View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17554_low_14 (Length: 339)
Name: NF17554_low_14
Description: NF17554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17554_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 15 - 325
Target Start/End: Original strand, 27301987 - 27302297
Alignment:
| Q |
15 |
attttttatagtgtaaaatctatcagaagataaggttcaatcgacattttgttcatcgaatgttatctttcgataagcttattttaaaggttgatcaaca |
114 |
Q |
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| T |
27301987 |
attttttatagtgtaaaatctatcagaagataaggttcaatcgacattttgttcattgaatgttatctttcgataagcttattttaaaggttgatcaaca |
27302086 |
T |
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| Q |
115 |
aatatcgaacaaaagacaaatttgttgaactaacttaagacccaaatacctacatctccatttcttggcaaattactcaaaccaccctagaatccacatg |
214 |
Q |
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| T |
27302087 |
aatatccatcaaaagacaaatttgttgaactaacctaagacccaaatacctacatctccatttctaggcaaattactcaaaccacccgagaatccacatg |
27302186 |
T |
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| Q |
215 |
aacctcaacctatgaaaaccataacttctagacaatcacaaactttctagaacatctcataactcaaatacatgcccacttcctcaaattaagcctccac |
314 |
Q |
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| T |
27302187 |
aacctcaacctatgaaaaccataacttctagacaatcacaaactttccggaacatctcataactcaaatacatgcccacttcctcaaattaagcctccac |
27302286 |
T |
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| Q |
315 |
ggacaacttgt |
325 |
Q |
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| T |
27302287 |
gaacaacttgt |
27302297 |
T |
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