View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17554_low_5 (Length: 539)
Name: NF17554_low_5
Description: NF17554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17554_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 509; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 509; E-Value: 0
Query Start/End: Original strand, 18 - 526
Target Start/End: Original strand, 36939194 - 36939702
Alignment:
| Q |
18 |
agtttagacattcatcttttcaaaaatcaaagtttcttgaaatggggtgttagatatacaatagctagaggcttggcttctgcactgttatatttgcatg |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36939194 |
agtttagacattcatcttttcaaaaatcaaagtttcttgaaatggggtgttagatatacaatagctagaggcttggcttctgcactgttatatttgcatg |
36939293 |
T |
|
| Q |
118 |
aagaatgggaacaatgtgttgtacatagagacataaaagcaagtaacatcatgttggattcagagtttaatgcaaaacttggagatttcggtttagcaag |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36939294 |
aagaatgggaacaatgtgttgtacatagagacataaaagcaagtaacatcatgttggattcagagtttaatgcaaaacttggagatttcggtttagcaag |
36939393 |
T |
|
| Q |
218 |
gtttgtggaccatgcaaaaggtgcacaaactacagctttagcagggactttgggatacatggctcctgaatgtgctaccacaggaagagctagtaaagaa |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36939394 |
gtttgtggaccatgcaaaaggtgcacaaactacagctttagcagggactttgggatacatggctcctgaatgtgctaccacaggaagagctagtaaagaa |
36939493 |
T |
|
| Q |
318 |
acagacgtgtatagttttggtattgttgctttagagatagcttgcggaagaaaacctataataaaccttaaggctcaagaaaatgaaatacatattgtgg |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36939494 |
acagacgtgtatagttttggtattgttgctttagagatagcttgcggaagaaaacctataataaaccttaaggctcaagaaaatgaaatacatattgtgg |
36939593 |
T |
|
| Q |
418 |
agtgggtttgggggctatatggaagagggaaaattcttgaagcagtagatccaaaactagatggagattttgaacaagaacaaatcaagtgcatgatgat |
517 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36939594 |
agtgggtttgggggctatatggaagagggaaaattcttgaagcagtagatccaaaactagatggagattttgaacaagaacaaatcaagtgcatgatgat |
36939693 |
T |
|
| Q |
518 |
tgttggtct |
526 |
Q |
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||||||||| |
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| T |
36939694 |
tgttggtct |
36939702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 18 - 526
Target Start/End: Complemental strand, 36941924 - 36941422
Alignment:
| Q |
18 |
agtttagacattcatcttttcaaaaatcaaagtttcttgaaatggggtgttagatatacaatagctagaggcttggcttctgcactgttatatttgcatg |
117 |
Q |
| |
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||||||||||||||||||||||| || |||||||| ||||||||||||||||||||||||||||||| ||||||||| |||||| |||| || ||||||| |
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| T |
36941924 |
agtttagacattcatcttttcaagaaacaaagtttgttgaaatggggtgttagatatacaatagctaaaggcttggcatctgcattgttgtacttgcatg |
36941825 |
T |
|
| Q |
118 |
aagaatgggaacaatgtgttgtacatagagacataaaagcaagtaacatcatgttggattcagagtttaatgcaaaacttggagatttcggtttagcaag |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |
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| T |
36941824 |
aagaatgggaacaatgtgttgtacatagagacataaaagcaagtaacatcatgttggattcagaatttaacgcaaaacttggagatttcggtttagcaag |
36941725 |
T |
|
| Q |
218 |
gtttgtggaccatgcaaaaggtgcacaaactacagctttagcagggactttgggatacatggctcctgaatgtgctaccacaggaagagctagtaaagaa |
317 |
Q |
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||||||||| ||||||||||||| |||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || ||||||||| |
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| T |
36941724 |
gtttgtggatcatgcaaaaggtggacaaaccacagctttagcagggactatgggatacatggctcctgaatgtgctaccacaggaagggccagtaaagaa |
36941625 |
T |
|
| Q |
318 |
acagacgtgtatagttttggtattgttgctttagagatagcttgcggaagaaaacctataataaaccttaaggctcaagaaaatgaaatacatattgtgg |
417 |
Q |
| |
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|| || |||||||||||||| ||||||||||||||||||||||| ||||||||||| |||| |||| |||||||||||||||||| | ||||||| |
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| T |
36941624 |
accgatgtgtatagttttggaattgttgctttagagatagcttgtggaagaaaaccaataa------ttaatgctcaagaaaatgaaataaacattgtgg |
36941531 |
T |
|
| Q |
418 |
agtgggtttgggggctatatggaagagggaaaattcttgaagcagtagatccaaaactagatggagattttgaacaagaacaaatcaagtgcatgatgat |
517 |
Q |
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| |||||||||||||||||||||||||||| |||| |||||||||||||||||| |||||||||||||| |||| | ||||||||||||||||||||||| |
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| T |
36941530 |
aatgggtttgggggctatatggaagagggagaattgttgaagcagtagatccaagactagatggagattatgaagaggaacaaatcaagtgcatgatgat |
36941431 |
T |
|
| Q |
518 |
tgttggtct |
526 |
Q |
| |
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||||||||| |
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| T |
36941430 |
tgttggtct |
36941422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 108 - 175
Target Start/End: Original strand, 36934468 - 36934535
Alignment:
| Q |
108 |
tatttgcatgaagaatgggaacaatgtgttgtacatagagacataaaagcaagtaacatcatgttgga |
175 |
Q |
| |
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|||||||| |||||||||||| ||||||| | ||||| ||||||||| |||| ||||| |||||||| |
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| T |
36934468 |
tatttgcaggaagaatgggaaaaatgtgtgattcatagggacataaaatcaagcaacataatgttgga |
36934535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 78 - 208
Target Start/End: Original strand, 36949483 - 36949613
Alignment:
| Q |
78 |
atagctagaggcttggcttctgcactgttatatttgcatgaagaatgggaacaatgtgttgtacatagagacataaaagcaagtaacatcatgttggatt |
177 |
Q |
| |
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||||||||||| ||||| || ||| | || || |||||||||| || || || ||||| ||||||||||||||||| |||| || | |||||||||| |
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| T |
36949483 |
atagctagaggtttggcctcggcattattgtacctgcatgaagagtgtgagcattgtgtgctacatagagacataaaatcaagcaatgttatgttggatt |
36949582 |
T |
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| Q |
178 |
cagagtttaatgcaaaacttggagatttcgg |
208 |
Q |
| |
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| | || ||| |||| |||||||||||||| |
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| T |
36949583 |
ctaatttcaatacaaagcttggagatttcgg |
36949613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 78 - 208
Target Start/End: Original strand, 36959617 - 36959747
Alignment:
| Q |
78 |
atagctagaggcttggcttctgcactgttatatttgcatgaagaatgggaacaatgtgttgtacatagagacataaaagcaagtaacatcatgttggatt |
177 |
Q |
| |
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||||||||||| ||||| || ||| | || || |||||||||| || || || ||||| ||||||||||||||||| |||| || | |||||||||| |
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| T |
36959617 |
atagctagaggtttggcctcggcattattgtacctgcatgaagagtgtgagcattgtgtgctacatagagacataaaatcaagcaatgttatgttggatt |
36959716 |
T |
|
| Q |
178 |
cagagtttaatgcaaaacttggagatttcgg |
208 |
Q |
| |
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| | || ||| |||| |||||||||||||| |
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| T |
36959717 |
ctaatttcaatacaaagcttggagatttcgg |
36959747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 90 - 175
Target Start/End: Original strand, 47871573 - 47871658
Alignment:
| Q |
90 |
ttggcttctgcactgttatatttgcatgaagaatgggaacaatgtgttgtacatagagacataaaagcaagtaacatcatgttgga |
175 |
Q |
| |
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|||||||| ||| |||| ||| | ||||||||||||||||||||||| | ||||||||||||||| | || ||||| |||||||| |
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| T |
47871573 |
ttggcttcggcattgttgtatcttcatgaagaatgggaacaatgtgtgattcatagagacataaaatccagcaacattatgttgga |
47871658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 103 - 163
Target Start/End: Complemental strand, 22912827 - 22912767
Alignment:
| Q |
103 |
tgttatatttgcatgaagaatgggaacaatgtgttgtacatagagacataaaagcaagtaa |
163 |
Q |
| |
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|||| ||||| |||||||||||||||||| |||| | ||||||||||| ||||| ||||| |
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|
| T |
22912827 |
tgttttatttacatgaagaatgggaacaagttgttattcatagagacattaaagctagtaa |
22912767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 299 - 358
Target Start/End: Complemental strand, 3054491 - 3054432
Alignment:
| Q |
299 |
aggaagagctagtaaagaaacagacgtgtatagttttggtattgttgctttagagatagc |
358 |
Q |
| |
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|||||| |||||||||||| | ||| ||||||||||||| ||||||||||| ||| |||| |
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| T |
3054491 |
aggaagggctagtaaagaatctgacatgtatagttttggaattgttgctttggagctagc |
3054432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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