View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17554_low_22 (Length: 231)
Name: NF17554_low_22
Description: NF17554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17554_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 189; Significance: 1e-102; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 20 - 216
Target Start/End: Complemental strand, 1948103 - 1947907
Alignment:
| Q |
20 |
gcattatgagctgattttctaccagcatagtcaactaaatgtgacatgctagatgaaactatcctttttgttgcaccttcttgcattgcataaatttgaa |
119 |
Q |
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| T |
1948103 |
gcattatgagctgattttctaccagcatagtcaactaaatgtgacatgctagatgaaactaccctttttgttgcaccttcttgcattgcataaatttgaa |
1948004 |
T |
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| Q |
120 |
gtaactcaagtaagaatgatgcatcaacgatcatcatccaaaccatcgtttctccattcaaatctaagaatttgtggtaacatcctctaaccctttg |
216 |
Q |
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| T |
1948003 |
gtaactcaagtaagaatgatgcatcaacgatcatcatccaaaccatcgtttctccgttcaaatctaagaatttgtggtaacatcctctaaccctttg |
1947907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 20 - 216
Target Start/End: Original strand, 1978303 - 1978499
Alignment:
| Q |
20 |
gcattatgagctgattttctaccagcatagtcaactaaatgtgacatgctagatgaaactatcctttttgttgcaccttcttgcattgcataaatttgaa |
119 |
Q |
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| T |
1978303 |
gcattatgagctgattttctaccagcatagtcaactaaatgtgacatgcttgacaaaacttccctctttggttcaccttcttgcattgcataaatttgaa |
1978402 |
T |
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| Q |
120 |
gtaactcaagtaagaatgatgcatcaacgatcatcatccaaaccatcgtttctccattcaaatctaagaatttgtggtaacatcctctaaccctttg |
216 |
Q |
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| T |
1978403 |
gtaactcgagtaagaatgatgcatcaacgatcatcatccaaaccatcgtttctccgttcaaatctaagaatttgtggtaacatgctctaactctttg |
1978499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 96 - 209
Target Start/End: Original strand, 1985294 - 1985407
Alignment:
| Q |
96 |
cttcttgcattgcataaatttgaagtaactcaagtaagaatgatgcatcaacgatcatcatccaaaccatcgtttctccattcaaatctaagaatttgtg |
195 |
Q |
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| T |
1985294 |
cttcttgcatggcataaaattgaaggaactcaagtaggaatgatgcatcaacaatcatcatccacgccaaggtttcgccattcaaatccaagaatttgtg |
1985393 |
T |
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| Q |
196 |
gtaacatcctctaa |
209 |
Q |
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| T |
1985394 |
gtagcatgctctaa |
1985407 |
T |
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