View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17554_low_19 (Length: 245)
Name: NF17554_low_19
Description: NF17554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17554_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 42229140 - 42229381
Alignment:
| Q |
1 |
ttttatgattggctatttggtccaatagtatgattcattgcgtttttaaacggttcaattatatgagtagttgttgacacagtttatttagaacttttat |
100 |
Q |
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| T |
42229140 |
ttttatgattggctatttggtccaatagtatgattcattgcgtttttaaacggttcaattatatgagtagttgttgacacagtttatttagaacttttat |
42229239 |
T |
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| Q |
101 |
ttaattccatgtgacatgctatatcccattgattaattactcgggtcactgttaattgtaatgtatttgaggaagaattagtcagctatggaatgatcac |
200 |
Q |
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| T |
42229240 |
ttaattccatgtgacatgctatatcccattgattaattactcgggtcactgttaattgtaatgtatttgaggaagaattagtcagctatggaatgatcac |
42229339 |
T |
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| Q |
201 |
acgcttccaaacatcatgtttctctataaatacatattcttc |
242 |
Q |
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| T |
42229340 |
acgcttccaaacatcatgtttctctataaatacatattcttc |
42229381 |
T |
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