || ||||||||| ||||||  ||||||||||||  ||||||||||||||    
T  51837629 tatattaaaataactgactgcatcagcagtcaccctatcaatgccaccggatacctaacatcaccgacctctagaaaaacagcgttgtcctcaaggct 51837532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 65 - 143
Target Start/End: Original strand, 19620688 - 19620766
Alignment:
Q  65 aactgctcctaaataactgtatattaaaataactaaccgcatcagcaattaccctatcaataccacctgacacctaaca 143  Q
    |||| ||||||||||| ||||||||||||||||  || |||||| || ||||||||||||||||| | || ||||||||    
T  19620688 aactactcctaaataattgtatattaaaataaccgactgcatcaacatttaccctatcaataccatccgatacctaaca 19620766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 84 - 143
Target Start/End: Complemental strand, 28875394 - 28875335
Alignment:
Q  84 tatattaaaataactaaccgcatcagcaattaccctatcaataccacctgacacctaaca 143  Q
    ||||||||||||||| || ||||||||| | ||||||||||||||||| || ||||||||    
T  28875394 tatattaaaataactgactgcatcagcagtcaccctatcaataccaccagatacctaaca 28875335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 84 - 143
Target Start/End: Original strand, 44031802 - 44031861
Alignment:
Q  84 tatattaaaataactaaccgcatcagcaattaccctatcaataccacctgacacctaaca 143  Q
    ||||||||||||||  || ||||||||| ||||||||||||||||||| || ||||||||    
T  44031802 tatattaaaataaccgactgcatcagcagttaccctatcaataccaccagatacctaaca 44031861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 153 - 195
Target Start/End: Complemental strand, 51837529 - 51837487
Alignment:
Q  153 gctagaaaaacagtcttgtcctcaaggctgagataaagaaact 195  Q
    ||||||||||||| |||||||||||||||||| ||||||||||    
T  51837529 gctagaaaaacagccttgtcctcaaggctgagttaaagaaact 51837487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 98
Target Start/End: Complemental strand, 28875435 - 28875400
Alignment:
Q  63 ctaactgctcctaaataactgtatattaaaataact 98  Q
    |||||||||||||||||||| |||||||||||||||    
T  28875435 ctaactgctcctaaataactatatattaaaataact 28875400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 98
Target Start/End: Complemental strand, 51836408 - 51836373
Alignment:
Q  63 ctaactgctcctaaataactgtatattaaaataact 98  Q
    |||||||||||||||||||| |||||||||||||||    
T  51836408 ctaactgctcctaaataactatatattaaaataact 51836373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 63 - 101
Target Start/End: Original strand, 44031741 - 44031779
Alignment:
Q  63 ctaactgctcctaaataactgtatattaaaataactaac 101  Q
    ||||||| |||||||||||| ||||||||||||||||||    
T  44031741 ctaactgttcctaaataactatatattaaaataactaac 44031779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 6e-21; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 63 - 143
Target Start/End: Complemental strand, 4518842 - 4518762
Alignment:
Q  63 ctaactgctcctaaataactgtatattaaaataactaaccgcatcagcaattaccctatcaataccacctgacacctaaca 143  Q
    |||||||||||||||||||| ||||||||||||||| || || |||||| ||||||||||||||||||| || ||||||||    
T  4518842 ctaactgctcctaaataactatatattaaaataactgactgcgtcagcagttaccctatcaataccaccagatacctaaca 4518762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 63 - 143
Target Start/End: Complemental strand, 44112703 - 44112623
Alignment:
Q  63 ctaactgctcctaaataactgtatattaaaataactaaccgcatcagcaattaccctatcaataccacctgacacctaaca 143  Q
    |||||||||||||||||||  ||||||||||||||| || ||||||||| ||||||||||||| ||||| || ||||||||    
T  44112703 ctaactgctcctaaataacaatatattaaaataactgactgcatcagcagttaccctatcaatcccaccggatacctaaca 44112623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 65 - 124
Target Start/End: Original strand, 8489190 - 8489249
Alignment:
Q  65 aactgctcctaaataactgtatattaaaataactaaccgcatcagcaattaccctatcaa 124  Q
    ||||||||||||||||||||||||||||| |||| |  ||||||||| ||||||||||||    
T  8489190 aactgctcctaaataactgtatattaaaacaactgattgcatcagcagttaccctatcaa 8489249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 143
Target Start/End: Original strand, 44113183 - 44113234
Alignment:
Q  92 aataactaaccgcatcagcaattaccctatcaataccacctgacacctaaca 143  Q
    ||||||| || ||||||||| ||||||||||||||||||| || ||||||||    
T  44113183 aataactgactgcatcagcagttaccctatcaataccaccggatacctaaca 44113234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 34 - 76
Target Start/End: Complemental strand, 44112777 - 44112735
Alignment:
Q  34 taatcaacacaaataactgcataaactgactaactgctcctaa 76  Q
    ||||||| |||||| ||||||||||||| ||||||||||||||    
T  44112777 taatcaatacaaattactgcataaactgcctaactgctcctaa 44112735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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