View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17554_low_11 (Length: 380)
Name: NF17554_low_11
Description: NF17554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17554_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 167; Significance: 2e-89; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 15 - 193
Target Start/End: Original strand, 34325421 - 34325599
Alignment:
| Q |
15 |
gaggaatggtgatatatttttcaaaaaagaagatgaaaaaatagtctgctatgatttaagtacacgcatggttgaggaactcggtcttgaagaagcacca |
114 |
Q |
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|||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
34325421 |
gaggaatggtgatatatttttcgaaaaaaaagatgaaaaaatagtctgctatgatttaagtacacacatggttgaggaactcggtcttgaagaagcacca |
34325520 |
T |
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| Q |
115 |
tcaaatagaataatttacaagaaaaagtggtttgtcaaatccagtgaatcattagttggttttcttgttctcaactaag |
193 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34325521 |
tcaaatagaataatttacaagaaaaagtggtttgtcaaatccagtgaatcattagttggttttcttgttctcaactaag |
34325599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 192 - 365
Target Start/End: Original strand, 34326431 - 34326604
Alignment:
| Q |
192 |
agtgtctggtgcggtaatggtggtttttggggtctgttacgcgggtgctgcggctttggtatgctgctgttctgatttttcggctaggagtatatgacag |
291 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34326431 |
agtgtctggtgcggtaatggtggtttttggggtctgttacgtgggtgctgcggctttggtatgctgctgttctgatttttcggctaggagtatatgacag |
34326530 |
T |
|
| Q |
292 |
cctccctgctgtcctgcttctttacacctgtgctgctgtcctgttgctggtctggttcgcctgactggtttttc |
365 |
Q |
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|||| |||||||||||||||||| ||||||||||||||| |||||||||||||||| |||||||||||||||| |
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| T |
34326531 |
cctcgctgctgtcctgcttctttgcacctgtgctgctgtgctgttgctggtctggtatgcctgactggtttttc |
34326604 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 15 - 193
Target Start/End: Complemental strand, 29352399 - 29352218
Alignment:
| Q |
15 |
gaggaatggtgatatatt-tttcaaaaaagaagatgaaaaaatagtctgctatgatttaagtacacgcatggttgagga---actcggtcttgaagaagc |
110 |
Q |
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|||||||||||||||||| |||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| |
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| T |
29352399 |
gaggaatggtgatatattctttcaaaaaa-aagataaaaaaatagtctgctatgatttaagtacacgcatggttgaggaggaacttggtcttgaagaagc |
29352301 |
T |
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| Q |
111 |
accatcaaatagaataatttacaagaaaaagtggtttgtcaaatccagtgaatcattagttggttttcttgttctcaactaag |
193 |
Q |
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|||||||||||||||||||||||||||| ||||||||| |||||||| | | ||||||||||||||||||||| ||||||| |
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| T |
29352300 |
accatcaaatagaataatttacaagaaagagtggtttgacaaatccaataacagattagttggttttcttgttctaaactaag |
29352218 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 151; Significance: 8e-80; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 7 - 193
Target Start/End: Original strand, 4028006 - 4028192
Alignment:
| Q |
7 |
ggagcagagaggaatggtgatatatttttcaaaaaagaagatgaaaaaatagtctgctatgatttaagtacacgcatggttgaggaactcggtcttgaag |
106 |
Q |
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||||||| |||||||||||||||||| ||||||||| ||| | ||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| |
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| T |
4028006 |
ggagcagggaggaatggtgatatattcttcaaaaaaaaaggtaaaaaaatagtctgctatgatttaagcacacacatggttgaggaactcggtcttgaag |
4028105 |
T |
|
| Q |
107 |
aagcaccatcaaatagaataatttacaagaaaaagtggtttgtcaaatccagtgaatcattagttggttttcttgttctcaactaag |
193 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| |
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| T |
4028106 |
aagcaccatcaaatagaataatttacaagaaaaagtggtttgtcaattccagtaaatcattagttggttttcttgttctcaactaag |
4028192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 192 - 365
Target Start/End: Original strand, 4028507 - 4028680
Alignment:
| Q |
192 |
agtgtctggtgcggtaatggtggtttttggggtctgttacgcgggtgctgcggctttggtatgctgctgttctgatttttcggctaggagtatatgacag |
291 |
Q |
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|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| | |
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| T |
4028507 |
agtgtctggtgcggtaatggtggtttttggggtctgttatgcgggtgctgcggctttggtatgctgctgttctgcttttttggctaggagtatatgacgg |
4028606 |
T |
|
| Q |
292 |
cctccctgctgtcctgcttctttacacctgtgctgctgtcctgttgctggtctggttcgcctgactggtttttc |
365 |
Q |
| |
|
|||| |||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
4028607 |
cctcactgctgtcctgcttctttgcacctgtgctgctgtcctgttgctggtctggtatgcctgactggtttttc |
4028680 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 18 - 193
Target Start/End: Original strand, 30249919 - 30250097
Alignment:
| Q |
18 |
gaatggtgatatatttttc-aaaaaagaa--gatgaaaaaatagtctgctatgatttaagtacacgcatggttgaggaactcggtcttgaagaagcacca |
114 |
Q |
| |
|
||||||||||||||| ||| |||||| || |||| |||| |||||||||||||||||||||||| |||| |||||||| || ||||||||||| ||||| |
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| T |
30249919 |
gaatggtgatatattcttcgaaaaaataaacgatggaaaattagtctgctatgatttaagtacacacatgtttgaggaaatcagtcttgaagaaccacca |
30250018 |
T |
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| Q |
115 |
tcaaatagaataatttacaagaaaaagtggtttgtcaaatccagtgaatcattagttggttttcttgttctcaactaag |
193 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| || ||| | | |||||||||||||||||||| ||||||||| |
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| T |
30250019 |
tcaaatagaataacttacaagaaaaagtggtttatcgaattggatcacacattagttggttttcttgttttcaactaag |
30250097 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 193 - 330
Target Start/End: Complemental strand, 28111041 - 28110904
Alignment:
| Q |
193 |
gtgtctggtgcggtaatggtggtttttggggtctgttacgcgggtgctgcggctttggtatgctgctgttctgatttttcggctaggagtatatgacagc |
292 |
Q |
| |
|
|||| ||||||||||||||||| |||| ||| || ||| | ||| | || |||||||||||||||||| |||| | ||| |||||||||||||||||||| |
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| T |
28111041 |
gtgtttggtgcggtaatggtggatttttgggccttttaggtgggcgttgaggctttggtatgctgctgctctgctgttttggctaggagtatatgacagc |
28110942 |
T |
|
| Q |
293 |
ctccctgctgtcctgcttctttacacctgtgctgctgt |
330 |
Q |
| |
|
||| ||||||||||||||||| |||||| |||||||| |
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| T |
28110941 |
ctcattgctgtcctgcttctttgcacctgcgctgctgt |
28110904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 193 - 330
Target Start/End: Original strand, 24837208 - 24837345
Alignment:
| Q |
193 |
gtgtctggtgcggtaatggtggtttttggggtctgttacgcgggtgctgcggctttggtatgctgctgttctgatttttcggctaggagtatatgacagc |
292 |
Q |
| |
|
|||| ||||||||||||||||| |||| ||| || ||| | ||| | || |||||||||||||||||| |||| | ||| |||||||||||||||||||| |
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| T |
24837208 |
gtgtttggtgcggtaatggtggatttttgggccttttaggtgggcgttgaggctttggtatgctgctgctctgctgttttggctaggagtatatgacagc |
24837307 |
T |
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| Q |
293 |
ctccctgctgtcctgcttctttacacctgtgctgctgt |
330 |
Q |
| |
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||| ||||||||||||||||| |||||| |||||||| |
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| T |
24837308 |
ctcattgctgtcctgcttctttgcacctgcgctgctgt |
24837345 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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