View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17554_low_16 (Length: 309)
Name: NF17554_low_16
Description: NF17554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17554_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 14 - 297
Target Start/End: Complemental strand, 4193479 - 4193192
Alignment:
| Q |
14 |
catcaattaaattaagccaaaactaagaatcatgtattttctttgatgttatatatatttagatactactatagcagtagtagtattttttccttnnnnn |
113 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4193479 |
catcaattaaattaagcctaaactaagaatcatgtattttctttgatgttatatatatttagatactactatagcagtagtagtattttttccttaaaaa |
4193380 |
T |
|
| Q |
114 |
nntaagtcaagtgagtgtccacgtagtgggtgtaatttgtgttgattgatt----caatttaagttgttataggacaagaattccacatgtgctgtggga |
209 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4193379 |
aataagtcaagtgagtgttcacgtagtgggtgtaatttgtgttgattgattgattcaatttaagttgttataggacaagaattccacatgtgctgtggga |
4193280 |
T |
|
| Q |
210 |
tgctttgaaagcgacacttttggagatgtgggcataataaaagattcttccttttaaatctgtgactaactgtggtgtattgttgttc |
297 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4193279 |
tgctttgaaagcgacacttttggagatgtgggcataataaaagattcttccttttaaatctgtgactaactgtggtgtattgttgttc |
4193192 |
T |
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