View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17554_low_3 (Length: 760)

Name: NF17554_low_3
Description: NF17554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17554_low_3
NF17554_low_3
[»] chr1 (22 HSPs)
chr1 (1-751)||(6487647-6488411)
chr1 (584-669)||(526996-527081)
chr1 (584-667)||(26040972-26041055)
chr1 (584-669)||(39858347-39858432)
chr1 (584-669)||(46845753-46845838)
chr1 (611-672)||(1673366-1673427)
chr1 (598-671)||(1994951-1995024)
chr1 (611-671)||(27325752-27325812)
chr1 (586-670)||(44797565-44797649)
chr1 (1-134)||(8382237-8382370)
chr1 (588-665)||(29637311-29637388)
chr1 (596-669)||(49430573-49430646)
chr1 (1-133)||(31834825-31834959)
chr1 (611-669)||(2403049-2403107)
chr1 (584-666)||(15225088-15225170)
chr1 (588-670)||(32267566-32267648)
chr1 (584-638)||(40314123-40314177)
chr1 (588-669)||(40294832-40294913)
chr1 (584-668)||(13276561-13276645)
chr1 (589-667)||(7178213-7178291)
chr1 (613-643)||(34311347-34311377)
chr1 (590-635)||(19989273-19989318)
[»] chr4 (21 HSPs)
chr4 (584-671)||(5817477-5817564)
chr4 (584-666)||(51579323-51579405)
chr4 (584-671)||(20107108-20107196)
chr4 (586-669)||(37605790-37605873)
chr4 (586-669)||(55281208-55281291)
chr4 (597-671)||(17044001-17044075)
chr4 (584-669)||(25784005-25784090)
chr4 (597-668)||(25164581-25164652)
chr4 (598-669)||(32525133-32525204)
chr4 (584-670)||(24059230-24059316)
chr4 (587-669)||(43749092-43749174)
chr4 (611-669)||(45996018-45996076)
chr4 (584-669)||(42179234-42179319)
chr4 (584-669)||(50498210-50498295)
chr4 (599-667)||(48525328-48525396)
chr4 (623-674)||(39631274-39631325)
chr4 (586-672)||(22364560-22364646)
chr4 (596-670)||(51579580-51579653)
chr4 (604-668)||(32290215-32290279)
chr4 (584-664)||(41277220-41277300)
chr4 (596-665)||(36851231-36851300)
[»] chr8 (17 HSPs)
chr8 (585-661)||(8368469-8368545)
chr8 (584-672)||(45413635-45413723)
chr8 (584-673)||(28897991-28898080)
chr8 (586-668)||(43066003-43066085)
chr8 (584-669)||(2599531-2599616)
chr8 (584-664)||(41075694-41075774)
chr8 (590-668)||(27497174-27497251)
chr8 (597-670)||(1993750-1993823)
chr8 (584-669)||(10391402-10391487)
chr8 (587-667)||(11904855-11904935)
chr8 (584-664)||(31774729-31774809)
chr8 (611-669)||(14342313-14342371)
chr8 (589-641)||(16465714-16465766)
chr8 (48-131)||(42351740-42351823)
chr8 (537-575)||(5749069-5749107)
chr8 (589-643)||(45502688-45502742)
chr8 (612-669)||(4077086-4077143)
[»] chr3 (12 HSPs)
chr3 (584-668)||(23004757-23004841)
chr3 (585-669)||(8330690-8330774)
chr3 (586-669)||(50989203-50989286)
chr3 (586-669)||(51092335-51092418)
chr3 (588-665)||(33288136-33288213)
chr3 (597-666)||(38247801-38247870)
chr3 (587-674)||(9271105-9271192)
chr3 (586-668)||(12224102-12224184)
chr3 (596-661)||(54713532-54713597)
chr3 (618-669)||(29915090-29915141)
chr3 (618-669)||(29964243-29964294)
chr3 (586-672)||(48034908-48034994)
[»] chr6 (8 HSPs)
chr6 (586-663)||(29429590-29429667)
chr6 (597-672)||(14314096-14314171)
chr6 (584-669)||(23915972-23916057)
chr6 (586-666)||(1244655-1244735)
chr6 (611-669)||(9045833-9045891)
chr6 (617-669)||(34792781-34792833)
chr6 (613-671)||(9521943-9522001)
chr6 (590-663)||(12748217-12748290)
[»] chr2 (13 HSPs)
chr2 (596-669)||(4434699-4434772)
chr2 (587-669)||(32599348-32599430)
chr2 (584-669)||(3121610-3121695)
chr2 (597-668)||(13697075-13697146)
chr2 (599-670)||(14945848-14945919)
chr2 (584-666)||(36272758-36272840)
chr2 (584-669)||(33299979-33300064)
chr2 (584-671)||(5562934-5563021)
chr2 (586-668)||(42061330-42061412)
chr2 (584-669)||(24475798-24475883)
chr2 (598-670)||(40095262-40095334)
chr2 (611-669)||(14242639-14242697)
chr2 (599-640)||(25333173-25333214)
[»] chr5 (8 HSPs)
chr5 (586-669)||(13988247-13988330)
chr5 (586-669)||(36890377-36890460)
chr5 (584-669)||(15285329-15285414)
chr5 (587-643)||(12248299-12248355)
chr5 (611-670)||(11247191-11247250)
chr5 (596-666)||(1447856-1447926)
chr5 (537-575)||(20151478-20151516)
chr5 (589-667)||(43100310-43100388)
[»] chr7 (12 HSPs)
chr7 (584-671)||(31741041-31741128)
chr7 (611-670)||(46576366-46576425)
chr7 (597-670)||(48460658-48460731)
chr7 (588-640)||(43359001-43359053)
chr7 (584-671)||(38754992-38755079)
chr7 (584-667)||(42974475-42974558)
chr7 (584-662)||(11752604-11752682)
chr7 (587-667)||(28713679-28713759)
chr7 (587-667)||(38349559-38349639)
chr7 (537-575)||(38754937-38754975)
chr7 (525-570)||(33496608-33496653)
chr7 (596-669)||(47480122-47480194)


Alignment Details
Target: chr1 (Bit Score: 511; Significance: 0; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 511; E-Value: 0
Query Start/End: Original strand, 1 - 751
Target Start/End: Complemental strand, 6488411 - 6487647
Alignment:
Q  1 gtttggtttagggatttgcaatggttgccacatgtttggaagcctttttgcagtgatttgaagaagccactatttgtagtttcactggaaacgtgacttc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6488411 gtttggtttagggatttgcaatggttgccacatgtttggaagcctttttgcagtgatttgaagaagccactatttgtagtttcactggaaacgtgacttc 6488312  T
Q  101 ttgccaaagttttggcctgatgtgaaaatggcactgcatagttaaatataggcgcagtcatgttacataatataataaaccat------------tttta 188  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||            |||||    
T  6488311 ttgccaaagttttggcctgatgtgaaaatggcactgcatagttaaatataggcgcagtcatgttacataatgtaataaaccatacactaagatagtttta 6488212  T
Q  189 cattgattagaaatcgacactaagcgtagtttataaaca-cattcacactcttcaatccaacaagatatcttttagaaagaatgaaatgataaaaactca 287  Q
    ||||| ||||||||||||||||||||||||||||||||| |||||| |||||||||| |||| ||| ||||||||||||||| |||||||||||||||||    
T  6488211 cattggttagaaatcgacactaagcgtagtttataaacaacattcatactcttcaattcaacgagacatcttttagaaagaacgaaatgataaaaactca 6488112  T
Q  288 cacaaggttcaaagcgcacaatacttaaaaaa-tgcactctagtgttgtgaagttgaggtcggaacttttgcgctagaatgcactctagtgttgtggagt 386  Q
    ||||||||||||| |||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6488111 cacaaggttcaaaacgcacaatacttaaaaaaatgcactctagtgttgtaaagttgaggtcggaacttttgcgctagaatgcactctagtgttgtggagt 6488012  T
Q  387 taacctcgacgggaggggtctattgtggtacacttaaatagttcaatcttgcttgagaatcgaatctaattatagtttataagcaacatacactcatcat 486  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||     
T  6488011 -aacctcgacgggaggggtctattgtggtacacttaaatagttcaatcttgcttgagaatcgaatctaattatagtttataaacaacatacactcatcaa 6487913  T
Q  487 tcaaacaaggctaatgtttcattgacactcnnnnnnnnccatatacacaatatacca--ccccatgtgagcgtgtgtgagagacaaaaaa--tannnnnn 582  Q
    |||||||||| |||||||||| ||||||||        |||||||||||||||||||  |||||| ||||||||||||||||||||||||  ||          
T  6487912 tcaaacaaggataatgtttcactgacactc--ttttttccatatacacaatataccatcccccatatgagcgtgtgtgagagacaaaaaaattatttttt 6487815  T
Q  583 ngtggggaccacgtggacacatgtcaccattgtgtgtggatgtacaagtggtacatgccacataaattagtctatgtatcactactcattaagcaataga 682  Q
     |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||      
T  6487814 tgtggggaccacgtggacacatgtcacaattgtgtgtggatgtacaagtggtacatgccacctaaattggtctatgtatcactactcattaagcaatatg 6487715  T
Q  683 nnnnnnnacaaagaacaaaaatgatgatgtgccgtattttaaatgaacgtgtcatacaatatgatgatg 751  Q
           || ||||||| ||||||||||||| |||||||||||||||||||||| ||||| ||||||||    
T  6487714 tttttttacgaagaacataaatgatgatgtgtcgtattttaaatgaacgtgtca-acaatctgatgatg 6487647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 584 - 669
Target Start/End: Original strand, 526996 - 527081
Alignment:
Q  584 gtggggaccacgtggacacatgtcaccattgtgtgtggatgtacaagtggtacatgccacataaattagtctatgtatcactactc 669  Q
    ||||||||||| |||||||||||||| ||||||| ||| |||| |||||||||||||||| |||  | ||||||||||||||||||    
T  526996 gtggggaccacatggacacatgtcacaattgtgtatgggtgtataagtggtacatgccacctaaggtggtctatgtatcactactc 527081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 584 - 667
Target Start/End: Complemental strand, 26041055 - 26040972
Alignment:
Q  584 gtggggaccacgtggacacatgtcaccattgtgtgtggatgtacaagtggtacatgccacataaattagtctatgtatcactac 667  Q
    |||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||| |||  | || | |||||||||||    
T  26041055 gtggggaccacgtggacacatgtcacaattgtatgtgggtgtacaagtggtacatgccacctaaggtggtttgtgtatcactac 26040972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 584 - 669
Target Start/End: Complemental strand, 39858432 - 39858347
Alignment:
Q  584 gtggggaccacgtggacacatgtcaccattgtgtgtggatgtacaagtggtacatgccacataaattagtctatgtatcactactc 669  Q
    ||||||||||| |||||||||||||| ||||||| ||| |||| |||||||| ||||||| |||  | ||||||||||||||||||    
T  39858432 gtggggaccacatggacacatgtcacaattgtgtatgggtgtataagtggtatatgccacctaaggtggtctatgtatcactactc 39858347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 584 - 669
Target Start/End: Original strand, 46845753 - 46845838
Alignment:
Q  584 gtggggaccacgtggacacatgtcaccattgtgtgtggatgtacaagtggtacatgccacataaattagtctatgtatcactactc 669  Q
    ||||||||||| |||||||||||||| ||||||| ||| |||| |||||||||||||||  |||  | ||||||||||||||||||    
T  46845753 gtggggaccacatggacacatgtcacaattgtgtatgggtgtataagtggtacatgccatctaaggtggtctatgtatcactactc 46845838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 611 - 672
Target Start/End: Complemental strand, 1673427 - 1673366
Alignment:
Q  611 attgtgtgtggatgtacaagtggtacatgccacataaattagtctatgtatcactactcatt 672  Q
    ||||||||||| ||||||||||||||||||||| |||  | |||||||||||||||||||||    
T  1673427 attgtgtgtgggtgtacaagtggtacatgccacctaagatggtctatgtatcactactcatt 1673366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 598 - 671
Target Start/End: Complemental strand, 1995024 - 1994951
Alignment:
Q  598 gacacatgtcaccattgtgtgtggatgtacaagtggtacatgccacataaattagtctatgtatcactactcat 671  Q
    ||||| |||||  ||||||||||| ||||||||||||||||||||| |||  | ||||||||||||||||||||    
T  1995024 gacacttgtcaaaattgtgtgtgggtgtacaagtggtacatgccacctaaggtggtctatgtatcactactcat 1994951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 611 - 671
Target Start/End: Original strand, 27325752 - 27325812
Alignment:
Q  611 attgtgtgtggatgtacaagtggtacatgccacataaattagtctatgtatcactactcat 671  Q
    ||||||||||| ||||||||||||||||||||| |||  | ||||||||||||||||||||    
T  27325752 attgtgtgtgggtgtacaagtggtacatgccacctaaggtggtctatgtatcactactcat 27325812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 586 - 670
Target Start/End: Original strand, 44797565 - 44797649
Alignment:
Q  586 ggggaccacgtggacacatgtcaccattgtgtgtggatgtacaagtggtacatgccacataaattagtctatgtatcactactca 670  Q
    |||||||||  |||||| | |||  ||||||||||| ||||||||||||||||||||| |||  | |||||||||||||||||||    
T  44797565 ggggaccacaaggacacttatcaaaattgtgtgtgggtgtacaagtggtacatgccacctaaggtggtctatgtatcactactca 44797649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 8382237 - 8382370
Alignment:
Q  1 gtttggtttagggatttgcaatggttgccacatgtttggaagcctttttgcagtgatttgaagaagccactatttgtagtttcactggaaacgtgacttc 100  Q
    ||||||||||| | ||| |||||| |||| || |||| ||||||||||||| |||||| | | |||| |||||  |||| ||||||| |||||||| |||    
T  8382237 gtttggtttagagttttccaatggctgccgcacgttttgaagcctttttgccgtgattcggaaaagctactatacgtagcttcactgcaaacgtgagttc 8382336  T
Q  101 ttgccaaagttttggcctgatgtgaaaatggcac 134  Q
     ||||    ||||||| ||||||| |||||||||    
T  8382337 ctgccgtgattttggcttgatgtggaaatggcac 8382370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 588 - 665
Target Start/End: Original strand, 29637311 - 29637388
Alignment:
Q  588 ggaccacgtggacacatgtcaccattgtgtgtggatgtacaagtggtacatgccacataaattagtctatgtatcact 665  Q
    |||||||  |||||| |||||  ||||||||||| ||||||||||||||||||||| |||  | ||||||||||||||    
T  29637311 ggaccacaaggacacttgtcaaaattgtgtgtgggtgtacaagtggtacatgccacctaagatggtctatgtatcact 29637388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 596 - 669
Target Start/End: Original strand, 49430573 - 49430646
Alignment:
Q  596 tggacacatgtcaccattgtgtgtggatgtacaagtggtacatgccacataaattagtctatgtatcactactc 669  Q
    |||||||||||||| ||||||| | |||||| |||||||||||||||| |||  | ||||||||||||| ||||    
T  49430573 tggacacatgtcacaattgtgtattgatgtataagtggtacatgccacctaaggtggtctatgtatcaccactc 49430646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 31834825 - 31834959
Alignment:
Q  1 gtttggtttagggatttgcaatggttgccacatgtttggaagcctttttgcagtgatttgaagaagccactattt--gtagtttcactggaaacgtgact 98  Q
    ||||||||||| | |||||||||  || |||| |||| ||| ||||| | | |||||||||| |||| ||||| |  |||| |||| ||||||||||| |    
T  31834825 gtttggtttagagttttgcaatgactgacacacgttttgaaacctttgttccgtgatttgaaaaagctactatatatgtagcttcattggaaacgtgagt 31834924  T
Q  99 tcttgccaaagttttggcctgatgtgaaaatggca 133  Q
    ||||| |   |||||| ||||||||||||||||||    
T  31834925 tcttgtcgtggttttgacctgatgtgaaaatggca 31834959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 611 - 669
Target Start/End: Original strand, 2403049 - 2403107
Alignment:
Q  611 attgtgtgtggatgtacaagtggtacatgccacataaattagtctatgtatcactactc 669  Q
    ||||||||||| ||||||||||||||||||||  |||  | ||||||||||||||||||    
T  2403049 attgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatcactactc 2403107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 584 - 666
Target Start/End: Original strand, 15225088 - 15225170
Alignment:
Q  584 gtggggaccacgtggacacatgtcaccattgtgtgtggatgtacaagtggtacatgccacataaattagtctatgtatcacta 666  Q
    |||||||||| ||||||| ||||||| ||||  ||||| |||| |||| ||||||||||| |||  | |||||||||||||||    
T  15225088 gtggggaccatgtggacatatgtcacaattgcatgtgggtgtataagttgtacatgccacctaaggtggtctatgtatcacta 15225170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 588 - 670
Target Start/End: Original strand, 32267566 - 32267648
Alignment:
Q  588 ggaccacgtggacacatgtcaccattgtgtgtggatgtacaagtggtacatgccacataaattagtctatgtatcactactca 670  Q
    |||||||  |||||| |||||  ||||||||||| ||||||| | ||||||||||| |||  | |||||||||||||||||||    
T  32267566 ggaccacaaggacacttgtcaaaattgtgtgtgggtgtacaaattgtacatgccacttaagatggtctatgtatcactactca 32267648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 584 - 638
Target Start/End: Complemental strand, 40314177 - 40314123
Alignment:
Q  584 gtggggaccacgtggacacatgtcaccattgtgtgtggatgtacaagtggtacat 638  Q
    ||||||||||| |||||||||||||| ||||||| |||||||| || ||||||||    
T  40314177 gtggggaccacatggacacatgtcacaattgtgtatggatgtataaatggtacat 40314123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 588 - 669
Target Start/End: Original strand, 40294832 - 40294913
Alignment:
Q  588 ggaccacgtggacacatgtcaccattgtgtgtggatgtacaagtggtacatgccacataaattagtctatgtatcactactc 669  Q
    ||||||| | || ||||||||| ||||||| | | || ||||||||||| |||||| |||| | ||||||||||||||||||    
T  40294832 ggaccacatagatacatgtcacaattgtgtataggtggacaagtggtacgtgccacctaaagtggtctatgtatcactactc 40294913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 584 - 668
Target Start/End: Original strand, 13276561 - 13276645
Alignment:
Q  584 gtggggaccacgtggacacatgtcaccattgtgtgtggatgtacaagtggtacatgccacataaattagtctatgtatcactact 668  Q
    ||||| ||||| |||||||||||||  ||||||| ||  |||| ||||||||||| |||| |||  | |||||||||||||||||    
T  13276561 gtgggtaccacatggacacatgtcataattgtgtatgagtgtataagtggtacataccacctaaggtggtctatgtatcactact 13276645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 589 - 667
Target Start/End: Original strand, 7178213 - 7178291
Alignment:
Q  589 gaccacgtggacacatgtcaccattgtgtgtggatgtacaagtggtacatgccacataaattagtctatgtatcactac 667  Q
    |||||| | ||||| |||||| ||||| ||||| ||||||| ||||||||| ||| |||  | ||||||||||||||||    
T  7178213 gaccacatagacacttgtcacaattgtatgtgggtgtacaaatggtacatgtcacctaaggtggtctatgtatcactac 7178291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 613 - 643
Target Start/End: Original strand, 34311347 - 34311377
Alignment:
Q  613 tgtgtgtggatgtacaagtggtacatgccac 643  Q
    |||||||||||||||||||||||||||||||    
T  34311347 tgtgtgtggatgtacaagtggtacatgccac 34311377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 590 - 635
Target Start/End: Complemental strand, 19989318 - 19989273
Alignment:
Q  590 accacgtggacacatgtcaccattgtgtgtggatgtacaagtggta 635  Q
    ||||| ||||||||||||||  |||| |||||||||||||||||||    
T  19989318 accacatggacacatgtcacacttgtatgtggatgtacaagtggta 19989273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 3e-25; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 584 - 671
Target Start/End: Original strand, 5817477 - 5817564
Alignment:
Q  584 gtggggaccacgtggacacatgtcaccattgtgtgtggatgtacaagtggtacatgccacataaattagtctatgtatcactactcat 671  Q
    ||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||| |||  | ||||||||||||||||||||    
T  5817477 gtggggaccacatggacacatgtcacaattgtgtgtgggtgtacaagtggtacatgccacctaagatggtctatgtatcactactcat 5817564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 584 - 666
Target Start/End: Complemental strand, 51579405 - 51579323
Alignment:
Q  584 gtggggaccacgtggacacatgtcaccattgtgtgtggatgtacaagtggtacatgccacataaattagtctatgtatcacta 666  Q
    ||||| ||||| |||||||||||||| ||||| ||||| ||||||||||||||||||||| |||  | |||||||||||||||    
T  51579405 gtgggaaccacatggacacatgtcacaattgtatgtgggtgtacaagtggtacatgccacctaaggtggtctatgtatcacta 51579323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 584 - 671
Target Start/End: Complemental strand, 20107196 - 20107108
Alignment:
Q  584 gtggggaccacgtggacacatgtcaccattgtgtgtgga-tgtacaagtggtacatgccacataaattagtctatgtatcactactcat 671  Q
    ||||| ||||| |||||||||||||| |||||||| ||  ||||||||||||||||||||| |||  | ||||||||||||||||||||    
T  20107196 gtgggaaccacatggacacatgtcacaattgtgtgcggggtgtacaagtggtacatgccacctaaggtggtctatgtatcactactcat 20107108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 586 - 669
Target Start/End: Original strand, 37605790 - 37605873
Alignment:
Q  586 ggggaccacgtggacacatgtcaccattgtgtgtggatgtacaagtggtacatgccacataaattagtctatgtatcactactc 669  Q
    |||||||||  |||||| |||||  ||||||||||| ||||||||||||||||||||| |||  | ||||||||||||||||||    
T  37605790 ggggaccacaaggacacttgtcaaaattgtgtgtgggtgtacaagtggtacatgccacctaaggtggtctatgtatcactactc 37605873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 586 - 669
Target Start/End: Complemental strand, 55281291 - 55281208
Alignment:
Q  586 ggggaccacgtggacacatgtcaccattgtgtgtggatgtacaagtggtacatgccacataaattagtctatgtatcactactc 669  Q
    |||||||||  |||||| |||||  ||||||||||| ||||||||||||||||||||| |||  | ||||||||||||||||||    
T  55281291 ggggaccacaaggacacttgtcaaaattgtgtgtgggtgtacaagtggtacatgccacctaaggtggtctatgtatcactactc 55281208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 597 - 671
Target Start/End: Complemental strand, 17044075 - 17044001
Alignment:
Q  597 ggacacatgtcaccattgtgtgtggatgtacaagtggtacatgccacataaattagtctatgtatcactactcat 671  Q
    |||||| |||||  ||||||||||| ||||||||||||||||||||| |||  | ||||||||||||||||||||    
T  17044075 ggacacttgtcaaaattgtgtgtgggtgtacaagtggtacatgccacctaaggtggtctatgtatcactactcat 17044001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 584 - 669
Target Start/End: Original strand, 25784005 - 25784090
Alignment:
Q  584 gtggggaccacgtggacacatgtcaccattgtgtgtggatgtacaagtggtacatgccacataaattagtctatgtatcactactc 669  Q
    |||||||| || || | ||||||||| ||| ||||||||||||||||||||||||||||| |||  |  |||||||||||||||||    
T  25784005 gtggggactacatgaatacatgtcacaattatgtgtggatgtacaagtggtacatgccacctaagatgatctatgtatcactactc 25784090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 597 - 668
Target Start/End: Original strand, 25164581 - 25164652
Alignment:
Q  597 ggacacatgtcaccattgtgtgtggatgtacaagtggtacatgccacataaattagtctatgtatcactact 668  Q
    |||||| |||||  ||||||||||| ||||||||||||||||||||| |||  | |||||||||||||||||    
T  25164581 ggacacttgtcaaaattgtgtgtgggtgtacaagtggtacatgccacctaaggtggtctatgtatcactact 25164652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 598 - 669
Target Start/End: Original strand, 32525133 - 32525204
Alignment:
Q  598 gacacatgtcaccattgtgtgtggatgtacaagtggtacatgccacataaattagtctatgtatcactactc 669  Q
    ||||||| |||| |||||||||||||||| |||||||| ||||||| |||  | ||||||||||||||||||    
T  32525133 gacacatatcacaattgtgtgtggatgtataagtggtatatgccacctaagatggtctatgtatcactactc 32525204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 584 - 670
Target Start/End: Original strand, 24059230 - 24059316
Alignment:
Q  584 gtggggaccacgtggacacatgtcaccattgtgtgtggatgtacaagtggtacatgccacataaattagtctatgtatcactactca 670  Q
    ||||| ||||| |||||||||||||| ||||| ||||| ||||||| || |||||||||  |||  | |||||||||||||||||||    
T  24059230 gtgggaaccacatggacacatgtcacaattgtatgtgggtgtacaaatgatacatgccatctaaggtggtctatgtatcactactca 24059316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 587 - 669
Target Start/End: Complemental strand, 43749174 - 43749092
Alignment:
Q  587 gggaccacgtggacacatgtcaccattgtgtgtggatgtacaagtggtacatgccacataaattagtctatgtatcactactc 669  Q
    ||||||||  |||||| |||||  ||| ||||||| ||||||||||||||||||||| |||  | ||||||||||||||||||    
T  43749174 gggaccacaaggacacttgtcaaaattatgtgtgggtgtacaagtggtacatgccacctaaggtggtctatgtatcactactc 43749092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 611 - 669
Target Start/End: Original strand, 45996018 - 45996076
Alignment:
Q  611 attgtgtgtggatgtacaagtggtacatgccacataaattagtctatgtatcactactc 669  Q
    ||||||||||| ||||||||||||||||||||| |||  | ||||||||||||||||||    
T  45996018 attgtgtgtgggtgtacaagtggtacatgccacctaagatggtctatgtatcactactc 45996076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 584 - 669
Target Start/End: Original strand, 42179234 - 42179319
Alignment:
Q  584 gtggggaccacgtggacacatgtcaccattgtgtgtggatgtacaagtggtacatgccacataaattagtctatgtatcactactc 669  Q
    ||||||||||| |||||||||||||| ||||||  ||| |||| ||||||||||| |||| |||  | |||||||||||| |||||    
T  42179234 gtggggaccacatggacacatgtcacaattgtgcatgggtgtataagtggtacataccacctaaggtggtctatgtatcattactc 42179319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 584 - 669
Target Start/End: Complemental strand, 50498295 - 50498210
Alignment:
Q  584 gtggggaccacgtggacacatgtcaccattgtgtgtggatgtacaagtggtacatgccacataaattagtctatgtatcactactc 669  Q
    ||||||||||| |||||||||||||| ||||||| ||| |||| ||||||||||| | || |||  |  |||||||||||||||||    
T  50498295 gtggggaccacatggacacatgtcacaattgtgtatgggtgtataagtggtacatactacctaaggtgatctatgtatcactactc 50498210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 599 - 667
Target Start/End: Complemental strand, 48525396 - 48525328
Alignment:
Q  599 acacatgtcaccattgtgtgtggatgtacaagtggtacatgccacataaattagtctatgtatcactac 667  Q
    ||||||||||| ||| | ||||||||||||||||||| ||||||| |||| | || |||||||||||||    
T  48525396 acacatgtcacaattatatgtggatgtacaagtggtatatgccacctaaagtggtttatgtatcactac 48525328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 623 - 674
Target Start/End: Original strand, 39631274 - 39631325
Alignment:
Q  623 tgtacaagtggtacatgccacataaattagtctatgtatcactactcattaa 674  Q
    ||||||||||||||||||||| |||  | |||||||||||||||||||||||    
T  39631274 tgtacaagtggtacatgccacctaaggtggtctatgtatcactactcattaa 39631325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 586 - 672
Target Start/End: Original strand, 22364560 - 22364646
Alignment:
Q  586 ggggaccacgtggacacatgtcaccattgtgtgtggatgtacaagtggtacatgccacataaattagtctatgtatcactactcatt 672  Q
    ||||||||| ||||||||| |||| ||||| | ||| |||| |||||||| ||||||| ||| ||  | ||||||||||||||||||    
T  22364560 ggggaccacatggacacatatcacaattgtatatgggtgtataagtggtatatgccacctaagttgatttatgtatcactactcatt 22364646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 596 - 670
Target Start/End: Complemental strand, 51579653 - 51579580
Alignment:
Q  596 tggacacatgtcaccattgtgtgtggatgtacaagtggtacatgccacataaattagtctatgtatcactactca 670  Q
    |||||||||||||| ||||| | ||| ||||||||||||||||||||| |||  | |||| ||||||||||||||    
T  51579653 tggacacatgtcacaattgtatttgggtgtacaagtggtacatgccacctaaggtggtct-tgtatcactactca 51579580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 604 - 668
Target Start/End: Complemental strand, 32290279 - 32290215
Alignment:
Q  604 tgtcaccattgtgtgtggatgtacaagtggtacatgccacataaattagtctatgtatcactact 668  Q
    |||||| ||||||| ||| |||| |||||||||||||||| |||  | |||||||||||||||||    
T  32290279 tgtcacaattgtgtatgggtgtataagtggtacatgccacctaagatggtctatgtatcactact 32290215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 584 - 664
Target Start/End: Complemental strand, 41277300 - 41277220
Alignment:
Q  584 gtggggaccacgtggacacatgtcaccattgtgtgtggatgtacaagtggtacatgccacataaattagtctatgtatcac 664  Q
    ||||||||||| || ||||||||||| ||||| ||||| |||||| |||||||||| ||| |||  |  ||||||||||||    
T  41277300 gtggggaccacatgaacacatgtcacaattgtatgtgggtgtacaggtggtacatgtcacctaaggtgatctatgtatcac 41277220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 596 - 665
Target Start/End: Complemental strand, 36851300 - 36851231
Alignment:
Q  596 tggacacatgtcaccattgtgtgtggatgtacaagtggtacatgccacataaattagtctatgtatcact 665  Q
    |||||||||||||| ||  || |||| ||||||||||||||||||||| |||  | ||||||| ||||||    
T  36851300 tggacacatgtcacaatcatgcgtgggtgtacaagtggtacatgccacttaaggtggtctatgcatcact 36851231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 5e-21; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 585 - 661
Target Start/End: Original strand, 8368469 - 8368545
Alignment:
Q  585 tggggaccacgtggacacatgtcaccattgtgtgtggatgtacaagtggtacatgccacataaattagtctatgtat 661  Q
    ||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| |||  | ||||||||||    
T  8368469 tggggaccacgtggacacatgtcacaattgtgtgtgggtgtacaagtggtacatgccacctaaggtggtctatgtat 8368545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 584 - 672
Target Start/End: Original strand, 45413635 - 45413723
Alignment:
Q  584 gtggggaccacgtggacacatgtcaccattgtgtgtggatgtacaagtggtacatgccacataaattagtctatgtatcactactcatt 672  Q
    ||||||||||  |||||||||||||| ||||||| |||||||| |||||||||||||||| |||  | |||||||||||||||||||||    
T  45413635 gtggggaccatatggacacatgtcacaattgtgtatggatgtataagtggtacatgccacctaaggtggtctatgtatcactactcatt 45413723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 584 - 673
Target Start/End: Complemental strand, 28898080 - 28897991
Alignment:
Q  584 gtggggaccacgtggacacatgtcaccattgtgtgtggatgtacaagtggtacatgccacataaattagtctatgtatcactactcatta 673  Q
    ||||||||||| |||||||||||||| ||||||| ||| |||| |||||||| ||||||| |||  | ||||||||||||||||||||||    
T  28898080 gtggggaccacatggacacatgtcacaattgtgtatgggtgtataagtggtatatgccacctaaggtggtctatgtatcactactcatta 28897991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 586 - 668
Target Start/End: Original strand, 43066003 - 43066085
Alignment:
Q  586 ggggaccacgtggacacatgtcaccattgtgtgtggatgtacaagtggtacatgccacataaattagtctatgtatcactact 668  Q
    |||||||||  |||||| |||||  ||||||||||||||||||||||||||||||||| |||  | |||||||||||||||||    
T  43066003 ggggaccacaaggacacttgtcaaaattgtgtgtggatgtacaagtggtacatgccacctaaggtggtctatgtatcactact 43066085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 584 - 669
Target Start/End: Complemental strand, 2599616 - 2599531
Alignment:
Q  584 gtggggaccacgtggacacatgtcaccattgtgtgtggatgtacaagtggtacatgccacataaattagtctatgtatcactactc 669  Q
    ||||||||||| || ||||||||||| ||||||| ||| |||| |||||||||||||||| |||  | ||||||||||||||||||    
T  2599616 gtggggaccacatgaacacatgtcacaattgtgtatgggtgtataagtggtacatgccacctaaggtggtctatgtatcactactc 2599531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 584 - 664
Target Start/End: Original strand, 41075694 - 41075774
Alignment:
Q  584 gtggggaccacgtggacacatgtcaccattgtgtgtggatgtacaagtggtacatgccacataaattagtctatgtatcac 664  Q
    ||||||||||| || ||||||||||| ||||| ||||| ||||||||||||||||| ||| |||  | |||||||||||||    
T  41075694 gtggggaccacatgaacacatgtcacaattgtatgtgggtgtacaagtggtacatgtcacctaaggtggtctatgtatcac 41075774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 590 - 668
Target Start/End: Complemental strand, 27497251 - 27497174
Alignment:
Q  590 accacgtggacacatgtcaccattgtgtgtggatgtacaagtggtacatgccacataaattagtctatgtatcactact 668  Q
    ||||| || ||||||||| | ||||| ||||||||||||||||||||||||||| |||| | |||| ||||||||||||    
T  27497251 accacatgaacacatgtcgcaattgtctgtggatgtacaagtggtacatgccacctaaagtggtct-tgtatcactact 27497174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 597 - 670
Target Start/End: Original strand, 1993750 - 1993823
Alignment:
Q  597 ggacacatgtcaccattgtgtgtggatgtacaagtggtacatgccacataaattagtctatgtatcactactca 670  Q
    |||||| |||||  ||||||||||| |||||||||| |||||||||| |||  | |||||||||||||||||||    
T  1993750 ggacacttgtcaaaattgtgtgtgggtgtacaagtgatacatgccacctaaggtggtctatgtatcactactca 1993823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 584 - 669
Target Start/End: Original strand, 10391402 - 10391487
Alignment:
Q  584 gtggggaccacgtggacacatgtcaccattgtgtgtggatgtacaagtggtacatgccacataaattagtctatgtatcactactc 669  Q
    ||||||||||| |||||||||||||| ||||||| ||| |||| |||||| ||||||||| |||  |  ||||||||||| |||||    
T  10391402 gtggggaccacatggacacatgtcacaattgtgtatgggtgtataagtggcacatgccacctaagatgatctatgtatcattactc 10391487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 587 - 667
Target Start/End: Complemental strand, 11904935 - 11904855
Alignment:
Q  587 gggaccacgtggacacatgtcaccattgtgtgtggatgtacaagtggtacatgccacataaattagtctatgtatcactac 667  Q
    |||||||| |||||||||||||| ||| | ||||| ||||||||||||| ||||||| |||  | || |||||||||||||    
T  11904935 gggaccacatggacacatgtcacaattatatgtgggtgtacaagtggtatatgccacctaaggtggtttatgtatcactac 11904855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 584 - 664
Target Start/End: Complemental strand, 31774809 - 31774729
Alignment:
Q  584 gtggggaccacgtggacacatgtcaccattgtgtgtggatgtacaagtggtacatgccacataaattagtctatgtatcac 664  Q
    ||||||||||| || ||||||||||| ||||| ||||  ||||||||||||||||| ||| |||  | |||||||||||||    
T  31774809 gtggggaccacatgaacacatgtcacaattgtatgtgagtgtacaagtggtacatgtcacctaaggtggtctatgtatcac 31774729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 611 - 669
Target Start/End: Original strand, 14342313 - 14342371
Alignment:
Q  611 attgtgtgtggatgtacaagtggtacatgccacataaattagtctatgtatcactactc 669  Q
    ||||||||||| |||| |||||||||||||||| |||  | ||||||||||||||||||    
T  14342313 attgtgtgtgggtgtataagtggtacatgccacctaaggtggtctatgtatcactactc 14342371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 589 - 641
Target Start/End: Original strand, 16465714 - 16465766
Alignment:
Q  589 gaccacgtggacacatgtcaccattgtgtgtggatgtacaagtggtacatgcc 641  Q
    |||||||| |||||||||||| ||||| ||||| | |||||||||||||||||    
T  16465714 gaccacgtagacacatgtcacaattgtatgtgggtatacaagtggtacatgcc 16465766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 131
Target Start/End: Original strand, 42351740 - 42351823
Alignment:
Q  48 ttgcagtgatttgaagaagccactatttgtagtttcactggaaacgtgacttcttgccaaagttttggcctgatgtgaaaatgg 131  Q
    |||| |||||||||| |||| ||||| ||||| ||||||| |||||||| ||| ||||    ||||||| ||||||||||||||    
T  42351740 ttgccgtgatttgaaaaagcaactatatgtagcttcactgcaaacgtgaattcctgccgtgattttggcttgatgtgaaaatgg 42351823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 537 - 575
Target Start/End: Original strand, 5749069 - 5749107
Alignment:
Q  537 tataccaccccatgtgagcgtgtgtgagagacaaaaaat 575  Q
    |||||||||||||||||| ||||||||||||||| ||||    
T  5749069 tataccaccccatgtgagagtgtgtgagagacaataaat 5749107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 589 - 643
Target Start/End: Complemental strand, 45502742 - 45502688
Alignment:
Q  589 gaccacgtggacacatgtcaccattgtgtgtggatgtacaagtggtacatgccac 643  Q
    |||||| |||||||||||||| ||||| | || ||||||||||||||||| ||||    
T  45502742 gaccacatggacacatgtcacaattgtatatgaatgtacaagtggtacataccac 45502688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 612 - 669
Target Start/End: Original strand, 4077086 - 4077143
Alignment:
Q  612 ttgtgtgtggatgtacaagtggtacatgccacataaattagtctatgtatcactactc 669  Q
    |||||||||| | ||||||||||||||||||| |||  | |||||| |||||||||||    
T  4077086 ttgtgtgtgggtatacaagtggtacatgccacctaaggtggtctatatatcactactc 4077143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 1e-18; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 584 - 668
Target Start/End: Complemental strand, 23004841 - 23004757
Alignment:
Q  584 gtggggaccacgtggacacatgtcaccattgtgtgtggatgtacaagtggtacatgccacataaattagtctatgtatcactact 668  Q
    ||||||||||| || | ||||||||| ||||||||||| ||||||||||||||||||||| |||  | |||||||||||||||||    
T  23004841 gtggggaccacatgaatacatgtcacaattgtgtgtgggtgtacaagtggtacatgccacctaaggtggtctatgtatcactact 23004757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 585 - 669
Target Start/End: Original strand, 8330690 - 8330774
Alignment:
Q  585 tggggaccacgtggacacatgtcaccattgtgtgtggatgtacaagtggtacatgccacataaattagtctatgtatcactactc 669  Q
    |||||||||| |||||| || |||| |||||||||| |||||||||||||||||||||  |||  | ||||||||||||||||||    
T  8330690 tggggaccacatggacatatatcacaattgtgtgtgaatgtacaagtggtacatgccatctaaggtggtctatgtatcactactc 8330774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 586 - 669
Target Start/End: Complemental strand, 50989286 - 50989203
Alignment:
Q  586 ggggaccacgtggacacatgtcaccattgtgtgtggatgtacaagtggtacatgccacataaattagtctatgtatcactactc 669  Q
    |||||||||  |||||| |||||  ||||||||||| ||||||||||||||||||||| |||  | ||||||||||||||||||    
T  50989286 ggggaccacaaggacacttgtcaaaattgtgtgtgggtgtacaagtggtacatgccacctaaggtggtctatgtatcactactc 50989203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 586 - 669
Target Start/End: Complemental strand, 51092418 - 51092335
Alignment:
Q  586 ggggaccacgtggacacatgtcaccattgtgtgtggatgtacaagtggtacatgccacataaattagtctatgtatcactactc 669  Q
    |||||||||  |||||| |||||  ||||||||||| ||||||||||||||||||||| |||  | ||||||||||||||||||    
T  51092418 ggggaccacaaggacacttgtcaaaattgtgtgtgggtgtacaagtggtacatgccacctaaggtggtctatgtatcactactc 51092335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 588 - 665
Target Start/End: Complemental strand, 33288213 - 33288136
Alignment:
Q  588 ggaccacgtggacacatgtcaccattgtgtgtggatgtacaagtggtacatgccacataaattagtctatgtatcact 665  Q
    ||||||| | ||||||| |||| ||||||||||| |||||||||||||||| |||| |||  | ||||||||||||||    
T  33288213 ggaccacatagacacatatcacaattgtgtgtgggtgtacaagtggtacataccacctaaggtggtctatgtatcact 33288136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 597 - 666
Target Start/End: Complemental strand, 38247870 - 38247801
Alignment:
Q  597 ggacacatgtcaccattgtgtgtggatgtacaagtggtacatgccacataaattagtctatgtatcacta 666  Q
    |||||| |||||  ||||||||||| ||||||||||||||||||||| |||  | |||||||||||||||    
T  38247870 ggacacttgtcaaaattgtgtgtgggtgtacaagtggtacatgccacctaaggtggtctatgtatcacta 38247801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 587 - 674
Target Start/End: Complemental strand, 9271192 - 9271105
Alignment:
Q  587 gggaccacgtggacacatgtcaccattgtgtgtggatgtacaagtggtacatgccacataaattagtctatgtatcactactcattaa 674  Q
    ||||||||  |||||| |||||  ||| ||||||| ||||||||||||||||||||  |||  | |||||||||||||||||| ||||    
T  9271192 gggaccacaaggacacttgtcaaaattatgtgtgggtgtacaagtggtacatgccatctaaggtggtctatgtatcactactctttaa 9271105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 586 - 668
Target Start/End: Original strand, 12224102 - 12224184
Alignment:
Q  586 ggggaccacgtggacacatgtcaccattgtgtgtggatgtacaagtggtacatgccacataaattagtctatgtatcactact 668  Q
    |||||||||  |||||| |||||  ||||||||||| ||||||| ||||||||||||| |||  | || ||||||||||||||    
T  12224102 ggggaccacaaggacacttgtcaaaattgtgtgtgggtgtacaaatggtacatgccacctaaggtggtttatgtatcactact 12224184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 596 - 661
Target Start/End: Complemental strand, 54713597 - 54713532
Alignment:
Q  596 tggacacatgtcaccattgtgtgtggatgtacaagtggtacatgccacataaattagtctatgtat 661  Q
    |||||||||||||  ||| ||||||||||| ||||||||||||||||| |||  | ||||||||||    
T  54713597 tggacacatgtcataattatgtgtggatgttcaagtggtacatgccacctaacgtggtctatgtat 54713532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 618 - 669
Target Start/End: Original strand, 29915090 - 29915141
Alignment:
Q  618 gtggatgtacaagtggtacatgccacataaattagtctatgtatcactactc 669  Q
    |||| ||||||||||||| |||||||||||  | ||||||||||||||||||    
T  29915090 gtgggtgtacaagtggtatatgccacataaggtggtctatgtatcactactc 29915141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 618 - 669
Target Start/End: Original strand, 29964243 - 29964294
Alignment:
Q  618 gtggatgtacaagtggtacatgccacataaattagtctatgtatcactactc 669  Q
    |||| ||||||||||||| |||||||||||  | ||||||||||||||||||    
T  29964243 gtgggtgtacaagtggtatatgccacataaggtggtctatgtatcactactc 29964294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 586 - 672
Target Start/End: Original strand, 48034908 - 48034994
Alignment:
Q  586 ggggaccacgtggacacatgtcaccattgtgtgtggatgtacaagtggtacatgccacataaattagtctatgtatcactactcatt 672  Q
    |||||||||  |||||| |||||  ||||| ||||| ||||||||||||||||| ||| |||  | || |||||||||| |||||||    
T  48034908 ggggaccacaaggacacttgtcaaaattgtatgtgggtgtacaagtggtacatgtcacctaaggtggtttatgtatcaccactcatt 48034994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 8e-17; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 586 - 663
Target Start/End: Complemental strand, 29429667 - 29429590
Alignment:
Q  586 ggggaccacgtggacacatgtcaccattgtgtgtggatgtacaagtggtacatgccacataaattagtctatgtatca 663  Q
    |||||||| ||||||||||||||| ||||| ||||| ||||||||||||||||||||| |||  |||||| |||||||    
T  29429667 ggggaccatgtggacacatgtcacaattgtatgtgggtgtacaagtggtacatgccacctaaggtagtctgtgtatca 29429590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 597 - 672
Target Start/End: Original strand, 14314096 - 14314171
Alignment:
Q  597 ggacacatgtcaccattgtgtgtggatgtacaagtggtacatgccacataaattagtctatgtatcactactcatt 672  Q
    |||||| |||||  ||||||||||| ||||||||||||||||||||| |||  | |||||||||||||||||||||    
T  14314096 ggacacttgtcaaaattgtgtgtgggtgtacaagtggtacatgccacctaaggtggtctatgtatcactactcatt 14314171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 584 - 669
Target Start/End: Complemental strand, 23916057 - 23915972
Alignment:
Q  584 gtggggaccacgtggacacatgtcaccattgtgtgtggatgtacaagtggtacatgccacataaattagtctatgtatcactactc 669  Q
    ||||||||||| |||||||||||||| ||||||| ||| |||| |||||||||||||||  |||  |  |||||||||||||||||    
T  23916057 gtggggaccacatggacacatgtcacaattgtgtatgggtgtataagtggtacatgccatctaaggtgatctatgtatcactactc 23915972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 586 - 666
Target Start/End: Original strand, 1244655 - 1244735
Alignment:
Q  586 ggggaccacgtggacacatgtcaccattgtgtgtggatgtacaagtggtacatgccacataaattagtctatgtatcacta 666  Q
    |||||||||  |||||| || ||  ||||||||||||||||||||||||||||||||| |||  | |||||||||||||||    
T  1244655 ggggaccacaaggacacttgccaaaattgtgtgtggatgtacaagtggtacatgccacttaaggtggtctatgtatcacta 1244735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 611 - 669
Target Start/End: Complemental strand, 9045891 - 9045833
Alignment:
Q  611 attgtgtgtggatgtacaagtggtacatgccacataaattagtctatgtatcactactc 669  Q
    ||||||||||| |||||||||| |||||||||| |||  | ||||||||||||||||||    
T  9045891 attgtgtgtgggtgtacaagtgatacatgccacctaaggtggtctatgtatcactactc 9045833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 617 - 669
Target Start/End: Original strand, 34792781 - 34792833
Alignment:
Q  617 tgtggatgtacaagtggtacatgccacataaattagtctatgtatcactactc 669  Q
    ||||| ||||||||||||||||||||| |||  | ||||||||||||||||||    
T  34792781 tgtgggtgtacaagtggtacatgccacctaaggtggtctatgtatcactactc 34792833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 613 - 671
Target Start/End: Original strand, 9521943 - 9522001
Alignment:
Q  613 tgtgtgtggatgtacaagtggtacatgccacataaattagtctatgtatcactactcat 671  Q
    ||||||||| ||||||||||||||||||||| |||  |  ||||||||| |||||||||    
T  9521943 tgtgtgtgggtgtacaagtggtacatgccacctaaggtgatctatgtattactactcat 9522001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 590 - 663
Target Start/End: Complemental strand, 12748290 - 12748217
Alignment:
Q  590 accacgtggacacatgtcaccattgtgtgtggatgtacaagtggtacatgccacataaattagtctatgtatca 663  Q
    ||||| |||||| ||||||| ||| | ||||| ||||||||||||| ||||||| |||| | || |||||||||    
T  12748290 accacatggacagatgtcacaattatatgtgggtgtacaagtggtatatgccacctaaagtggtttatgtatca 12748217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 8e-17; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 596 - 669
Target Start/End: Original strand, 4434699 - 4434772
Alignment:
Q  596 tggacacatgtcaccattgtgtgtggatgtacaagtggtacatgccacataaattagtctatgtatcactactc 669  Q
    |||||||||||||| || ||||||||| ||||||||||||||||||||||||  | |||||| |||||||||||    
T  4434699 tggacacatgtcacaatagtgtgtggaagtacaagtggtacatgccacataaggtggtctatatatcactactc 4434772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 587 - 669
Target Start/End: Original strand, 32599348 - 32599430
Alignment:
Q  587 gggaccacgtggacacatgtcaccattgtgtgtggatgtacaagtggtacatgccacataaattagtctatgtatcactactc 669  Q
    ||||||||  |||||| |||||  ||| ||||||||||||||||||||||||||||| |||  | ||||||||||||||||||    
T  32599348 gggaccacaaggacacttgtcaaaattatgtgtggatgtacaagtggtacatgccacctaaggtggtctatgtatcactactc 32599430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 584 - 669
Target Start/End: Complemental strand, 3121695 - 3121610
Alignment:
Q  584 gtggggaccacgtggacacatgtcaccattgtgtgtggatgtacaagtggtacatgccacataaattagtctatgtatcactactc 669  Q
    ||||||||||| |||||||||||||| ||||||| ||  |||| |||||||||||||||  |||  | ||||||||||||||||||    
T  3121695 gtggggaccacatggacacatgtcacaattgtgtatgagtgtataagtggtacatgccatctaaggtggtctatgtatcactactc 3121610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 597 - 668
Target Start/End: Original strand, 13697075 - 13697146
Alignment:
Q  597 ggacacatgtcaccattgtgtgtggatgtacaagtggtacatgccacataaattagtctatgtatcactact 668  Q
    |||||| |||||  ||||||||||| ||||||||||||||||||||| |||  | |||||||||||||||||    
T  13697075 ggacacttgtcaaaattgtgtgtgggtgtacaagtggtacatgccacctaaggtggtctatgtatcactact 13697146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 599 - 670
Target Start/End: Original strand, 14945848 - 14945919
Alignment:
Q  599 acacatgtcaccattgtgtgtggatgtacaagtggtacatgccacataaattagtctatgtatcactactca 670  Q
    |||||||| ||  |||||||||| ||||||||||||||||||||| |||  | |||||||||||||||||||    
T  14945848 acacatgttacatttgtgtgtgggtgtacaagtggtacatgccacctaaggtggtctatgtatcactactca 14945919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 584 - 666
Target Start/End: Original strand, 36272758 - 36272840
Alignment:
Q  584 gtggggaccacgtggacacatgtcaccattgtgtgtggatgtacaagtggtacatgccacataaattagtctatgtatcacta 666  Q
    |||||||||||  |||||| |||||  ||||||||||| |||| |||||||||||||||| |||  | |||||||||||||||    
T  36272758 gtggggaccacaaggacacttgtcaaaattgtgtgtgggtgtataagtggtacatgccacctaaggtggtctatgtatcacta 36272840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 584 - 669
Target Start/End: Complemental strand, 33300064 - 33299979
Alignment:
Q  584 gtggggaccacgtggacacatgtcaccattgtgtgtggatgtacaagtggtacatgccacataaattagtctatgtatcactactc 669  Q
    ||||||||||| || ||||||||||| ||||| | ||| |||| || ||||||||||||| |||  | ||||||||||||||||||    
T  33300064 gtggggaccacatgaacacatgtcacaattgtatatgggtgtataaatggtacatgccacttaaggtggtctatgtatcactactc 33299979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 584 - 671
Target Start/End: Complemental strand, 5563021 - 5562934
Alignment:
Q  584 gtggggaccacgtggacacatgtcaccattgtgtgtggatgtacaagtggtacatgccacataaattagtctatgtatcactactcat 671  Q
    |||| |||||| | |||||||||||  ||| | | || ||||| || ||||||||||||| |||| ||||||||||||||||||||||    
T  5563021 gtggagaccacatcgacacatgtcaaaattatatatgaatgtataaatggtacatgccacctaaaatagtctatgtatcactactcat 5562934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 586 - 668
Target Start/End: Original strand, 42061330 - 42061412
Alignment:
Q  586 ggggaccacgtggacacatgtcaccattgtgtgtggatgtacaagtggtacatgccacataaattagtctatgtatcactact 668  Q
    |||||||||  |||||| |||||  ||||| ||||| |||||||||||||||||||||  ||| |  ||||||||||||||||    
T  42061330 ggggaccacaaggacacttgtcaaaattgtatgtgggtgtacaagtggtacatgccacccaaagtgctctatgtatcactact 42061412  T

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Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 584 - 669
Target Start/End: Original strand, 24475798 - 24475883
Alignment:
Q  584 gtggggaccacgtggacacatgtcaccattgtgtgtggatgtacaagtggtacatgccacataaattagtctatgtatcactactc 669  Q
    |||||||| || |||||||||||||| ||||||| ||| |||| ||||| ||||| |||| |||  | |||||||||||| |||||    
T  24475798 gtggggactacatggacacatgtcacaattgtgtatgggtgtataagtgatacataccacctaaggtggtctatgtatcattactc 24475883  T

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Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 598 - 670
Target Start/End: Complemental strand, 40095334 - 40095262
Alignment:
Q  598 gacacatgtcaccattgtgtgtggatgtacaagtggtacatgccacataaattagtctatgtatcactactca 670  Q
    ||||| |||||  ||||| ||||||||||||||||||||||| ||  |||  | |||||||||||||||||||    
T  40095334 gacacttgtcaaaattgtatgtggatgtacaagtggtacatgtcatctaaggtggtctatgtatcactactca 40095262  T

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Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 611 - 669
Target Start/End: Original strand, 14242639 - 14242697
Alignment:
Q  611 attgtgtgtggatgtacaagtggtacatgccacataaattagtctatgtatcactactc 669  Q
    ||||||||||| |||||| ||||||||| |||| |||  | ||||||||||||||||||    
T  14242639 attgtgtgtgggtgtacaggtggtacataccacctaagatggtctatgtatcactactc 14242697  T

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Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 599 - 640
Target Start/End: Complemental strand, 25333214 - 25333173
Alignment:
Q  599 acacatgtcaccattgtgtgtggatgtacaagtggtacatgc 640  Q
    ||||||||||| | ||||||| ||||||||||||||||||||    
T  25333214 acacatgtcacaaatgtgtgttgatgtacaagtggtacatgc 25333173  T

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Target: chr5 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 586 - 669
Target Start/End: Complemental strand, 13988330 - 13988247
Alignment:
Q  586 ggggaccacgtggacacatgtcaccattgtgtgtggatgtacaagtggtacatgccacataaattagtctatgtatcactactc 669  Q
    |||||||||  |||||| |||||  ||||||||||| ||||||||||||||||||||| |||  | ||||||||||||||||||    
T  13988330 ggggaccacaaggacacttgtcaaaattgtgtgtgggtgtacaagtggtacatgccacctaaggtggtctatgtatcactactc 13988247  T

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Target: chr5; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 586 - 669
Target Start/End: Complemental strand, 36890460 - 36890377
Alignment:
Q  586 ggggaccacgtggacacatgtcaccattgtgtgtggatgtacaagtggtacatgccacataaattagtctatgtatcactactc 669  Q
    |||||||||  |||||| |||||  ||||||||||| ||||||||||||||||||||| |||  | ||||||||||||||||||    
T  36890460 ggggaccacaaggacacttgtcaaaattgtgtgtgggtgtacaagtggtacatgccacctaaggtggtctatgtatcactactc 36890377  T

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Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 584 - 669
Target Start/End: Complemental strand, 15285414 - 15285329
Alignment:
Q  584 gtggggaccacgtggacacatgtcaccattgtgtgtggatgtacaagtggtacatgccacataaattagtctatgtatcactactc 669  Q
    ||||||||||| |||||||||||||| ||||||| ||  |||| |||||||||||||||  |||  | ||||||||||||||||||    
T  15285414 gtggggaccacatggacacatgtcacaattgtgtatgagtgtataagtggtacatgccatctaaggtggtctatgtatcactactc 15285329  T

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Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 587 - 643
Target Start/End: Complemental strand, 12248355 - 12248299
Alignment:
Q  587 gggaccacgtggacacatgtcaccattgtgtgtggatgtacaagtggtacatgccac 643  Q
    |||||||| |||||||||||||| ||| | ||||||||||||||||||| |||||||    
T  12248355 gggaccacatggacacatgtcacaattatatgtggatgtacaagtggtatatgccac 12248299  T

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Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 611 - 670
Target Start/End: Complemental strand, 11247250 - 11247191
Alignment:
Q  611 attgtgtgtggatgtacaagtggtacatgccacataaattagtctatgtatcactactca 670  Q
    ||||||||||||||||||||| ||| ||||||  |||  |||||||||||||||||||||    
T  11247250 attgtgtgtggatgtacaagtagtatatgccatctaaggtagtctatgtatcactactca 11247191  T

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Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 596 - 666
Target Start/End: Original strand, 1447856 - 1447926
Alignment:
Q  596 tggacacatgtcaccattgtgtgtggatgtacaagtggtacatgccacataaattagtctatgtatcacta 666  Q
    |||||| ||||||| |||||| ||||||||| |||||||||||||||| |||| | |||||| ||| ||||    
T  1447856 tggacatatgtcacaattgtgcgtggatgtataagtggtacatgccacctaaagttgtctatatataacta 1447926  T

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Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 537 - 575
Target Start/End: Complemental strand, 20151516 - 20151478
Alignment:
Q  537 tataccaccccatgtgagcgtgtgtgagagacaaaaaat 575  Q
    |||||||||||||||||| ||||||||||||||| ||||    
T  20151516 tataccaccccatgtgagagtgtgtgagagacaataaat 20151478  T

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Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 589 - 667
Target Start/End: Original strand, 43100310 - 43100388
Alignment:
Q  589 gaccacgtggacacatgtcaccattgtgtgtggatgtacaagtggtacatgccacataaattagtctatgtatcactac 667  Q
    |||||| |||||||||||||| ||| | ||||| ||||||||||||| || |||| |||  | || |||||||||||||    
T  43100310 gaccacatggacacatgtcacaattatatgtgggtgtacaagtggtatataccacctaagatggtttatgtatcactac 43100388  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 584 - 671
Target Start/End: Complemental strand, 31741128 - 31741041
Alignment:
Q  584 gtggggaccacgtggacacatgtcaccattgtgtgtggatgtacaagtggtacatgccacataaattagtctatgtatcactactcat 671  Q
    ||||||| ||| | |||||||||||| ||||||| ||| |||| |||||||||||||||| |||  | |||||||||||| |||||||    
T  31741128 gtggggagcacatagacacatgtcacaattgtgtatgggtgtataagtggtacatgccacctaaggtggtctatgtatcattactcat 31741041  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 611 - 670
Target Start/End: Original strand, 46576366 - 46576425
Alignment:
Q  611 attgtgtgtggatgtacaagtggtacatgccacataaattagtctatgtatcactactca 670  Q
    ||||||||||| ||||||||||||||||||||| |||  | |||||||||||||||||||    
T  46576366 attgtgtgtgggtgtacaagtggtacatgccacctaaggtggtctatgtatcactactca 46576425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 597 - 670
Target Start/End: Complemental strand, 48460731 - 48460658
Alignment:
Q  597 ggacacatgtcaccattgtgtgtggatgtacaagtggtacatgccacataaattagtctatgtatcactactca 670  Q
    |||||| |||||  ||||| ||||||||||||| ||||||||||||| |||  | |||||||||||||||||||    
T  48460731 ggacacttgtcaaaattgtatgtggatgtacaaatggtacatgccacctaaggtggtctatgtatcactactca 48460658  T

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Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 588 - 640
Target Start/End: Complemental strand, 43359053 - 43359001
Alignment:
Q  588 ggaccacgtggacacatgtcaccattgtgtgtggatgtacaagtggtacatgc 640  Q
    ||||||||||||||| |||||| |||||| |||||||||||||| ||||||||    
T  43359053 ggaccacgtggacacgtgtcacaattgtgagtggatgtacaagtagtacatgc 43359001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 584 - 671
Target Start/End: Original strand, 38754992 - 38755079
Alignment:
Q  584 gtggggaccacgtggacacatgtcaccattgtgtgtggatgtacaagtggtacatgccacataaattagtctatgtatcactactcat 671  Q
    ||||||| ||| |||||||||||||  ||| ||| ||| ||| ||||||||||||||||| |||  | |||||||||||| |||||||    
T  38754992 gtggggatcacatggacacatgtcataattatgtatgggtgttcaagtggtacatgccacctaaggtggtctatgtatcattactcat 38755079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 584 - 667
Target Start/End: Original strand, 42974475 - 42974558
Alignment:
Q  584 gtggggaccacgtggacacatgtcaccattgtgtgtggatgtacaagtggtacatgccacataaattagtctatgtatcactac 667  Q
    ||||||||||  || ||||||||||| ||||| ||||| |||| |||||||||||||||| |||  | || |||||||||||||    
T  42974475 gtggggaccatatgaacacatgtcacaattgtatgtgggtgtataagtggtacatgccacctaaggtggtttatgtatcactac 42974558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 584 - 662
Target Start/End: Complemental strand, 11752682 - 11752604
Alignment:
Q  584 gtggggaccacgtggacacatgtcaccattgtgtgtggatgtacaagtggtacatgccacataaattagtctatgtatc 662  Q
    |||||||||||||| ||||||||||| ||| | ||| | |||||||||| |||||||||| |||  | |||||||||||    
T  11752682 gtggggaccacgtgaacacatgtcacaattatatgtaggtgtacaagtgatacatgccacctaaggtggtctatgtatc 11752604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 587 - 667
Target Start/End: Complemental strand, 28713759 - 28713679
Alignment:
Q  587 gggaccacgtggacacatgtcaccattgtgtgtggatgtacaagtggtacatgccacataaattagtctatgtatcactac 667  Q
    |||| ||| |||||||||||||| ||| | ||||| ||||||||||||| ||||||| |||  | || |||||||||||||    
T  28713759 gggaacacatggacacatgtcacaattatatgtgggtgtacaagtggtatatgccacctaaggtggtttatgtatcactac 28713679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 587 - 667
Target Start/End: Original strand, 38349559 - 38349639
Alignment:
Q  587 gggaccacgtggacacatgtcaccattgtgtgtggatgtacaagtggtacatgccacataaattagtctatgtatcactac 667  Q
    |||| ||| |||||||||||||| ||| | ||||| ||||||||||||| ||||||| |||  | || |||||||||||||    
T  38349559 gggaacacatggacacatgtcacaattatatgtgggtgtacaagtggtatatgccacctaagatggtttatgtatcactac 38349639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 537 - 575
Target Start/End: Original strand, 38754937 - 38754975
Alignment:
Q  537 tataccaccccatgtgagcgtgtgtgagagacaaaaaat 575  Q
    |||||||||||||||||| ||||||||||||||| ||||    
T  38754937 tataccaccccatgtgagagtgtgtgagagacaataaat 38754975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 525 - 570
Target Start/End: Complemental strand, 33496653 - 33496608
Alignment:
Q  525 ccatatacacaatataccaccccatgtgagcgtgtgtgagagacaa 570  Q
    ||||| ||||| |||||||| ||||||||| |||||||||||||||    
T  33496653 ccatacacacattataccactccatgtgagagtgtgtgagagacaa 33496608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 596 - 669
Target Start/End: Original strand, 47480122 - 47480194
Alignment:
Q  596 tggacacatgtcaccattgtgtgtggatgtacaagtggtacatgccacataaattagtctatgtatcactactc 669  Q
    |||||||||||||| ||||| | ||| ||||||| ||||||||||||| |||  | |||||||||||| |||||    
T  47480122 tggacacatgtcacaattgtat-tgggtgtacaaatggtacatgccacctaaggtggtctatgtatcattactc 47480194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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