View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17554_low_2 (Length: 776)
Name: NF17554_low_2
Description: NF17554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17554_low_2 |
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| [»] chr3 (6 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 683; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 683; E-Value: 0
Query Start/End: Original strand, 15 - 776
Target Start/End: Original strand, 35928004 - 35928764
Alignment:
| Q |
15 |
agtcagaagttgtgtttgaataggaaaatcccactcctgctggagactctaagaatagtacatttgcaactgcatatttcataatgataaactggtaagt |
114 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35928004 |
agtcagaagttgtgtttgaataggaaaatcccactcctgctggagactctaagaatagtacatttgcaactgcatatttcataatgataaactggtaagt |
35928103 |
T |
|
| Q |
115 |
tattcatgtctaagaataaatgcatcataagaaacaatttcattctatcgatgattgtttcaccttcagtccaagcatatgggttacggtatagtgtttt |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
35928104 |
tattcatgtctaagaataaatgcatcataagaaacaatttcattctatcgatgattgtttcaccttcagtccaagcatattggttacggtatagtgtttt |
35928203 |
T |
|
| Q |
215 |
gccatcagagttgattctgaagggtcctagctcctgaaaggctccataccccagtgaggaacagccaggtcctgtgagtttcaaacattatgttgtcaga |
314 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
35928204 |
gccatcagagttgattctgaagggtcctagctcctgaaaggctccataccccagtgaggaacagccaggtcctgtaagtttcaaacattatgttgtcaga |
35928303 |
T |
|
| Q |
315 |
atcaaagctgtcaaactcgagagttaggtaaatttgtttatcttttgtccactcaactcgttaacttgc--tagtaaaatcaaatgtttatctagattta |
412 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| ||||||||| ||||||||||||||||||||||||||||| |
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| T |
35928304 |
atcaaagctgtcaaactcgagagttaggtaaatttgtttatctttggtcgactcaactctttaacttgctatagtaaaatcaaatgtttatctagattta |
35928403 |
T |
|
| Q |
413 |
attagagtttaccagaactcataagagttcactataaaaggaggagtattcatgtgaggtagttcgtttttatgactcgtaattgtaaattcgtaaaaga |
512 |
Q |
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||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
35928404 |
attagagtttaccggaactcataagagttcactataaa---aggagtattcatgtgaggtagttcgtttttatgactcataattgtaaattcgtaaaaga |
35928500 |
T |
|
| Q |
513 |
tttcttgaggtttttctaaccatgatcaaaatcatttcatcaagaggtaagtttagatcatgatgctcaaaataaattaataaccaggttgcactatgtt |
612 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
35928501 |
tttctcgaggtttttctaaccatgatcaaaatcatttcatcaagaggtaagtttagatcatgatgctcaaaataaattaataaccaggtttcactatgtt |
35928600 |
T |
|
| Q |
613 |
ctttcattttcaatatgaaaataatattttgttcttatgtaaaaatgtgctaccctaccatgtttgactactgtgaaaatcaagttatgtcatcaatcaa |
712 |
Q |
| |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
35928601 |
ctttcattttcaatataaaaataatattttgttcttatgtaaaaatgtgctaccctaccatgtttgactactatgaaaatcaagttatgtcatcaatcaa |
35928700 |
T |
|
| Q |
713 |
aatattaactaataatatatcattcctttctatattttgatagaaatatcatatcatttcttct |
776 |
Q |
| |
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||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||| |
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| T |
35928701 |
aatattaactaataatatatcattcctttctttattttgatagaaataatatatcatttcttct |
35928764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 15 - 327
Target Start/End: Original strand, 35910604 - 35910924
Alignment:
| Q |
15 |
agtcagaagttgtgtttgaataggaaaatcccactcctgctggagactctaagaatagtacatttgcaactgcatatttcataatgataaac--tggtaa |
112 |
Q |
| |
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||||||| ||||||||||| ||||||||||| |||||||||||||| |||||||| ||||| || || ||||||||||||||||||||| | |||||| |
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| T |
35910604 |
agtcagatgttgtgtttgagtaggaaaatcctactcctgctggagattctaagaagagtacgttcgccactgcatatttcataatgatataagttggtaa |
35910703 |
T |
|
| Q |
113 |
gttattcatgtctaagaataaatgcatcataagaaacaatttcattctatcgatg---------attgtttcaccttcagtccaagcatatgggttacgg |
203 |
Q |
| |
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| ||||||||||| |||| ||||||||||||||||||| | ||| ||| |||| ||||||||||||||| |||||||||||||||||||| |
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| T |
35910704 |
gatattcatgtctcagaa---atgcatcataagaaacaatgtaattatattgatgatgatgatgattgtttcaccttcattccaagcatatgggttacgg |
35910800 |
T |
|
| Q |
204 |
tatagtgttttgccatcagagttgattctgaagggtcctagctcctgaaaggctccataccccagtgaggaacagccaggtcctgtgagtttcaaacatt |
303 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35910801 |
tatagtgttttgccatcagagttgattctgaagggtcctagctcctgaaaggctccataccccagtgaggaacagccaggtcctgtgagtttcaaacatt |
35910900 |
T |
|
| Q |
304 |
atgttgtcagaatcaaagctgtca |
327 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
35910901 |
atgttgtcagaatcaaagctgtca |
35910924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 149; E-Value: 3e-78
Query Start/End: Original strand, 15 - 337
Target Start/End: Original strand, 35915039 - 35915361
Alignment:
| Q |
15 |
agtcagaagttgtgtttgaataggaaaatcccactcctgctggagactctaagaatagtacatttgcaactgcatatttcataatgataaac--tggtaa |
112 |
Q |
| |
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||||||| ||||||||||| ||||||||||| |||||||| ||||| || ||||| |||||||||||||||||||||||||||| |||| | |||||| |
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| T |
35915039 |
agtcagatgttgtgtttgagtaggaaaatcctactcctgccggagattccaagaagagtacatttgcaactgcatatttcataaggatataagttggtaa |
35915138 |
T |
|
| Q |
113 |
gttattcatgtctaagaataaatgcatcataa-gaaacaatttcattctatcgatgattgtttcaccttcagtccaagcatatgggttacggtatagtgt |
211 |
Q |
| |
|
| || |||||||| || ||||||||||| |||| || || || ||| ||||||||| ||||||||| |||||||||||||||| ||||||| ||| |
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| T |
35915139 |
gataatcatgtctcaggc---atgcatcataaagaaataaattagttatattgatgattgtctcaccttcattccaagcatatgggttgcggtataatgt |
35915235 |
T |
|
| Q |
212 |
tttgccatcagagttgattctgaagggtcctagctcctgaaaggctccataccccagtgaggaacagccaggtcctgtgagtttcaaacattatgttgtc |
311 |
Q |
| |
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||| |||||||| |||| |||||||||||| ||||| |||||||||||||| |||||||||||||| |||||||||| |||||||||||||||||||||| |
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| T |
35915236 |
ttttccatcagaattgactctgaagggtccgagctcttgaaaggctccatatcccagtgaggaacaaccaggtcctgcgagtttcaaacattatgttgtc |
35915335 |
T |
|
| Q |
312 |
agaatcaaagctgtcaaactcgagag |
337 |
Q |
| |
|
| |||| ||||| ||||||||||||| |
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| T |
35915336 |
aaaatcgaagctttcaaactcgagag |
35915361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 145; E-Value: 7e-76
Query Start/End: Original strand, 15 - 399
Target Start/End: Original strand, 35934817 - 35935205
Alignment:
| Q |
15 |
agtcagaagttgtgtttgaataggaaaatcccactcctgctggagactctaagaatagtacatttgcaactgcatat--ttcataatgataaactggtaa |
112 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| || ||||||||||| |||| | |
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|
| T |
35934817 |
agtcagaagttgtgtttgagtaggaaaatcccactcctgctggagactctaagaagagtatatttgcaactgcatatattttataatgataaattggtta |
35934916 |
T |
|
| Q |
113 |
gttattcatgtctaagaataaatgcatcata-agaaacaatttcattctatcgat---gattgtttcaccttcagtccaagcatatgggttacggtatag |
208 |
Q |
| |
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| | ||||||||| ||||||||| || ||||| |||| || ||||||| |||||| ||||||| ||||||||||| |||||||||||| |
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| T |
35934917 |
gatgttcatgtctct---taaatgcataatggagaaaacatttaatcatatcgattatgattgtcataccttcactccaagcatattggttacggtataa |
35935013 |
T |
|
| Q |
209 |
tgttttgccatcagagttgattctgaagggtcctagctcctgaaaggctccataccccagtgaggaacagccaggtcctgtgagtttcaaacattatgtt |
308 |
Q |
| |
|
|||||| ||||||||||||| |||||||||||||||||||| ||||||||||||||| ||||| |||||||||||||||||| |||||||| |||||||| |
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|
| T |
35935014 |
tgtttttccatcagagttgactctgaagggtcctagctcctcaaaggctccatacccaagtgaagaacagccaggtcctgtgtgtttcaaatattatgtt |
35935113 |
T |
|
| Q |
309 |
gtcagaatcaaagctgtcaaactcgagagt-taggtaaatttgtttatcttttgtccactcaactcgttaacttgctagtaaaatcaaatgt |
399 |
Q |
| |
|
|||| |||||| | |||||||| ||||| |||||||| ||| || ||| ||| |||| |||| | ||||| |||||||||||||||| |
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|
| T |
35935114 |
atcagcatcaaatttttcaaactctagagtctaggtaaacatgtgtagcttctgtagactcgactcatatacttgttagtaaaatcaaatgt |
35935205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 25 - 338
Target Start/End: Original strand, 35921421 - 35921733
Alignment:
| Q |
25 |
tgtgtttgaataggaaaatcccactcctgctggagactctaagaatagtacatttgcaactgcatatttcataatga--taaactggtaagttattcatg |
122 |
Q |
| |
|
||||||||| ||||||||||| || ||||||||||| || ||||| ||||||||||| |||||||||||||||| || ||| | |||| || ||||| |
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|
| T |
35921421 |
tgtgtttgagtaggaaaatcctacccctgctggagattccaagaagagtacatttgccactgcatatttcataaggagttaagtttctaagataatcatg |
35921520 |
T |
|
| Q |
123 |
tctaagaataaatgcatcataagaaacaatttcattctatcgatgattgtttcaccttcagtccaagcatatgggttacggtatagtgttttgccatcag |
222 |
Q |
| |
|
||| |||| ||||||||||| |||| || || |||||||||| | ||||||||| |||||||||||||||||||||||| |||||||||||||| |
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| T |
35921521 |
tctcagaa---atgcatcataaataacacattagttatatcgatgatcatctcaccttcattccaagcatatgggttacggtataatgttttgccatcag |
35921617 |
T |
|
| Q |
223 |
agttgattctgaagggtcctagctcctgaaaggctccataccccagtgaggaacagccaggtcctgtgagtttcaaacattatgttgtcagaatcaaagc |
322 |
Q |
| |
|
|||||| |||||||||||| ||||||| |||||||||||| |||||||||||||| |||||||||||||||||||||||||||| ||||| ||| |||| |
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| T |
35921618 |
agttgactctgaagggtccgagctcctcaaaggctccatatcccagtgaggaacaaccaggtcctgtgagtttcaaacattatgatgtcaaaattgaagc |
35921717 |
T |
|
| Q |
323 |
tgtcaaactcgagagt |
338 |
Q |
| |
|
|| |||||| |||||| |
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| T |
35921718 |
tgacaaacttgagagt |
35921733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 136; E-Value: 2e-70
Query Start/End: Original strand, 15 - 311
Target Start/End: Original strand, 35940380 - 35940685
Alignment:
| Q |
15 |
agtcagaagttgtgtttgaataggaaaatcccactcctgctggagactctaagaatagtacatttgcaactgcatatttcataatgataaac--tggtaa |
112 |
Q |
| |
|
||||||| ||||||||||| ||||||||||| | |||||||||||| || ||||| ||||| || || ||||||||||||||||||||| | | |||| |
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| T |
35940380 |
agtcagatgttgtgtttgagtaggaaaatcctattcctgctggagattccaagaagagtacgttcgccactgcatatttcataatgatataagtttgtaa |
35940479 |
T |
|
| Q |
113 |
gttattcatgtctaagaataaatgcatcataa-gaaacaatttcattctatcgatg---------attgtttcaccttcagtccaagcatatgggttacg |
202 |
Q |
| |
|
| ||||||||||| |||| ||||||||||| |||||||| | ||| ||| |||| ||||||||||||||| ||||||||||||||||||| |
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| T |
35940480 |
gatattcatgtctcagaa---atgcatcataaagaaacaatgtaattatattgatgatgatgatgattgtttcaccttcattccaagcatatgggttacg |
35940576 |
T |
|
| Q |
203 |
gtatagtgttttgccatcagagttgattctgaagggtcctagctcctgaaaggctccataccccagtgaggaacagccaggtcctgtgagtttcaaacat |
302 |
Q |
| |
|
|||||||||||| ||||||||||||| |||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||||||| | ||||||||| |
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| T |
35940577 |
gtatagtgtttttccatcagagttgactctgaagggtccgagctcctgaaaggctccatacccaagtgaagaacagccaggtcctgtgtggttcaaacat |
35940676 |
T |
|
| Q |
303 |
tatgttgtc |
311 |
Q |
| |
|
||||||||| |
|
|
| T |
35940677 |
tatgttgtc |
35940685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 27 - 87
Target Start/End: Original strand, 6208979 - 6209039
Alignment:
| Q |
27 |
tgtttgaataggaaaatcccactcctgctggagactctaagaatagtacatttgcaactgc |
87 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||| || | |||||||| ||||| |
|
|
| T |
6208979 |
tgtttgaataggaaaatccaactcctgctggagactctaaaaagataacatttgccactgc |
6209039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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