View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17554_low_7 (Length: 500)

Name: NF17554_low_7
Description: NF17554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17554_low_7
NF17554_low_7
[»] chr2 (27 HSPs)
chr2 (14-317)||(3036910-3037213)
chr2 (408-500)||(3037732-3037826)
chr2 (17-92)||(7437403-7437478)
chr2 (405-499)||(22857810-22857904)
chr2 (420-500)||(12486013-12486093)
chr2 (430-500)||(6761512-6761582)
chr2 (434-500)||(22857851-22857917)
chr2 (430-500)||(44737314-44737383)
chr2 (420-473)||(27182096-27182149)
chr2 (420-473)||(27831638-27831691)
chr2 (415-463)||(3037809-3037857)
chr2 (417-489)||(41153169-41153241)
chr2 (420-500)||(42263517-42263597)
chr2 (432-472)||(42341651-42341691)
chr2 (432-471)||(16241343-16241382)
chr2 (432-471)||(25892020-25892059)
chr2 (432-470)||(6761498-6761536)
chr2 (417-455)||(9373486-9373524)
chr2 (432-470)||(18452602-18452640)
chr2 (417-471)||(40430742-40430796)
chr2 (420-497)||(9152429-9152506)
chr2 (430-463)||(27596733-27596766)
chr2 (433-486)||(35728526-35728579)
chr2 (432-489)||(38554516-38554573)
chr2 (432-497)||(38598506-38598571)
chr2 (417-489)||(20555276-20555348)
chr2 (432-468)||(44737361-44737397)
[»] chr3 (32 HSPs)
chr3 (418-500)||(48593161-48593243)
chr3 (420-500)||(28406514-28406594)
chr3 (421-500)||(55139195-55139274)
chr3 (417-500)||(40198413-40198496)
chr3 (430-500)||(8987776-8987846)
chr3 (420-500)||(8243703-8243783)
chr3 (432-500)||(55139220-55139288)
chr3 (434-497)||(8987764-8987827)
chr3 (432-472)||(8243757-8243797)
chr3 (420-500)||(19649626-19649706)
chr3 (417-489)||(25910249-25910321)
chr3 (417-489)||(53441965-53442037)
chr3 (432-471)||(6086977-6087016)
chr3 (430-497)||(9190078-9190145)
chr3 (432-471)||(10049701-10049740)
chr3 (417-488)||(12747756-12747827)
chr3 (430-497)||(23825199-23825266)
chr3 (432-471)||(25846587-25846626)
chr3 (430-497)||(28564966-28565033)
chr3 (432-470)||(9440205-9440243)
chr3 (430-500)||(22003843-22003913)
chr3 (430-500)||(22011360-22011430)
chr3 (420-470)||(40141951-40142001)
chr3 (427-500)||(32711249-32711322)
chr3 (423-471)||(335451-335499)
chr3 (430-462)||(379158-379190)
chr3 (417-489)||(12064967-12065039)
chr3 (420-500)||(18765305-18765385)
chr3 (423-471)||(19202326-19202374)
chr3 (420-472)||(23825170-23825222)
chr3 (417-497)||(28043416-28043496)
chr3 (430-462)||(44593232-44593264)
[»] chr6 (13 HSPs)
chr6 (420-500)||(1158292-1158372)
chr6 (432-500)||(1158278-1158346)
chr6 (433-500)||(7649833-7649900)
chr6 (430-497)||(8558945-8559012)
chr6 (430-497)||(24949662-24949729)
chr6 (434-500)||(766474-766540)
chr6 (423-497)||(9246066-9246140)
chr6 (417-471)||(14931276-14931330)
chr6 (417-471)||(34639116-34639170)
chr6 (385-470)||(24949708-24949793)
chr6 (406-454)||(1301923-1301971)
chr6 (427-467)||(24252910-24252950)
chr6 (430-462)||(30686629-30686661)
[»] chr4 (37 HSPs)
chr4 (420-500)||(4698644-4698724)
chr4 (420-500)||(31240889-31240969)
chr4 (423-500)||(4698670-4698747)
chr4 (436-500)||(20114096-20114160)
chr4 (417-489)||(16412252-16412324)
chr4 (417-489)||(53225702-53225774)
chr4 (420-471)||(19485593-19485644)
chr4 (430-497)||(56216284-56216351)
chr4 (420-500)||(14785063-14785143)
chr4 (420-500)||(31854426-31854506)
chr4 (417-489)||(43117912-43117984)
chr4 (430-497)||(6246658-6246725)
chr4 (420-471)||(31227292-31227343)
chr4 (445-500)||(36866900-36866955)
chr4 (420-471)||(38687987-38688038)
chr4 (434-497)||(53303786-53303849)
chr4 (432-471)||(53621404-53621443)
chr4 (417-487)||(2643626-2643696)
chr4 (417-455)||(22210807-22210845)
chr4 (420-462)||(39732022-39732064)
chr4 (432-497)||(2411873-2411938)
chr4 (432-497)||(6246641-6246706)
chr4 (423-500)||(21221141-21221218)
chr4 (88-188)||(37883209-37883310)
chr4 (420-472)||(2411915-2411967)
chr4 (423-463)||(15170967-15171007)
chr4 (436-500)||(21229262-21229326)
chr4 (432-500)||(23125679-23125747)
chr4 (417-489)||(26066387-26066459)
chr4 (417-489)||(30191914-30191986)
chr4 (407-455)||(34021544-34021592)
chr4 (432-500)||(39877436-39877504)
chr4 (417-489)||(45828473-45828545)
chr4 (432-500)||(47948972-47949040)
chr4 (417-489)||(48361070-48361142)
chr4 (432-500)||(56216267-56216335)
chr4 (417-461)||(56491158-56491202)
[»] chr7 (18 HSPs)
chr7 (420-500)||(26563968-26564048)
chr7 (430-500)||(22055761-22055831)
chr7 (415-489)||(29365679-29365753)
chr7 (420-472)||(7463470-7463522)
chr7 (415-455)||(19512747-19512787)
chr7 (432-500)||(26563954-26564022)
chr7 (430-497)||(7107680-7107747)
chr7 (430-497)||(23248699-23248766)
chr7 (430-497)||(34281700-34281767)
chr7 (430-497)||(46449809-46449876)
chr7 (434-500)||(7107665-7107731)
chr7 (430-472)||(18672167-18672209)
chr7 (434-500)||(46449825-46449891)
chr7 (423-500)||(19979541-19979618)
chr7 (410-462)||(16861523-16861575)
chr7 (432-500)||(23248715-23248783)
chr7 (432-500)||(34281716-34281784)
chr7 (417-489)||(36245434-36245506)
[»] scaffold0018 (2 HSPs)
scaffold0018 (432-500)||(183839-183907)
scaffold0018 (435-500)||(183828-183893)
[»] chr8 (22 HSPs)
chr8 (436-500)||(10396839-10396903)
chr8 (417-489)||(10839781-10839853)
chr8 (417-500)||(6354694-6354777)
chr8 (433-497)||(7668241-7668305)
chr8 (423-471)||(43295139-43295187)
chr8 (432-471)||(2229146-2229185)
chr8 (420-471)||(22781903-22781954)
chr8 (430-497)||(25848017-25848084)
chr8 (430-497)||(37564662-37564729)
chr8 (432-471)||(37564707-37564746)
chr8 (417-500)||(41915612-41915695)
chr8 (432-471)||(43135077-43135116)
chr8 (434-472)||(3799791-3799829)
chr8 (434-500)||(24255918-24255984)
chr8 (417-463)||(44329171-44329217)
chr8 (417-462)||(43932134-43932179)
chr8 (433-497)||(3799750-3799814)
chr8 (427-467)||(14113289-14113329)
chr8 (432-500)||(25848000-25848068)
chr8 (432-472)||(32159109-32159149)
chr8 (434-462)||(33837665-33837693)
chr8 (433-497)||(40834186-40834250)
[»] chr5 (23 HSPs)
chr5 (420-500)||(38393802-38393882)
chr5 (417-471)||(23411183-23411237)
chr5 (420-497)||(42311831-42311908)
chr5 (432-500)||(26898224-26898292)
chr5 (417-489)||(38394446-38394518)
chr5 (430-462)||(42896097-42896129)
chr5 (430-497)||(2825910-2825977)
chr5 (430-497)||(7749968-7750035)
chr5 (420-471)||(21610377-21610428)
chr5 (432-471)||(25027727-25027766)
chr5 (432-471)||(29374203-29374242)
chr5 (420-471)||(31803034-31803085)
chr5 (432-471)||(37699856-37699895)
chr5 (417-455)||(6604414-6604452)
chr5 (420-470)||(18353285-18353335)
chr5 (417-463)||(36417131-36417177)
chr5 (423-468)||(41815209-41815254)
chr5 (423-471)||(904042-904090)
chr5 (430-462)||(7053733-7053765)
chr5 (432-500)||(21032561-21032629)
chr5 (432-472)||(21090451-21090491)
chr5 (430-462)||(36417078-36417110)
chr5 (405-500)||(38393760-38393856)
[»] chr1 (18 HSPs)
chr1 (398-474)||(28358995-28359071)
chr1 (417-463)||(25021249-25021295)
chr1 (430-500)||(38830530-38830600)
chr1 (417-462)||(27422992-27423037)
chr1 (433-497)||(7796124-7796188)
chr1 (420-500)||(25021278-25021358)
chr1 (420-472)||(28989293-28989345)
chr1 (432-471)||(14281623-14281662)
chr1 (432-471)||(23398113-23398152)
chr1 (417-500)||(26760220-26760303)
chr1 (417-500)||(26924231-26924314)
chr1 (432-471)||(38830516-38830555)
chr1 (430-497)||(40161204-40161271)
chr1 (434-500)||(7796137-7796203)
chr1 (417-471)||(9301995-9302049)
chr1 (420-469)||(28359149-28359198)
chr1 (409-489)||(34332486-34332566)
chr1 (417-489)||(50155356-50155428)
[»] scaffold0025 (1 HSPs)
scaffold0025 (444-500)||(65997-66053)
[»] scaffold0005 (1 HSPs)
scaffold0005 (420-500)||(54587-54667)
[»] scaffold0002 (2 HSPs)
scaffold0002 (420-500)||(492352-492432)
scaffold0002 (423-467)||(423328-423372)
[»] scaffold0123 (1 HSPs)
scaffold0123 (420-471)||(29265-29316)
[»] scaffold0007 (2 HSPs)
scaffold0007 (430-497)||(77376-77443)
scaffold0007 (434-500)||(77392-77458)
[»] scaffold0009 (1 HSPs)
scaffold0009 (430-496)||(3662-3728)
[»] scaffold0006 (1 HSPs)
scaffold0006 (422-472)||(282723-282773)


Alignment Details
Target: chr2 (Bit Score: 292; Significance: 1e-164; HSPs: 27)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 14 - 317
Target Start/End: Original strand, 3036910 - 3037213
Alignment:
Q  14 gatgaagaggtatggaggagtgaaacacatgaggaagaagttccataggagagtgaggttagtggtggctgatggaagagaagattttaatcctaacgcc 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  3036910 gatgaagaggtatggaggagtgaaacacatgaggaagaagttccataggagagtgaggttagtggtggctgatggaagagaagattttaatcctaaagcc 3037009  T
Q  114 gtgaaaataacggcagaggaaataagaagaagtttgagagaaagcataattatgttgtgttttgagtttgaagaggagagtaattgtatagcacagtgat 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  3037010 gtgaaaataacggcagaggaaataagaagaagtttgagagaaagcataattgtgttgtgttttgagtttgaagaggagagtaattgtatagcacactgat 3037109  T
Q  214 gaatgatgatggttggaaacaaaatttatagagagggagtgtagggacaagacaagagtctcagtcttcattcaatgtcagccattggattgcgtgtggg 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3037110 gaatgatgatggttggaaacaaaatttatagagagggagtgtagggacaagacaagagtctcagtcttcattcaatgtcagccattggattgcgtgtggg 3037209  T
Q  314 accc 317  Q
    ||||    
T  3037210 accc 3037213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 408 - 500
Target Start/End: Original strand, 3037732 - 3037826
Alignment:
Q  408 gatcttttatataagaaacaaatgactttttaaatacattgaata--atttatgtattcggtttagaatatacaccaaatacataaattattcaa 500  Q
    |||| ||||||||||||||||||||||||||| ||||||||||||  ||| |||||| |||| ||||||||||||||||||||||||||||||||    
T  3037732 gatcctttatataagaaacaaatgactttttagatacattgaatataattgatgtatccggtctagaatatacaccaaatacataaattattcaa 3037826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 17 - 92
Target Start/End: Original strand, 7437403 - 7437478
Alignment:
Q  17 gaagaggtatggaggagtgaaacacatgaggaagaagttccataggagagtgaggttagtggtggctgatggaaga 92  Q
    ||||||||||||| ||||||| || | |||||||||||||||||||| ||||||||||||||||||||||||||||    
T  7437403 gaagaggtatggaagagtgaagcataagaggaagaagttccataggaaagtgaggttagtggtggctgatggaaga 7437478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 405 - 499
Target Start/End: Original strand, 22857810 - 22857904
Alignment:
Q  405 tccgatcttttatataagaaacaaatgactttttaaatacattgaataatttatgtattcggtttagaatatacaccaaatacataaattattca 499  Q
    |||||||||  ||| ||||||||| |||||||||| ||||||||||||||||||||||  | | |||||| || |||||||||||||||||||||    
T  22857810 tccgatcttaaatacaagaaacaattgactttttagatacattgaataatttatgtatctgatctagaatctaaaccaaatacataaattattca 22857904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 420 - 500
Target Start/End: Original strand, 12486013 - 12486093
Alignment:
Q  420 aagaaacaaatgactttttaaatacattgaataatttatgtattcggtttagaatatacaccaaatacataaattattcaa 500  Q
    |||||| || ||||||||||  | |||||||||||||||| | ||||  ||||||||| ||||||||||| ||||||||||    
T  12486013 aagaaagaattgactttttaggttcattgaataatttatggactcggcctagaatatagaccaaatacatcaattattcaa 12486093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 430 - 500
Target Start/End: Complemental strand, 6761582 - 6761512
Alignment:
Q  430 tgactttttaaatacattgaataatttatgtattcggtttagaatatacaccaaatacataaattattcaa 500  Q
    |||||||||| |||||||||||||| |||||||   ||  |||| ||| ||||||||||||||||||||||    
T  6761582 tgactttttagatacattgaataatgtatgtatctagtcaagaacataaaccaaatacataaattattcaa 6761512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 434 - 500
Target Start/End: Complemental strand, 22857917 - 22857851
Alignment:
Q  434 tttttaaatacattgaataatttatgtattcggtttagaatatacaccaaatacataaattattcaa 500  Q
    |||||| ||||| ||||||||||||||||| |||||||| | || | || |||||||||||||||||    
T  22857917 tttttagatacaatgaataatttatgtatttggtttagattctagatcagatacataaattattcaa 22857851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 430 - 500
Target Start/End: Original strand, 44737314 - 44737383
Alignment:
Q  430 tgactttttaaatacattgaataatttatgtattcggtttagaatatacaccaaatacataaattattcaa 500  Q
    |||||||||| |||||||||||||| |||||||   ||| ||||| || ||||||||||||||||||||||    
T  44737314 tgactttttagatacattgaataatgtatgtatctagttaagaatcta-accaaatacataaattattcaa 44737383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 420 - 473
Target Start/End: Original strand, 27182096 - 27182149
Alignment:
Q  420 aagaaacaaatgactttttaaatacattgaataatttatgtattcggtttagaa 473  Q
    ||||||||| ||| |||| | ||||||||||||||||||||||| |||||||||    
T  27182096 aagaaacaattgatttttcagatacattgaataatttatgtatttggtttagaa 27182149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 420 - 473
Target Start/End: Original strand, 27831638 - 27831691
Alignment:
Q  420 aagaaacaaatgactttttaaatacattgaataatttatgtattcggtttagaa 473  Q
    ||||||||| ||| |||| | ||||||||||||||||||||||| |||||||||    
T  27831638 aagaaacaattgatttttcagatacattgaataatttatgtatttggtttagaa 27831691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 415 - 463
Target Start/End: Complemental strand, 3037857 - 3037809
Alignment:
Q  415 tatataagaaacaaatgactttttaaatacattgaataatttatgtatt 463  Q
    |||| ||||||||||||| |||||| || ||||||||||||||||||||    
T  3037857 tatacaagaaacaaatgattttttagattcattgaataatttatgtatt 3037809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 417 - 489
Target Start/End: Complemental strand, 41153241 - 41153169
Alignment:
Q  417 tataagaaacaaatgactttttaaatacattgaataatttatgtattcggtttagaatatacaccaaatacat 489  Q
    ||||||||| |  |||||||||| || |||||| ||||| ||||||| |||||| |||||| |||||||||||    
T  41153241 tataagaaaaagttgactttttagattcattgagtaattgatgtatttggtttataatatagaccaaatacat 41153169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 420 - 500
Target Start/End: Complemental strand, 42263597 - 42263517
Alignment:
Q  420 aagaaacaaatgactttttaaatacattgaataatttatgtattcggtttagaatatacaccaaatacataaattattcaa 500  Q
    ||||||||| | |||||||| ||||||| ||||||||||||||| |||||||  | |  || ||||||||| |||||||||    
T  42263597 aagaaacaatttactttttagatacattaaataatttatgtatttggtttaggttcttgactaaatacatacattattcaa 42263517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 432 - 472
Target Start/End: Original strand, 42341651 - 42341691
Alignment:
Q  432 actttttaaatacattgaataatttatgtattcggtttaga 472  Q
    |||||||||||||||| ||||||||||||||| ||||||||    
T  42341651 actttttaaatacattaaataatttatgtatttggtttaga 42341691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 432 - 471
Target Start/End: Complemental strand, 16241382 - 16241343
Alignment:
Q  432 actttttaaatacattgaataatttatgtattcggtttag 471  Q
    |||||||| ||||||||||||||||||||||| |||||||    
T  16241382 actttttagatacattgaataatttatgtatttggtttag 16241343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 432 - 471
Target Start/End: Complemental strand, 25892059 - 25892020
Alignment:
Q  432 actttttaaatacattgaataatttatgtattcggtttag 471  Q
    |||||||| ||||||||||||||||||||||| |||||||    
T  25892059 actttttagatacattgaataatttatgtatttggtttag 25892020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 432 - 470
Target Start/End: Original strand, 6761498 - 6761536
Alignment:
Q  432 actttttaaatacattgaataatttatgtattcggttta 470  Q
    |||||||| ||||||||||||||||||||||| ||||||    
T  6761498 actttttagatacattgaataatttatgtatttggttta 6761536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 417 - 455
Target Start/End: Complemental strand, 9373524 - 9373486
Alignment:
Q  417 tataagaaacaaatgactttttaaatacattgaataatt 455  Q
    |||||||||||| ||||||||||||| ||||||||||||    
T  9373524 tataagaaacaattgactttttaaattcattgaataatt 9373486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 432 - 470
Target Start/End: Original strand, 18452602 - 18452640
Alignment:
Q  432 actttttaaatacattgaataatttatgtattcggttta 470  Q
    |||||||| ||||||||||||||||||||||| ||||||    
T  18452602 actttttagatacattgaataatttatgtatttggttta 18452640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 417 - 471
Target Start/End: Complemental strand, 40430796 - 40430742
Alignment:
Q  417 tataagaaacaaatgactttttaaatacattgaataatttatgtattcggtttag 471  Q
    ||||||| |||| | |||||||| ||||||| ||||||||||||||| |||||||    
T  40430796 tataagagacaatttactttttagatacattaaataatttatgtatttggtttag 40430742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 420 - 497
Target Start/End: Complemental strand, 9152506 - 9152429
Alignment:
Q  420 aagaaacaaatgactttttaaatacattgaataatttatgtattcggtttagaatatacaccaaatacataaattatt 497  Q
    ||||||||| |||||||||| || |||||| ||||| ||||||   || || |||||| ||||||||||| |||||||    
T  9152506 aagaaacaattgactttttagattcattgagtaattgatgtatctagtctaaaatatagaccaaatacatcaattatt 9152429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 430 - 463
Target Start/End: Complemental strand, 27596766 - 27596733
Alignment:
Q  430 tgactttttaaatacattgaataatttatgtatt 463  Q
    |||||||||| |||||||||||||||||||||||    
T  27596766 tgactttttagatacattgaataatttatgtatt 27596733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 433 - 486
Target Start/End: Complemental strand, 35728579 - 35728526
Alignment:
Q  433 ctttttaaatacattgaataatttatgtattcggtttagaatatacaccaaata 486  Q
    |||||||||| |||||||||||| ||||||   |||||||||||| ||||||||    
T  35728579 ctttttaaattcattgaataattgatgtatcttgtttagaatatagaccaaata 35728526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 432 - 489
Target Start/End: Complemental strand, 38554573 - 38554516
Alignment:
Q  432 actttttaaatacattgaataatttatgtattcggtttagaatatacaccaaatacat 489  Q
    ||||||||||| |||||| ||||| ||||| | ||| ||||||||| |||||||||||    
T  38554573 actttttaaattcattgagtaattaatgtacttggtatagaatatagaccaaatacat 38554516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 432 - 497
Target Start/End: Complemental strand, 38598571 - 38598506
Alignment:
Q  432 actttttaaatacattgaataatttatgtattcggtttagaatatacaccaaatacataaattatt 497  Q
    |||||||| |||||||||||||| |||||||  |||  ||||  || |||||||||||||||||||    
T  38598571 actttttagatacattgaataatatatgtatctggtcaagaacctaaaccaaatacataaattatt 38598506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 417 - 489
Target Start/End: Original strand, 20555276 - 20555348
Alignment:
Q  417 tataagaaacaaatgactttttaaatacattgaataatttatgtattcggtttagaatatacaccaaatacat 489  Q
    ||||||||| || | | |||||| ||||||||||||||| ||||||   || ||||||||| |||||||||||    
T  20555276 tataagaaaaaattaattttttagatacattgaataattgatgtatcttgtctagaatatagaccaaatacat 20555348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 432 - 468
Target Start/End: Complemental strand, 44737397 - 44737361
Alignment:
Q  432 actttttaaatacattgaataatttatgtattcggtt 468  Q
    |||||||| ||||||||||||||||||||||| ||||    
T  44737397 actttttagatacattgaataatttatgtatttggtt 44737361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 2e-22; HSPs: 32)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 418 - 500
Target Start/End: Original strand, 48593161 - 48593243
Alignment:
Q  418 ataagaaacaaatgactttttaaatacattgaataatttatgtattcggtttagaatatacaccaaatacataaattattcaa 500  Q
    ||||||||||| |||||||||| ||||||||||||||| ||||||  ||| ||||||||| ||||||||||||||||||||||    
T  48593161 ataagaaacaagtgactttttagatacattgaataattgatgtatcgggtctagaatatagaccaaatacataaattattcaa 48593243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 420 - 500
Target Start/End: Complemental strand, 28406594 - 28406514
Alignment:
Q  420 aagaaacaaatgactttttaaatacattgaataatttatgtattcggtttagaatatacaccaaatacataaattattcaa 500  Q
    ||||||||| ||||||||||  | ||||||||||||||||||  |||| ||||||||| ||||||||||| ||||||||||    
T  28406594 aagaaacaattgactttttaggttcattgaataatttatgtacccggtctagaatatagaccaaatacattaattattcaa 28406514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 421 - 500
Target Start/End: Original strand, 55139195 - 55139274
Alignment:
Q  421 agaaacaaatgactttttaaatacattgaataatttatgtattcggtttagaatatacaccaaatacataaattattcaa 500  Q
    |||||||| |||||||||| ||||||||||||||||||||||| | |||| | | |  ||||||||||||||||||||||    
T  55139195 agaaacaattgactttttagatacattgaataatttatgtatttgttttaaattcttgaccaaatacataaattattcaa 55139274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 417 - 500
Target Start/End: Original strand, 40198413 - 40198496
Alignment:
Q  417 tataagaaacaaatgactttttaaatacattgaataatttatgtattcggtttagaatatacaccaaatacataaattattcaa 500  Q
    |||||||||||| ||| |||||  || |||||||||||||||||||||||| ||||||||  |||| |||||| |||| |||||    
T  40198413 tataagaaacaattgaatttttttattcattgaataatttatgtattcggtctagaatatcgaccagatacatcaattgttcaa 40198496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 430 - 500
Target Start/End: Complemental strand, 8987846 - 8987776
Alignment:
Q  430 tgactttttaaatacattgaataatttatgtattcggtttagaatatacaccaaatacataaattattcaa 500  Q
    |||||||||| ||||||| ||||||||||||||| |||||| | | || ||||||||||||| ||||||||    
T  8987846 tgactttttagatacattcaataatttatgtatttggtttaaattctagaccaaatacataagttattcaa 8987776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 420 - 500
Target Start/End: Original strand, 8243703 - 8243783
Alignment:
Q  420 aagaaacaaatgactttttaaatacattgaataatttatgtattcggtttagaatatacaccaaatacataaattattcaa 500  Q
    |||| |||| |||||||||| |||||||||||||| |||||||   ||  ||||| || ||||||||||||||||||||||    
T  8243703 aagagacaattgactttttagatacattgaataatgtatgtatctagtcaagaatctaaaccaaatacataaattattcaa 8243783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 432 - 500
Target Start/End: Complemental strand, 55139288 - 55139220
Alignment:
Q  432 actttttaaatacattgaataatttatgtattcggtttagaatatacaccaaatacataaattattcaa 500  Q
    |||||||| ||| ||||||||||||||||||| |||  ||||| || | ||||||||||||||||||||    
T  55139288 actttttagatatattgaataatttatgtatttggtcaagaatttaaaacaaatacataaattattcaa 55139220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 434 - 497
Target Start/End: Original strand, 8987764 - 8987827
Alignment:
Q  434 tttttaaatacattgaataatttatgtattcggtttagaatatacaccaaatacataaattatt 497  Q
    |||||| || |||||||||| ||||||||| ||| |||||| || |||||||||||||||||||    
T  8987764 tttttagatgcattgaataacttatgtatttggtctagaatttaaaccaaatacataaattatt 8987827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 432 - 472
Target Start/End: Complemental strand, 8243797 - 8243757
Alignment:
Q  432 actttttaaatacattgaataatttatgtattcggtttaga 472  Q
    |||||||| ||||||||||||||||||||||| ||||||||    
T  8243797 actttttagatacattgaataatttatgtatttggtttaga 8243757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 420 - 500
Target Start/End: Complemental strand, 19649706 - 19649626
Alignment:
Q  420 aagaaacaaatgactttttaaatacattgaataatttatgtattcggtttagaatatacaccaaatacataaattattcaa 500  Q
    ||||||||  ||| |||||| || |||||| ||||| ||||||||||| || |||||| || |||||||| ||||||||||    
T  19649706 aagaaacatttgattttttagattcattgagtaattgatgtattcggtctaaaatatagactaaatacatcaattattcaa 19649626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 417 - 489
Target Start/End: Complemental strand, 25910321 - 25910249
Alignment:
Q  417 tataagaaacaaatgactttttaaatacattgaataatttatgtattcggtttagaatatacaccaaatacat 489  Q
    ||||||||| |  |||||||||||||  ||||| ||||| ||||||| ||| ||||||||| |||||||||||    
T  25910321 tataagaaaaagttgactttttaaatttattgagtaattaatgtatttggtgtagaatatagaccaaatacat 25910249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 417 - 489
Target Start/End: Complemental strand, 53442037 - 53441965
Alignment:
Q  417 tataagaaacaaatgactttttaaatacattgaataatttatgtattcggtttagaatatacaccaaatacat 489  Q
    ||||||||| |  ||||||||||||| |||||||||||| ||||| | ||| |||||| || |||||||||||    
T  53442037 tataagaaaaagttgactttttaaattcattgaataattaatgtacttggtatagaatgtataccaaatacat 53441965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 432 - 471
Target Start/End: Complemental strand, 6087016 - 6086977
Alignment:
Q  432 actttttaaatacattgaataatttatgtattcggtttag 471  Q
    |||||||| ||||||||||||||||||||||| |||||||    
T  6087016 actttttagatacattgaataatttatgtatttggtttag 6086977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 430 - 497
Target Start/End: Complemental strand, 9190145 - 9190078
Alignment:
Q  430 tgactttttaaatacattgaataatttatgtattcggtttagaatatacaccaaatacataaattatt 497  Q
    |||||||||| |||||||||||||| |||||||   ||  ||||| || |||||||||||||||||||    
T  9190145 tgactttttagatacattgaataatgtatgtatctagtcaagaatttaaaccaaatacataaattatt 9190078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 432 - 471
Target Start/End: Original strand, 10049701 - 10049740
Alignment:
Q  432 actttttaaatacattgaataatttatgtattcggtttag 471  Q
    |||||||| ||||||||||||||||||||||| |||||||    
T  10049701 actttttagatacattgaataatttatgtatttggtttag 10049740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 417 - 488
Target Start/End: Complemental strand, 12747827 - 12747756
Alignment:
Q  417 tataagaaacaaatgactttttaaatacattgaataatttatgtattcggtttagaatatacaccaaataca 488  Q
    ||||||||| || ||| |||||| || ||| || ||||| ||||||| ||| ||||||||||||||||||||    
T  12747827 tataagaaaaaattgattttttagattcatcgagtaattgatgtatttggtctagaatatacaccaaataca 12747756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 430 - 497
Target Start/End: Complemental strand, 23825266 - 23825199
Alignment:
Q  430 tgactttttaaatacattgaataatttatgtattcggtttagaatatacaccaaatacataaattatt 497  Q
    |||||||||| |||||||||||||| |||||||   ||  ||||| || |||||||||||||||||||    
T  23825266 tgactttttagatacattgaataatgtatgtatctagtcaagaatctaaaccaaatacataaattatt 23825199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 432 - 471
Target Start/End: Complemental strand, 25846626 - 25846587
Alignment:
Q  432 actttttaaatacattgaataatttatgtattcggtttag 471  Q
    |||||||||||||||| ||||||||||||||| |||||||    
T  25846626 actttttaaatacattaaataatttatgtatttggtttag 25846587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 430 - 497
Target Start/End: Original strand, 28564966 - 28565033
Alignment:
Q  430 tgactttttaaatacattgaataatttatgtattcggtttagaatatacaccaaatacataaattatt 497  Q
    |||||||||| |||||||||||||| |||||||   ||  ||||| || |||||||||||||||||||    
T  28564966 tgactttttatatacattgaataatgtatgtatctagtcaagaatctaaaccaaatacataaattatt 28565033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 432 - 470
Target Start/End: Complemental strand, 9440243 - 9440205
Alignment:
Q  432 actttttaaatacattgaataatttatgtattcggttta 470  Q
    |||||||| ||||||||||||||||||||||| ||||||    
T  9440243 actttttagatacattgaataatttatgtatttggttta 9440205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 430 - 500
Target Start/End: Complemental strand, 22003913 - 22003843
Alignment:
Q  430 tgactttttaaatacattgaataatttatgtattcggtttagaatatacaccaaatacataaattattcaa 500  Q
    |||||||||| ||||||||||||||||||||||   ||  ||||| || || ||||| |||||||||||||    
T  22003913 tgactttttagatacattgaataatttatgtatctagtaaagaatctaaactaaatatataaattattcaa 22003843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 430 - 500
Target Start/End: Complemental strand, 22011430 - 22011360
Alignment:
Q  430 tgactttttaaatacattgaataatttatgtattcggtttagaatatacaccaaatacataaattattcaa 500  Q
    |||||||||| ||||||||||||||||||||||   ||  ||||| || || ||||| |||||||||||||    
T  22011430 tgactttttagatacattgaataatttatgtatctagtaaagaatctaaactaaatatataaattattcaa 22011360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 420 - 470
Target Start/End: Complemental strand, 40142001 - 40141951
Alignment:
Q  420 aagaaacaaatgactttttaaatacattgaataatttatgtattcggttta 470  Q
    ||||||||| | |||||||| ||||||| ||||||||||||||| ||||||    
T  40142001 aagaaacaatttactttttagatacattaaataatttatgtatttggttta 40141951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 427 - 500
Target Start/End: Complemental strand, 32711322 - 32711249
Alignment:
Q  427 aaatgactttttaaatacattgaataatttatgtattcggtttagaatatacaccaaatacataaattattcaa 500  Q
    |||| |||||||| || |||||||||||| ||||||  ||| || ||||||  |||||||||| ||||||||||    
T  32711322 aaatcactttttagattcattgaataattgatgtatctggtctataatataggccaaatacatcaattattcaa 32711249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 423 - 471
Target Start/End: Complemental strand, 335499 - 335451
Alignment:
Q  423 aaacaaatgactttttaaatacattgaataatttatgtattcggtttag 471  Q
    |||||| | |||||||| ||||||| ||||||||||||||| |||||||    
T  335499 aaacaatttactttttagatacattaaataatttatgtatttggtttag 335451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 430 - 462
Target Start/End: Complemental strand, 379190 - 379158
Alignment:
Q  430 tgactttttaaatacattgaataatttatgtat 462  Q
    |||||||||| ||||||||||||||||||||||    
T  379190 tgactttttagatacattgaataatttatgtat 379158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 417 - 489
Target Start/End: Complemental strand, 12065039 - 12064967
Alignment:
Q  417 tataagaaacaaatgactttttaaatacattgaataatttatgtattcggtttagaatatacaccaaatacat 489  Q
    ||||||||| || ||||||||||||| |||| | ||||| || ||||  || ||||||||| |||||||||||    
T  12065039 tataagaaaaaattgactttttaaattcattaagtaattaatatatttagtatagaatatagaccaaatacat 12064967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 420 - 500
Target Start/End: Complemental strand, 18765385 - 18765305
Alignment:
Q  420 aagaaacaaatgactttttaaatacattgaataatttatgtattcggtttagaatatacaccaaatacataaattattcaa 500  Q
    ||||||||| | |||||||| || |||| ||||||||||||||| |||||||  | |  || ||||||||| |||||||||    
T  18765385 aagaaacaatttactttttagatgcattaaataatttatgtatttggtttaggttcttgactaaatacatacattattcaa 18765305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 423 - 471
Target Start/End: Complemental strand, 19202374 - 19202326
Alignment:
Q  423 aaacaaatgactttttaaatacattgaataatttatgtattcggtttag 471  Q
    |||||| | |||||||| ||||||| ||||||||||||||| |||||||    
T  19202374 aaacaatttactttttagatacattaaataatttatgtatttggtttag 19202326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 420 - 472
Target Start/End: Original strand, 23825170 - 23825222
Alignment:
Q  420 aagaaacaaatgactttttaaatacattgaataatttatgtattcggtttaga 472  Q
    ||||||||| | |||||||| ||||||  ||||||||||||||| ||||||||    
T  23825170 aagaaacaatttactttttagatacatcaaataatttatgtatttggtttaga 23825222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 417 - 497
Target Start/End: Complemental strand, 28043496 - 28043416
Alignment:
Q  417 tataagaaacaaatgactttttaaatacattgaataatttatgtattcggtttagaatatacaccaaatacataaattatt 497  Q
    |||||||||| | ||| | |||| || |||||||||||| ||||||  |||||| |||||| ||||||||| | |||||||    
T  28043496 tataagaaactattgattatttagattcattgaataattaatgtatatggtttaaaatatataccaaatacgtcaattatt 28043416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 430 - 462
Target Start/End: Original strand, 44593232 - 44593264
Alignment:
Q  430 tgactttttaaatacattgaataatttatgtat 462  Q
    ||||||||||||||||||||||||| |||||||    
T  44593232 tgactttttaaatacattgaataatatatgtat 44593264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 8e-19; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 420 - 500
Target Start/End: Complemental strand, 1158372 - 1158292
Alignment:
Q  420 aagaaacaaatgactttttaaatacattgaataatttatgtattcggtttagaatatacaccaaatacataaattattcaa 500  Q
    |||||| || |||||||||||||||||||||||||| ||||||| ||| ||||||||| ||| ||||||| ||||||||||    
T  1158372 aagaaataattgactttttaaatacattgaataattgatgtatttggtctagaatatagaccgaatacattaattattcaa 1158292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 432 - 500
Target Start/End: Original strand, 1158278 - 1158346
Alignment:
Q  432 actttttaaatacattgaataatttatgtattcggtttagaatatacaccaaatacataaattattcaa 500  Q
    |||||||| || |||||||||||| ||||||||||| || | | || ||||||||||| ||||||||||    
T  1158278 actttttagattcattgaataattaatgtattcggtctatattctagaccaaatacatcaattattcaa 1158346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 433 - 500
Target Start/End: Original strand, 7649833 - 7649900
Alignment:
Q  433 ctttttaaatacattgaataatttatgtattcggtttagaatatacaccaaatacataaattattcaa 500  Q
    ||||||| || |||||||||||| ||||||| ||| || |||||| |||||||| || ||||||||||    
T  7649833 ctttttagattcattgaataattgatgtatttggtctaaaatatataccaaataaatcaattattcaa 7649900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 430 - 497
Target Start/End: Original strand, 8558945 - 8559012
Alignment:
Q  430 tgactttttaaatacattgaataatttatgtattcggtttagaatatacaccaaatacataaattatt 497  Q
    |||||||||| |||||||||||||| |||||||   ||| ||||  || |||||||||||||||||||    
T  8558945 tgactttttagatacattgaataatgtatgtatctagttaagaacctaaaccaaatacataaattatt 8559012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 430 - 497
Target Start/End: Original strand, 24949662 - 24949729
Alignment:
Q  430 tgactttttaaatacattgaataatttatgtattcggtttagaatatacaccaaatacataaattatt 497  Q
    |||||||||| |||||||||||||| |||||||   ||  |||| ||| |||||||||||||||||||    
T  24949662 tgactttttagatacattgaataatgtatgtatctagtcaagaacataaaccaaatacataaattatt 24949729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 434 - 500
Target Start/End: Complemental strand, 766540 - 766474
Alignment:
Q  434 tttttaaatacattgaataatttatgtattcggtttagaatatacaccaaatacataaattattcaa 500  Q
    |||||| ||||||| ||||||||||||||| |||||||  |||  || ||||||||| |||||||||    
T  766540 tttttagatacattaaataatttatgtatttggtttaggttattgactaaatacatacattattcaa 766474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 423 - 497
Target Start/End: Original strand, 9246066 - 9246140
Alignment:
Q  423 aaacaaatgactttttaaatacattgaataatttatgtattcggtttagaatatacaccaaatacataaattatt 497  Q
    |||||| ||||||||||  | |||||||||||||||||||||| | || |||||| |||| ||| || |||||||    
T  9246066 aaacaattgactttttaggttcattgaataatttatgtattcgatctaaaatatagaccacataaatcaattatt 9246140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 417 - 471
Target Start/End: Original strand, 14931276 - 14931330
Alignment:
Q  417 tataagaaacaaatgactttttaaatacattgaataatttatgtattcggtttag 471  Q
    ||||||| |||| | |||||||| ||||||| ||||||||||||||| |||||||    
T  14931276 tataagagacaatttactttttagatacattaaataatttatgtatttggtttag 14931330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 417 - 471
Target Start/End: Complemental strand, 34639170 - 34639116
Alignment:
Q  417 tataagaaacaaatgactttttaaatacattgaataatttatgtattcggtttag 471  Q
    ||||||| |||| | |||||||| |||||||||| |||||||||||| |||||||    
T  34639170 tataagagacaatttactttttagatacattgaaaaatttatgtatttggtttag 34639116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 385 - 470
Target Start/End: Complemental strand, 24949793 - 24949708
Alignment:
Q  385 acatcttatatgatattctttccgatcttttatataagaaacaaatgactttttaaatacattgaataatttatgtattcggttta 470  Q
    ||||||||||||||| ||  |||| || | | || |||| |||| | |||||||| ||||||| ||||||||||||||| ||||||    
T  24949793 acatcttatatgatactccctccggtcctatttacaagagacaatttactttttagatacattaaataatttatgtatttggttta 24949708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 406 - 454
Target Start/End: Original strand, 1301923 - 1301971
Alignment:
Q  406 ccgatcttttatataagaaacaaatgactttttaaatacattgaataat 454  Q
    |||||||||| |||||||||||| ||| |||||| ||||||| ||||||    
T  1301923 ccgatcttttttataagaaacaattgattttttagatacattcaataat 1301971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 427 - 467
Target Start/End: Original strand, 24252910 - 24252950
Alignment:
Q  427 aaatgactttttaaatacattgaataatttatgtattcggt 467  Q
    |||||||||||||| || ||||||||||| |||||||||||    
T  24252910 aaatgactttttaagtatattgaataattaatgtattcggt 24252950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 430 - 462
Target Start/End: Complemental strand, 30686661 - 30686629
Alignment:
Q  430 tgactttttaaatacattgaataatttatgtat 462  Q
    ||||||||||||||||||||||||| |||||||    
T  30686661 tgactttttaaatacattgaataatgtatgtat 30686629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 37)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 420 - 500
Target Start/End: Original strand, 4698644 - 4698724
Alignment:
Q  420 aagaaacaaatgactttttaaatacattgaataatttatgtattcggtttagaatatacaccaaatacataaattattcaa 500  Q
    ||||||||| ||| |||||| ||||||||||||||||||||||  |||||||| | || |||| |||||||||||||||||    
T  4698644 aagaaacaattgaatttttagatacattgaataatttatgtatctggtttagattctagaccatatacataaattattcaa 4698724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 420 - 500
Target Start/End: Complemental strand, 31240969 - 31240889
Alignment:
Q  420 aagaaacaaatgactttttaaatacattgaataatttatgtattcggtttagaatatacaccaaatacataaattattcaa 500  Q
    ||||||||| | |||||||||||||||||||||| |||||||||  ||||||| | || |||| |||||||||||||||||    
T  31240969 aagaaacaattaactttttaaatacattgaataaattatgtatttagtttagattttaaaccagatacataaattattcaa 31240889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 423 - 500
Target Start/End: Complemental strand, 4698747 - 4698670
Alignment:
Q  423 aaacaaatgactttttaaatacattgaataatttatgtattcggtttagaatatacaccaaatacataaattattcaa 500  Q
    |||||| ||| |||||| ||||||||||||||||||||||  ||| |||||| || |||| |||||||||||||||||    
T  4698747 aaacaattgattttttagatacattgaataatttatgtatatggtctagaatctaaaccagatacataaattattcaa 4698670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 436 - 500
Target Start/End: Original strand, 20114096 - 20114160
Alignment:
Q  436 tttaaatacattgaataatttatgtattcggtttagaatatacaccaaatacataaattattcaa 500  Q
    |||| ||||||||||||||||||||||| ||||||||||||| |||| |||||| | ||||||||    
T  20114096 tttagatacattgaataatttatgtatttggtttagaatatagaccatatacattagttattcaa 20114160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 417 - 489
Target Start/End: Original strand, 16412252 - 16412324
Alignment:
Q  417 tataagaaacaaatgactttttaaatacattgaataatttatgtattcggtttagaatatacaccaaatacat 489  Q
    ||||||||| || |||||||||| || |||||||||||| || |||| ||| ||||||||| |||||||||||    
T  16412252 tataagaaaaaattgactttttagattcattgaataattgatatatttggtctagaatatagaccaaatacat 16412324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 417 - 489
Target Start/End: Complemental strand, 53225774 - 53225702
Alignment:
Q  417 tataagaaacaaatgactttttaaatacattgaataatttatgtattcggtttagaatatacaccaaatacat 489  Q
    ||||||||| || |||||||||| || |||||||||||| ||||||| ||| |||||| || |||||||||||    
T  53225774 tataagaaaaaattgactttttagattcattgaataattaatgtatttggtatagaatgtagaccaaatacat 53225702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 420 - 471
Target Start/End: Original strand, 19485593 - 19485644
Alignment:
Q  420 aagaaacaaatgactttttaaatacattgaataatttatgtattcggtttag 471  Q
    ||||||||| | |||||||||||||||| ||||||||||||||| |||||||    
T  19485593 aagaaacaatttactttttaaatacattaaataatttatgtatttggtttag 19485644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 430 - 497
Target Start/End: Complemental strand, 56216351 - 56216284
Alignment:
Q  430 tgactttttaaatacattgaataatttatgtattcggtttagaatatacaccaaatacataaattatt 497  Q
    |||||||||| |||||||||||||| ||||||||  ||| |||||  | |||||||||||||||||||    
T  56216351 tgactttttagatacattgaataatgtatgtatttagttaagaatccaaaccaaatacataaattatt 56216284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 420 - 500
Target Start/End: Complemental strand, 14785143 - 14785063
Alignment:
Q  420 aagaaacaaatgactttttaaatacattgaataatttatgtattcggtttagaatatacaccaaatacataaattattcaa 500  Q
    ||||||||| | | |||||||||||||||||||| |||||||| |  |||||| | || |||| |||| ||||||||||||    
T  14785143 aagaaacaatttattttttaaatacattgaataaattatgtatccaatttagattttataccatatacttaaattattcaa 14785063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 420 - 500
Target Start/End: Complemental strand, 31854506 - 31854426
Alignment:
Q  420 aagaaacaaatgactttttaaatacattgaataatttatgtattcggtttagaatatacaccaaatacataaattattcaa 500  Q
    ||||||||| | |||||||| ||||||| ||||||||||||||| |||||||  |||  || | ||||||| |||||||||    
T  31854506 aagaaacaatttactttttagatacattaaataatttatgtatttggtttaggttattgactagatacatacattattcaa 31854426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 417 - 489
Target Start/End: Complemental strand, 43117984 - 43117912
Alignment:
Q  417 tataagaaacaaatgactttttaaatacattgaataatttatgtattcggtttagaatatacaccaaatacat 489  Q
    ||||||||| || ||| |||||| || |||||||||||| ||||||| ||| || |||||| |||||||||||    
T  43117984 tataagaaaaaattgattttttacattcattgaataattgatgtatttggtataaaatatagaccaaatacat 43117912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 430 - 497
Target Start/End: Complemental strand, 6246725 - 6246658
Alignment:
Q  430 tgactttttaaatacattgaataatttatgtattcggtttagaatatacaccaaatacataaattatt 497  Q
    |||||||||| ||||||| |||||| |||||||| |||  ||||  || |||||||||||||||||||    
T  6246725 tgactttttagatacattcaataatatatgtatttggtcaagaacctaaaccaaatacataaattatt 6246658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 420 - 471
Target Start/End: Original strand, 31227292 - 31227343
Alignment:
Q  420 aagaaacaaatgactttttaaatacattgaataatttatgtattcggtttag 471  Q
    ||||||||| | |||||||| ||||||| ||||||||||||||| |||||||    
T  31227292 aagaaacaatttactttttagatacattaaataatttatgtatttggtttag 31227343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 445 - 500
Target Start/End: Complemental strand, 36866955 - 36866900
Alignment:
Q  445 attgaataatttatgtattcggtttagaatatacaccaaatacataaattattcaa 500  Q
    ||||||||||||||||| | ||| ||||||||| || |||||||| ||||||||||    
T  36866955 attgaataatttatgtacttggtctagaatatagacaaaatacatcaattattcaa 36866900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 420 - 471
Target Start/End: Complemental strand, 38688038 - 38687987
Alignment:
Q  420 aagaaacaaatgactttttaaatacattgaataatttatgtattcggtttag 471  Q
    ||||||||| | |||||||| ||||||| ||||||||||||||| |||||||    
T  38688038 aagaaacaatttactttttagatacattaaataatttatgtatttggtttag 38687987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 434 - 497
Target Start/End: Complemental strand, 53303849 - 53303786
Alignment:
Q  434 tttttaaatacattgaataatttatgtattcggtttagaatatacaccaaatacataaattatt 497  Q
    |||||| |||||||||||||| ||||||||  ||  ||||| || |||||||||||||||||||    
T  53303849 tttttagatacattgaataatgtatgtatttagtcaagaatctaaaccaaatacataaattatt 53303786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 432 - 471
Target Start/End: Complemental strand, 53621443 - 53621404
Alignment:
Q  432 actttttaaatacattgaataatttatgtattcggtttag 471  Q
    |||||||| ||||||||||||||||||||||| |||||||    
T  53621443 actttttagatacattgaataatttatgtatttggtttag 53621404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 417 - 487
Target Start/End: Original strand, 2643626 - 2643696
Alignment:
Q  417 tataagaaacaaatgactttttaaatacattgaataatttatgtattcggtttagaatatacaccaaatac 487  Q
    ||||||||| || ||||||||||  | |||||||||||||||||| |  || || ||||||||||||||||    
T  2643626 tataagaaataattgactttttagtttcattgaataatttatgtacttagtctaaaatatacaccaaatac 2643696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 417 - 455
Target Start/End: Original strand, 22210807 - 22210845
Alignment:
Q  417 tataagaaacaaatgactttttaaatacattgaataatt 455  Q
    |||||||||||| ||||||||||||| ||||||||||||    
T  22210807 tataagaaacaattgactttttaaattcattgaataatt 22210845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 420 - 462
Target Start/End: Original strand, 39732022 - 39732064
Alignment:
Q  420 aagaaacaaatgactttttaaatacattgaataatttatgtat 462  Q
    ||||||||| |||||||||| | ||||||||||||||||||||    
T  39732022 aagaaacaattgactttttagacacattgaataatttatgtat 39732064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 432 - 497
Target Start/End: Original strand, 2411873 - 2411938
Alignment:
Q  432 actttttaaatacattgaataatttatgtattcggtttagaatatacaccaaatacataaattatt 497  Q
    ||||||||||||||||||||||| |||||||   ||  ||||| || || ||||||||||||||||    
T  2411873 actttttaaatacattgaataatgtatgtatctagtcaagaatctaaactaaatacataaattatt 2411938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 432 - 497
Target Start/End: Original strand, 6246641 - 6246706
Alignment:
Q  432 actttttaaatacattgaataatttatgtattcggtttagaatatacaccaaatacataaattatt 497  Q
    |||||||| ||||||| ||||||||||||||| |||||||  | |  |||||||||||| ||||||    
T  6246641 actttttagatacattaaataatttatgtatttggtttaggttcttgaccaaatacatatattatt 6246706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 423 - 500
Target Start/End: Original strand, 21221141 - 21221218
Alignment:
Q  423 aaacaaatgactttttaaatacattgaataatttatgtattcggtttagaatatacaccaaatacataaattattcaa 500  Q
    |||||| | |||||||| ||||||| ||||||||||||||| |||||||  |||  || | ||||||| |||||||||    
T  21221141 aaacaatttactttttagatacattaaataatttatgtatttggtttaggttattgactagatacatatattattcaa 21221218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 88 - 188
Target Start/End: Complemental strand, 37883310 - 37883209
Alignment:
Q  88 gaagagaagattttaatcctaacgccgtgaaaataacggcagaggaaataagaagaagtttgagagaaagcataatt-atgttgtgttttgagtttgaag 186  Q
    ||||||||| ||| ||||  ||||  ||||||||||| | | ||||||| |  |||||||||||||||| ||||||| |  |||||||| ||||||||||    
T  37883310 gaagagaagttttcaatctcaacgttgtgaaaataacagtaaaggaaatgaagagaagtttgagagaaaacataattgagtttgtgtttagagtttgaag 37883211  T
Q  187 ag 188  Q
    ||    
T  37883210 ag 37883209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 420 - 472
Target Start/End: Complemental strand, 2411967 - 2411915
Alignment:
Q  420 aagaaacaaatgactttttaaatacattgaataatttatgtattcggtttaga 472  Q
    ||||||||| | |||||||| ||||||| |||||||||||||||  |||||||    
T  2411967 aagaaacaatttactttttagatacattaaataatttatgtatttagtttaga 2411915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 423 - 463
Target Start/End: Complemental strand, 15171007 - 15170967
Alignment:
Q  423 aaacaaatgactttttaaatacattgaataatttatgtatt 463  Q
    |||||| | |||||||| |||||||||||||||||||||||    
T  15171007 aaacaatttactttttagatacattgaataatttatgtatt 15170967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 436 - 500
Target Start/End: Original strand, 21229262 - 21229326
Alignment:
Q  436 tttaaatacattgaataatttatgtattcggtttagaatatacaccaaatacataaattattcaa 500  Q
    |||||||||||| ||||||||||||||| |||||||  | |  || ||||||||| |||||||||    
T  21229262 tttaaatacattaaataatttatgtatttggtttaggttcttgactaaatacatacattattcaa 21229326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 432 - 500
Target Start/End: Original strand, 23125679 - 23125747
Alignment:
Q  432 actttttaaatacattgaataatttatgtattcggtttagaatatacaccaaatacataaattattcaa 500  Q
    |||||||| ||||||| ||||||||||||||| |||||||  | |  || ||||||||| |||||||||    
T  23125679 actttttagatacattaaataatttatgtatttggtttaggttcttgactaaatacatacattattcaa 23125747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 417 - 489
Target Start/End: Original strand, 26066387 - 26066459
Alignment:
Q  417 tataagaaacaaatgactttttaaatacattgaataatttatgtattcggtttagaatatacaccaaatacat 489  Q
    ||||||||| || |||||||  | || |||||||||||| |||||| |||| ||||||||| |||| ||||||    
T  26066387 tataagaaataattgactttcaagattcattgaataattgatgtatccggtctagaatatagaccagatacat 26066459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 417 - 489
Target Start/End: Original strand, 30191914 - 30191986
Alignment:
Q  417 tataagaaacaaatgactttttaaatacattgaataatttatgtattcggtttagaatatacaccaaatacat 489  Q
    ||||||||| || ||| |||||| || |||||| ||||| |||||||  || ||||||||| |||||||||||    
T  30191914 tataagaaaaaattgattttttagattcattgagtaattgatgtattttgtctagaatatagaccaaatacat 30191986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 407 - 455
Target Start/End: Original strand, 34021544 - 34021592
Alignment:
Q  407 cgatcttttatataagaaacaaatgactttttaaatacattgaataatt 455  Q
    ||||||| | ||| |||||||| |||| |||||||||||||||||||||    
T  34021544 cgatcttatttatgagaaacaattgacattttaaatacattgaataatt 34021592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 432 - 500
Target Start/End: Original strand, 39877436 - 39877504
Alignment:
Q  432 actttttaaatacattgaataatttatgtattcggtttagaatatacaccaaatacataaattattcaa 500  Q
    |||||||| ||||||| ||||||||||||||| |||||||  |||  || | ||||||| |||||||||    
T  39877436 actttttagatacattaaataatttatgtatttggtttaggttattgactagatacatacattattcaa 39877504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 417 - 489
Target Start/End: Complemental strand, 45828545 - 45828473
Alignment:
Q  417 tataagaaacaaatgactttttaaatacattgaataatttatgtattcggtttagaatatacaccaaatacat 489  Q
    ||||||||| || ||| |||||| || |||||| ||||| ||||||| ||| || |||||| |||||||||||    
T  45828545 tataagaaaaaattgattttttagattcattgagtaattaatgtatttggtctataatataaaccaaatacat 45828473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 432 - 500
Target Start/End: Original strand, 47948972 - 47949040
Alignment:
Q  432 actttttaaatacattgaataatttatgtattcggtttagaatatacaccaaatacataaattattcaa 500  Q
    |||||||| ||||||| ||||||||||||||| |||||||  | |  || ||||||||| |||||||||    
T  47948972 actttttagatacattaaataatttatgtatttggtttaggttcttgactaaatacatacattattcaa 47949040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 417 - 489
Target Start/End: Original strand, 48361070 - 48361142
Alignment:
Q  417 tataagaaacaaatgactttttaaatacattgaataatttatgtattcggtttagaatatacaccaaatacat 489  Q
    ||||||||| |  |||||||||| || |||||| ||||| |||||||  || ||||||||| |||||||||||    
T  48361070 tataagaaaaatttgactttttagattcattgagtaattgatgtattttgtctagaatatagaccaaatacat 48361142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 432 - 500
Target Start/End: Original strand, 56216267 - 56216335
Alignment:
Q  432 actttttaaatacattgaataatttatgtattcggtttagaatatacaccaaatacataaattattcaa 500  Q
    |||||||| ||||||| ||||||||||||||| ||||| || | |  || ||||||||| |||||||||    
T  56216267 actttttagatacattaaataatttatgtatttggtttggattcttaactaaatacatacattattcaa 56216335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 417 - 461
Target Start/End: Complemental strand, 56491202 - 56491158
Alignment:
Q  417 tataagaaacaaatgactttttaaatacattgaataatttatgta 461  Q
    |||||| ||||||||||||||||| | |||||||||||| |||||    
T  56491202 tataagcaacaaatgactttttaagttcattgaataattaatgta 56491158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 420 - 500
Target Start/End: Complemental strand, 26564048 - 26563968
Alignment:
Q  420 aagaaacaaatgactttttaaatacattgaataatttatgtattcggtttagaatatacaccaaatacataaattattcaa 500  Q
    ||||||||| |||||||| | ||||||||||||||||| ||||  ||| |||||| || ||||||||||||| ||||||||    
T  26564048 aagaaacaattgacttttcagatacattgaataatttacgtatctggtctagaatctaaaccaaatacataatttattcaa 26563968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 430 - 500
Target Start/End: Original strand, 22055761 - 22055831
Alignment:
Q  430 tgactttttaaatacattgaataatttatgtattcggtttagaatatacaccaaatacataaattattcaa 500  Q
    |||||||||| ||| |||||||||||||||||||| ||  ||||| || |||||||| |||||||||||||    
T  22055761 tgactttttagatatattgaataatttatgtattcagtaaagaatttaaaccaaataaataaattattcaa 22055831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 415 - 489
Target Start/End: Complemental strand, 29365753 - 29365679
Alignment:
Q  415 tatataagaaacaaatgactttttaaatacattgaataatttatgtattcggtttagaatatacaccaaatacat 489  Q
    ||||||||||| || |||||||||| || |||||| ||||| ||||||| ||| ||||||||| | |||||||||    
T  29365753 tatataagaaaaaattgactttttagattcattgagtaattaatgtatttggtatagaatatagatcaaatacat 29365679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 420 - 472
Target Start/End: Original strand, 7463470 - 7463522
Alignment:
Q  420 aagaaacaaatgactttttaaatacattgaataatttatgtattcggtttaga 472  Q
    ||||||||| | ||||||||||||||||  |||||||||||||| ||||||||    
T  7463470 aagaaacaatttactttttaaatacattacataatttatgtatttggtttaga 7463522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 415 - 455
Target Start/End: Original strand, 19512747 - 19512787
Alignment:
Q  415 tatataagaaacaaatgactttttaaatacattgaataatt 455  Q
    |||||||||||||| ||||||||||||| ||||||||||||    
T  19512747 tatataagaaacaattgactttttaaattcattgaataatt 19512787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 432 - 500
Target Start/End: Original strand, 26563954 - 26564022
Alignment:
Q  432 actttttaaatacattgaataatttatgtattcggtttagaatatacaccaaatacataaattattcaa 500  Q
    |||||||| ||| ||||||||| ||||||||| |||||||| | || |||| |||| ||||||||||||    
T  26563954 actttttagatatattgaataaattatgtatttggtttagattctagaccagatacgtaaattattcaa 26564022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 430 - 497
Target Start/End: Complemental strand, 7107747 - 7107680
Alignment:
Q  430 tgactttttaaatacattgaataatttatgtattcggtttagaatatacaccaaatacataaattatt 497  Q
    |||||||||| ||||||||||||||||||||||   ||  | ||| || |||||||||||||||||||    
T  7107747 tgactttttagatacattgaataatttatgtatctagtcaaaaatctaaaccaaatacataaattatt 7107680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 430 - 497
Target Start/End: Original strand, 23248699 - 23248766
Alignment:
Q  430 tgactttttaaatacattgaataatttatgtattcggtttagaatatacaccaaatacataaattatt 497  Q
    |||||||||| |||||||||||||| ||||||||  ||  ||||  || |||||||||||||||||||    
T  23248699 tgactttttagatacattgaataatatatgtatttagtcaagaacctaaaccaaatacataaattatt 23248766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 430 - 497
Target Start/End: Original strand, 34281700 - 34281767
Alignment:
Q  430 tgactttttaaatacattgaataatttatgtattcggtttagaatatacaccaaatacataaattatt 497  Q
    |||||||||| |||||||||||||| ||||||||  ||  ||||  || |||||||||||||||||||    
T  34281700 tgactttttacatacattgaataatgtatgtatttagtcaagaacctaaaccaaatacataaattatt 34281767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 430 - 497
Target Start/End: Original strand, 46449809 - 46449876
Alignment:
Q  430 tgactttttaaatacattgaataatttatgtattcggtttagaatatacaccaaatacataaattatt 497  Q
    |||||||||| |||||||||||||||||||||||   || | ||| || |||||||| ||||||||||    
T  46449809 tgactttttagatacattgaataatttatgtatttaattaaaaatctaaaccaaatatataaattatt 46449876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 434 - 500
Target Start/End: Original strand, 7107665 - 7107731
Alignment:
Q  434 tttttaaatacattgaataatttatgtattcggtttagaatatacaccaaatacataaattattcaa 500  Q
    |||||| ||||||| ||||||||||||||| |||||||| | |  || | |||||||||||||||||    
T  7107665 tttttagatacattaaataatttatgtatttggtttagatttttgactagatacataaattattcaa 7107731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 430 - 472
Target Start/End: Complemental strand, 18672209 - 18672167
Alignment:
Q  430 tgactttttaaatacattgaataatttatgtattcggtttaga 472  Q
    |||| ||||| |||||||||||||||||||||| |||||||||    
T  18672209 tgacattttagatacattgaataatttatgtatccggtttaga 18672167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 434 - 500
Target Start/End: Complemental strand, 46449891 - 46449825
Alignment:
Q  434 tttttaaatacattgaataatttatgtattcggtttagaatatacaccaaatacataaattattcaa 500  Q
    |||||||||||||| |||||||||| |||| |||||||| | |  |  |||||||||||||||||||    
T  46449891 tttttaaatacattaaataatttatatatttggtttagatttttaattaaatacataaattattcaa 46449825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 423 - 500
Target Start/End: Complemental strand, 19979618 - 19979541
Alignment:
Q  423 aaacaaatgactttttaaatacattgaataatttatgtattcggtttagaatatacaccaaatacataaattattcaa 500  Q
    |||||| | |||||||| ||||||| ||||||||||||||| |||||||  | |  || ||||||||| |||||||||    
T  19979618 aaacaatttactttttagatacattaaataatttatgtatttggtttaggttcttgactaaatacatacattattcaa 19979541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 410 - 462
Target Start/End: Original strand, 16861523 - 16861575
Alignment:
Q  410 tcttttatataagaaacaaatgactttttaaatacattgaataatttatgtat 462  Q
    |||| ||||||| |||||| |||||||||| || |||||||||||| ||||||    
T  16861523 tcttatatataaaaaacaattgactttttagattcattgaataattgatgtat 16861575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 432 - 500
Target Start/End: Complemental strand, 23248783 - 23248715
Alignment:
Q  432 actttttaaatacattgaataatttatgtattcggtttagaatatacaccaaatacataaattattcaa 500  Q
    |||||||| ||||||| ||||||||||||||| |||||||  | |  || ||||||||| |||||||||    
T  23248783 actttttagatacattaaataatttatgtatttggtttaggttcttgactaaatacatatattattcaa 23248715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 432 - 500
Target Start/End: Complemental strand, 34281784 - 34281716
Alignment:
Q  432 actttttaaatacattgaataatttatgtattcggtttagaatatacaccaaatacataaattattcaa 500  Q
    |||||||| ||||||| ||||||||||||||| |||||||  | |  || ||||||||| |||||||||    
T  34281784 actttttagatacattaaataatttatgtatttggtttaggttcttgactaaatacatacattattcaa 34281716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 417 - 489
Target Start/End: Complemental strand, 36245506 - 36245434
Alignment:
Q  417 tataagaaacaaatgactttttaaatacattgaataatttatgtattcggtttagaatatacaccaaatacat 489  Q
    ||||||||| || |||||||||| || |||||| ||||| ||||||   || ||||||||| |||||||||||    
T  36245506 tataagaaaaaattgactttttagattcattgagtaattgatgtatcttgtctagaatatagaccaaatacat 36245434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 432 - 500
Target Start/End: Complemental strand, 183907 - 183839
Alignment:
Q  432 actttttaaatacattgaataatttatgtattcggtttagaatatacaccaaatacataaattattcaa 500  Q
    |||||||||||| ||||||||||||||||||   ||||||| | |  ||||||||||||||||||||||    
T  183907 actttttaaatatattgaataatttatgtatcaagtttagatttttgaccaaatacataaattattcaa 183839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 435 - 500
Target Start/End: Original strand, 183828 - 183893
Alignment:
Q  435 ttttaaatacattgaataatttatgtattcggtttagaatatacaccaaatacataaattattcaa 500  Q
    ||||||||||||||||||||||||||||| |||  | ||| || ||   |||||||||||||||||    
T  183828 ttttaaatacattgaataatttatgtatttggtcaaaaatctaaacttgatacataaattattcaa 183893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 436 - 500
Target Start/End: Complemental strand, 10396903 - 10396839
Alignment:
Q  436 tttaaatacattgaataatttatgtattcggtttagaatatacaccaaatacataaattattcaa 500  Q
    |||| |||||||||| |||||||||||| ||||||||||||| |||| |||||| | ||||||||    
T  10396903 tttagatacattgaacaatttatgtatttggtttagaatatagaccatatacattagttattcaa 10396839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 417 - 489
Target Start/End: Original strand, 10839781 - 10839853
Alignment:
Q  417 tataagaaacaaatgactttttaaatacattgaataatttatgtattcggtttagaatatacaccaaatacat 489  Q
    ||||||||| || |||||||||| || |||||||||||| ||||| | ||| ||||||||| |||||||||||    
T  10839781 tataagaaaaaattgactttttagattcattgaataattaatgtacttggtatagaatatagaccaaatacat 10839853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 417 - 500
Target Start/End: Complemental strand, 6354777 - 6354694
Alignment:
Q  417 tataagaaacaaatgactttttaaatacattgaataatttatgtattcggtttagaatatacaccaaatacataaattattcaa 500  Q
    ||||||||| || | | |||||| || |||||||||||||||||||||| | ||||||||| | || |||||| ||||||||||    
T  6354777 tataagaaataattaattttttagattcattgaataatttatgtattcgatctagaatatatatcatatacattaattattcaa 6354694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 433 - 497
Target Start/End: Complemental strand, 7668305 - 7668241
Alignment:
Q  433 ctttttaaatacattgaataatttatgtattcggtttagaatatacaccaaatacataaattatt 497  Q
    |||||||||||||||||||||| ||||||||  ||  ||||  || |||||||||||||||||||    
T  7668305 ctttttaaatacattgaataatgtatgtatttagtcaagaacctaaaccaaatacataaattatt 7668241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 423 - 471
Target Start/End: Complemental strand, 43295187 - 43295139
Alignment:
Q  423 aaacaaatgactttttaaatacattgaataatttatgtattcggtttag 471  Q
    |||||||| |||||||| ||||||| ||||||||||||||| |||||||    
T  43295187 aaacaaataactttttatatacattaaataatttatgtatttggtttag 43295139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 432 - 471
Target Start/End: Complemental strand, 2229185 - 2229146
Alignment:
Q  432 actttttaaatacattgaataatttatgtattcggtttag 471  Q
    |||||||| ||||||||||||||||||||||| |||||||    
T  2229185 actttttagatacattgaataatttatgtatttggtttag 2229146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 420 - 471
Target Start/End: Original strand, 22781903 - 22781954
Alignment:
Q  420 aagaaacaaatgactttttaaatacattgaataatttatgtattcggtttag 471  Q
    ||||||||| | |||||||| ||||||| ||||||||||||||| |||||||    
T  22781903 aagaaacaatttactttttagatacattaaataatttatgtatttggtttag 22781954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 430 - 497
Target Start/End: Complemental strand, 25848084 - 25848017
Alignment:
Q  430 tgactttttaaatacattgaataatttatgtattcggtttagaatatacaccaaatacataaattatt 497  Q
    |||||||||| |||||||||||||| ||||||||  ||  ||||  || |||||||||||||||||||    
T  25848084 tgactttttagatacattgaataatgtatgtatttagtcaagaacctaaaccaaatacataaattatt 25848017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 430 - 497
Target Start/End: Original strand, 37564662 - 37564729
Alignment:
Q  430 tgactttttaaatacattgaataatttatgtattcggtttagaatatacaccaaatacataaattatt 497  Q
    ||||||||||||||||||||||||| |||| ||   ||| ||||  || |||||||||||||||||||    
T  37564662 tgactttttaaatacattgaataatgtatgcatctagttaagaacctaaaccaaatacataaattatt 37564729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 432 - 471
Target Start/End: Complemental strand, 37564746 - 37564707
Alignment:
Q  432 actttttaaatacattgaataatttatgtattcggtttag 471  Q
    |||||||||||||||| ||||||||||||||| |||||||    
T  37564746 actttttaaatacattaaataatttatgtatttggtttag 37564707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 417 - 500
Target Start/End: Original strand, 41915612 - 41915695
Alignment:
Q  417 tataagaaacaaatgactttttaaatacattgaataatttatgtattcggtttagaatatacaccaaatacataaattattcaa 500  Q
    ||||||| |||| | | |||||| ||||||| ||||||||||||||| |||||||| |||  || | ||||||| |||||||||    
T  41915612 tataagagacaatttaatttttagatacattaaataatttatgtatttggtttagattattgactagatacatacattattcaa 41915695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 432 - 471
Target Start/End: Original strand, 43135077 - 43135116
Alignment:
Q  432 actttttaaatacattgaataatttatgtattcggtttag 471  Q
    |||||||| ||||||||||||||||||||||| |||||||    
T  43135077 actttttagatacattgaataatttatgtatttggtttag 43135116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 434 - 472
Target Start/End: Complemental strand, 3799829 - 3799791
Alignment:
Q  434 tttttaaatacattgaataatttatgtattcggtttaga 472  Q
    |||||||||||||| ||||||||||||||| ||||||||    
T  3799829 tttttaaatacattaaataatttatgtatttggtttaga 3799791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 434 - 500
Target Start/End: Complemental strand, 24255984 - 24255918
Alignment:
Q  434 tttttaaatacattgaataatttatgtattcggtttagaatatacaccaaatacataaattattcaa 500  Q
    |||||||||| |||||||||  |||||||| |||||||| | || |||| |||| ||||||||||||    
T  24255984 tttttaaataaattgaataaagtatgtatttggtttagattctagaccagatacgtaaattattcaa 24255918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 417 - 463
Target Start/End: Original strand, 44329171 - 44329217
Alignment:
Q  417 tataagaaacaaatgactttttaaatacattgaataatttatgtatt 463  Q
    |||||| || |||||| |||||||||||||||||||||| |||||||    
T  44329171 tataagcaaaaaatgattttttaaatacattgaataattaatgtatt 44329217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 417 - 462
Target Start/End: Complemental strand, 43932179 - 43932134
Alignment:
Q  417 tataagaaacaaatgactttttaaatacattgaataatttatgtat 462  Q
    |||||||||||| |||||||||| || |||||||||||| ||||||    
T  43932179 tataagaaacaattgactttttagattcattgaataattaatgtat 43932134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 433 - 497
Target Start/End: Original strand, 3799750 - 3799814
Alignment:
Q  433 ctttttaaatacattgaataatttatgtattcggtttagaatatacaccaaatacataaattatt 497  Q
    ||||||| |||||||||||||| |||||||   ||  ||||| || |||||||||||||||||||    
T  3799750 ctttttagatacattgaataatgtatgtatctagtcaagaatctaaaccaaatacataaattatt 3799814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 427 - 467
Target Start/End: Complemental strand, 14113329 - 14113289
Alignment:
Q  427 aaatgactttttaaatacattgaataatttatgtattcggt 467  Q
    ||||||||||||| ||||||||||||||| |||||| ||||    
T  14113329 aaatgactttttagatacattgaataattaatgtatacggt 14113289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 432 - 500
Target Start/End: Original strand, 25848000 - 25848068
Alignment:
Q  432 actttttaaatacattgaataatttatgtattcggtttagaatatacaccaaatacataaattattcaa 500  Q
    |||||||| ||||||| ||||||||||||||| |||||||  | |  || ||||||||| |||||||||    
T  25848000 actttttagatacattaaataatttatgtatttggtttaggttcttgactaaatacatacattattcaa 25848068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 432 - 472
Target Start/End: Complemental strand, 32159149 - 32159109
Alignment:
Q  432 actttttaaatacattgaataatttatgtattcggtttaga 472  Q
    |||||||| ||||||| ||||||||||||||| ||||||||    
T  32159149 actttttagatacattaaataatttatgtatttggtttaga 32159109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 434 - 462
Target Start/End: Complemental strand, 33837693 - 33837665
Alignment:
Q  434 tttttaaatacattgaataatttatgtat 462  Q
    |||||||||||||||||||||||||||||    
T  33837693 tttttaaatacattgaataatttatgtat 33837665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 433 - 497
Target Start/End: Complemental strand, 40834250 - 40834186
Alignment:
Q  433 ctttttaaatacattgaataatttatgtattcggtttagaatatacaccaaatacataaattatt 497  Q
    ||||||| |||||||||||||| ||||||||  ||  ||||  || |||||||||||||||||||    
T  40834250 ctttttagatacattgaataatgtatgtatttagtcaagaacctaaaccaaatacataaattatt 40834186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 420 - 500
Target Start/End: Complemental strand, 38393882 - 38393802
Alignment:
Q  420 aagaaacaaatgactttttaaatacattgaataatttatgtattcggtttagaatatacaccaaatacataaattattcaa 500  Q
    ||||||||| |||||||||||||| ||||||||||||||| ||| | |||||| | |  || | |||||||||||||||||    
T  38393882 aagaaacaattgactttttaaatatattgaataatttatgaatttgatttagattcttgactatatacataaattattcaa 38393802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 417 - 471
Target Start/End: Original strand, 23411183 - 23411237
Alignment:
Q  417 tataagaaacaaatgactttttaaatacattgaataatttatgtattcggtttag 471  Q
    ||||||| |||||| |||||||| ||||||| ||||||||||||||| |||||||    
T  23411183 tataagatacaaattactttttagatacattaaataatttatgtatttggtttag 23411237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 420 - 497
Target Start/End: Original strand, 42311831 - 42311908
Alignment:
Q  420 aagaaacaaatgactttttaaatacattgaataatttatgtattcggtttagaatatacaccaaatacataaattatt 497  Q
    |||||| || ||||||||||||||||||||||||| ||||||||  ||  | ||  || |||||||||||||||||||    
T  42311831 aagaaaaaattgactttttaaatacattgaataatgtatgtatttagtcaaaaacttaaaccaaatacataaattatt 42311908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 432 - 500
Target Start/End: Original strand, 26898224 - 26898292
Alignment:
Q  432 actttttaaatacattgaataatttatgtattcggtttagaatatacaccaaatacataaattattcaa 500  Q
    |||||||||||||||| ||||||||||||||| |||||||  | |  || ||||||||| |||||||||    
T  26898224 actttttaaatacattaaataatttatgtatttggtttaggttcttgactaaatacatacattattcaa 26898292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 417 - 489
Target Start/End: Original strand, 38394446 - 38394518
Alignment:
Q  417 tataagaaacaaatgactttttaaatacattgaataatttatgtattcggtttagaatatacaccaaatacat 489  Q
    ||||||||| || |||||||||| || |||||||||||| ||||| | ||| |||||| || |||||||||||    
T  38394446 tataagaaaaaattgactttttagattcattgaataattaatgtacttggtatagaatgtagaccaaatacat 38394518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 430 - 462
Target Start/End: Complemental strand, 42896129 - 42896097
Alignment:
Q  430 tgactttttaaatacattgaataatttatgtat 462  Q
    |||||||||||||||||||||||||||||||||    
T  42896129 tgactttttaaatacattgaataatttatgtat 42896097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 430 - 497
Target Start/End: Complemental strand, 2825977 - 2825910
Alignment:
Q  430 tgactttttaaatacattgaataatttatgtattcggtttagaatatacaccaaatacataaattatt 497  Q
    |||||||||| |||||||||||||| |||||||   ||| ||||  || |||||||||||||||||||    
T  2825977 tgactttttagatacattgaataatgtatgtatctagttaagaacctaaaccaaatacataaattatt 2825910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 430 - 497
Target Start/End: Complemental strand, 7750035 - 7749968
Alignment:
Q  430 tgactttttaaatacattgaataatttatgtattcggtttagaatatacaccaaatacataaattatt 497  Q
    |||||||||| |||||||||||||| |||||||   ||  ||||| || |||||||||||||||||||    
T  7750035 tgactttttagatacattgaataatgtatgtatctagtcaagaatctaaaccaaatacataaattatt 7749968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 420 - 471
Target Start/End: Complemental strand, 21610428 - 21610377
Alignment:
Q  420 aagaaacaaatgactttttaaatacattgaataatttatgtattcggtttag 471  Q
    ||||||||| | |||||||| ||||||| ||||||||||||||| |||||||    
T  21610428 aagaaacaattaactttttatatacattaaataatttatgtatttggtttag 21610377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 432 - 471
Target Start/End: Original strand, 25027727 - 25027766
Alignment:
Q  432 actttttaaatacattgaataatttatgtattcggtttag 471  Q
    |||||||| ||||||||||||||||||||||| |||||||    
T  25027727 actttttagatacattgaataatttatgtatttggtttag 25027766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 432 - 471
Target Start/End: Original strand, 29374203 - 29374242
Alignment:
Q  432 actttttaaatacattgaataatttatgtattcggtttag 471  Q
    |||||||| ||||||||||||||||||||||| |||||||    
T  29374203 actttttagatacattgaataatttatgtatttggtttag 29374242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 420 - 471
Target Start/End: Complemental strand, 31803085 - 31803034
Alignment:
Q  420 aagaaacaaatgactttttaaatacattgaataatttatgtattcggtttag 471  Q
    ||||||||| | |||||||| ||||||| ||||||||||||||| |||||||    
T  31803085 aagaaacaatttactttttagatacattaaataatttatgtatttggtttag 31803034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 432 - 471
Target Start/End: Complemental strand, 37699895 - 37699856
Alignment:
Q  432 actttttaaatacattgaataatttatgtattcggtttag 471  Q
    |||||||| ||||||||||||||||||||||| |||||||    
T  37699895 actttttagatacattgaataatttatgtatttggtttag 37699856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 417 - 455
Target Start/End: Complemental strand, 6604452 - 6604414
Alignment:
Q  417 tataagaaacaaatgactttttaaatacattgaataatt 455  Q
    |||||||||||| ||||||||||||| ||||||||||||    
T  6604452 tataagaaacaattgactttttaaattcattgaataatt 6604414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 420 - 470
Target Start/End: Complemental strand, 18353335 - 18353285
Alignment:
Q  420 aagaaacaaatgactttttaaatacattgaataatttatgtattcggttta 470  Q
    ||||||||| | |||||||| ||||||| ||||||||||||||| ||||||    
T  18353335 aagaaacaatttactttttagatacattaaataatttatgtatttggttta 18353285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 417 - 463
Target Start/End: Complemental strand, 36417177 - 36417131
Alignment:
Q  417 tataagaaacaaatgactttttaaatacattgaataatttatgtatt 463  Q
    |||||||||||| | |||||||| ||||||| |||||||||||||||    
T  36417177 tataagaaacaatttactttttagatacattaaataatttatgtatt 36417131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 423 - 468
Target Start/End: Original strand, 41815209 - 41815254
Alignment:
Q  423 aaacaaatgactttttaaatacattgaataatttatgtattcggtt 468  Q
    |||||| | |||||||||||||||| ||||||||||||||| ||||    
T  41815209 aaacaatttactttttaaatacattaaataatttatgtatttggtt 41815254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 423 - 471
Target Start/End: Complemental strand, 904090 - 904042
Alignment:
Q  423 aaacaaatgactttttaaatacattgaataatttatgtattcggtttag 471  Q
    |||||| | |||||||| ||||||| ||||||||||||||| |||||||    
T  904090 aaacaatttactttttagatacattaaataatttatgtatttggtttag 904042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 430 - 462
Target Start/End: Complemental strand, 7053765 - 7053733
Alignment:
Q  430 tgactttttaaatacattgaataatttatgtat 462  Q
    ||||||||||||||||||||||||| |||||||    
T  7053765 tgactttttaaatacattgaataatgtatgtat 7053733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 432 - 500
Target Start/End: Original strand, 21032561 - 21032629
Alignment:
Q  432 actttttaaatacattgaataatttatgtattcggtttagaatatacaccaaatacataaattattcaa 500  Q
    |||||||| ||||||||||||||| |||||||| || || |||| | || | |||||| ||||||||||    
T  21032561 actttttatatacattgaataattaatgtattcagtctataataaagactagatacattaattattcaa 21032629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 432 - 472
Target Start/End: Complemental strand, 21090491 - 21090451
Alignment:
Q  432 actttttaaatacattgaataatttatgtattcggtttaga 472  Q
    |||||||||||||||| |||||| |||||||| ||||||||    
T  21090491 actttttaaatacattaaataatgtatgtatttggtttaga 21090451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 430 - 462
Target Start/End: Original strand, 36417078 - 36417110
Alignment:
Q  430 tgactttttaaatacattgaataatttatgtat 462  Q
    ||||||||||||||||||||||||| |||||||    
T  36417078 tgactttttaaatacattgaataatgtatgtat 36417110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 405 - 500
Target Start/End: Original strand, 38393760 - 38393856
Alignment:
Q  405 tccgatcttttatataagaaacaaatgactttttaaa-tacattgaataatttatgtattcggtttagaatatacaccaaatacataaattattcaa 500  Q
    ||||||||| | ||||| ||| |||| | |||||||| |||||||||||||||||||||   ||  ||||| || | ||||| ||||||||||||||    
T  38393760 tccgatcttatttataaaaaaaaaattaatttttaaaatacattgaataatttatgtatatagtcaagaatctaaatcaaattcataaattattcaa 38393856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 398 - 474
Target Start/End: Complemental strand, 28359071 - 28358995
Alignment:
Q  398 tattctttccgatcttttatataagaaacaaatgactttttaaatacattgaataatttatgtattcggtttagaat 474  Q
    ||||||||||| || | | ||||||||| |||||| ||||||||| |||||||||||| ||||||| ||| ||||||    
T  28359071 tattctttccggtcctatttataagaaaaaaatgaatttttaaattcattgaataattaatgtatttggtctagaat 28358995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 417 - 463
Target Start/End: Original strand, 25021249 - 25021295
Alignment:
Q  417 tataagaaacaaatgactttttaaatacattgaataatttatgtatt 463  Q
    ||||||||||||||||||||||| || |||||||||||| |||||||    
T  25021249 tataagaaacaaatgactttttagattcattgaataattgatgtatt 25021295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 430 - 500
Target Start/End: Complemental strand, 38830600 - 38830530
Alignment:
Q  430 tgactttttaaatacattgaataatttatgtattcggtttagaatatacaccaaatacataaattattcaa 500  Q
    ||||||||||||||||||||||||| |||||||   ||  ||||  || ||||||||||||||||||||||    
T  38830600 tgactttttaaatacattgaataatatatgtatctagtcaagaacctaaaccaaatacataaattattcaa 38830530  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 417 - 462
Target Start/End: Complemental strand, 27423037 - 27422992
Alignment:
Q  417 tataagaaacaaatgactttttaaatacattgaataatttatgtat 462  Q
    ||||| || ||| |||||||||||||||||||||||||||||||||    
T  27423037 tataaaaatcaattgactttttaaatacattgaataatttatgtat 27422992  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 433 - 497
Target Start/End: Original strand, 7796124 - 7796188
Alignment:
Q  433 ctttttaaatacattgaataatttatgtattcggtttagaatatacaccaaatacataaattatt 497  Q
    ||||||| |||||||||||||| ||||||||  ||  ||||| || |||||||||||||||||||    
T  7796124 ctttttagatacattgaataatgtatgtatttagtcaagaatctaaaccaaatacataaattatt 7796188  T

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Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 420 - 500
Target Start/End: Complemental strand, 25021358 - 25021278
Alignment:
Q  420 aagaaacaaatgactttttaaatacattgaataatttatgtattcggtttagaatatacaccaaatacataaattattcaa 500  Q
    ||||||||| |||||||||| ||  ||||||||||| |||||| ||| |||||||||   | |||||||| ||||||||||    
T  25021358 aagaaacaattgactttttagatttattgaataattgatgtatccggattagaatatcagctaaatacatcaattattcaa 25021278  T

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Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 420 - 472
Target Start/End: Original strand, 28989293 - 28989345
Alignment:
Q  420 aagaaacaaatgactttttaaatacattgaataatttatgtattcggtttaga 472  Q
    ||||||||| | |||||||| ||||||| ||||||||||||||| ||||||||    
T  28989293 aagaaacaatttactttttagatacattaaataatttatgtatttggtttaga 28989345  T

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Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 432 - 471
Target Start/End: Original strand, 14281623 - 14281662
Alignment:
Q  432 actttttaaatacattgaataatttatgtattcggtttag 471  Q
    |||||||| ||||||||||||||||||||||| |||||||    
T  14281623 actttttagatacattgaataatttatgtatttggtttag 14281662  T

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Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 432 - 471
Target Start/End: Original strand, 23398113 - 23398152
Alignment:
Q  432 actttttaaatacattgaataatttatgtattcggtttag 471  Q
    |||||||| ||||||||||||||||||||||| |||||||    
T  23398113 actttttagatacattgaataatttatgtatttggtttag 23398152  T

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Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 417 - 500
Target Start/End: Complemental strand, 26760303 - 26760220
Alignment:
Q  417 tataagaaacaaatgactttttaaatacattgaataatttatgtattcggtttagaatatacaccaaatacataaattattcaa 500  Q
    ||||||||| || ||| ||||||||| |||||| | ||| ||||| | ||| ||||||||| ||||||||||| | ||||||||    
T  26760303 tataagaaaaaattgattttttaaattcattgagtcattaatgtacttggtatagaatatagaccaaatacatcatttattcaa 26760220  T

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Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 417 - 500
Target Start/End: Original strand, 26924231 - 26924314
Alignment:
Q  417 tataagaaacaaatgactttttaaatacattgaataatttatgtattcggtttagaatatacaccaaatacataaattattcaa 500  Q
    ||||||||| |  ||||||||||||| |||||| | ||| ||||| | ||| ||||||||| ||||||||||| | ||||||||    
T  26924231 tataagaaaaagttgactttttaaattcattgagtcattaatgtacttggtatagaatatagaccaaatacatcatttattcaa 26924314  T

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Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 432 - 471
Target Start/End: Original strand, 38830516 - 38830555
Alignment:
Q  432 actttttaaatacattgaataatttatgtattcggtttag 471  Q
    |||||||| ||||||||||||||||||||||| |||||||    
T  38830516 actttttagatacattgaataatttatgtatttggtttag 38830555  T

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Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 430 - 497
Target Start/End: Original strand, 40161204 - 40161271
Alignment:
Q  430 tgactttttaaatacattgaataatttatgtattcggtttagaatatacaccaaatacataaattatt 497  Q
    ||||||||||||||||||||||||| ||||||| | ||  | ||  || |||||||||||||||||||    
T  40161204 tgactttttaaatacattgaataatgtatgtatccagtcaaaaacctaaaccaaatacataaattatt 40161271  T

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Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 434 - 500
Target Start/End: Complemental strand, 7796203 - 7796137
Alignment:
Q  434 tttttaaatacattgaataatttatgtattcggtttagaatatacaccaaatacataaattattcaa 500  Q
    |||||| ||||||| ||||||||||||||| |||||||| | |  || ||||||||| |||||||||    
T  7796203 tttttagatacattaaataatttatgtatttggtttagattcttgactaaatacatacattattcaa 7796137  T

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Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 417 - 471
Target Start/End: Complemental strand, 9302049 - 9301995
Alignment:
Q  417 tataagaaacaaatgactttttaaatacattgaataatttatgtattcggtttag 471  Q
    ||||||| |||| | |||||||| ||||||| ||||||||||||||| |||||||    
T  9302049 tataagagacaatttactttttagatacattaaataatttatgtatttggtttag 9301995  T

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Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 420 - 469
Target Start/End: Complemental strand, 28359198 - 28359149
Alignment:
Q  420 aagaaacaaatgactttttaaatacattgaataatttatgtattcggttt 469  Q
    ||||||||| | |||||||| ||||||| ||||||||||||||| |||||    
T  28359198 aagaaacaatttactttttagatacattaaataatttatgtatttggttt 28359149  T

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Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 409 - 489
Target Start/End: Original strand, 34332486 - 34332566
Alignment:
Q  409 atcttttatataagaaacaaatgactttttaaatacattgaataatttatgtattcggtttagaatatacaccaaatacat 489  Q
    ||||| |||||||||||    |||||||||| || |||||| ||||| |||||||  || ||||||||| |||||||||||    
T  34332486 atcttatatataagaaaactttgactttttagattcattgagtaattgatgtattttgtctagaatatagaccaaatacat 34332566  T

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Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 417 - 489
Target Start/End: Complemental strand, 50155428 - 50155356
Alignment:
Q  417 tataagaaacaaatgactttttaaatacattgaataatttatgtattcggtttagaatatacaccaaatacat 489  Q
    ||||||||| |  |||||||||| || |||||| ||||| ||||||| ||| || |||||| |||||||||||    
T  50155428 tataagaaaaagttgactttttagattcattgagtaattgatgtatttggtctataatatagaccaaatacat 50155356  T

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Target: scaffold0025 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 444 - 500
Target Start/End: Complemental strand, 66053 - 65997
Alignment:
Q  444 cattgaataatttatgtattcggtttagaatatacaccaaatacataaattattcaa 500  Q
    ||||||||||||||||||||||||||| |||||| || | |||||| |||| |||||    
T  66053 cattgaataatttatgtattcggtttaaaatatagactagatacatgaatttttcaa 65997  T

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Target: scaffold0005 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 420 - 500
Target Start/End: Original strand, 54587 - 54667
Alignment:
Q  420 aagaaacaaatgactttttaaatacattgaataatttatgtattcggtttagaatatacaccaaatacataaattattcaa 500  Q
    ||||||||| | | |||||||||||||||||||| |||||||| |  |||||| | || |||| |||| ||||||||||||    
T  54587 aagaaacaatttattttttaaatacattgaataaattatgtatccaatttagattttataccatatacttaaattattcaa 54667  T

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Target: scaffold0002 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 420 - 500
Target Start/End: Complemental strand, 492432 - 492352
Alignment:
Q  420 aagaaacaaatgactttttaaatacattgaataatttatgtattcggtttagaatatacaccaaatacataaattattcaa 500  Q
    ||||||||| | |||||||| ||||||| ||||||||||||||| |||||||  | |  || ||||||||| |||||||||    
T  492432 aagaaacaatttactttttagatacattaaataatttatgtatttggtttaggttcttgactaaatacatacattattcaa 492352  T

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Target: scaffold0002; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 423 - 467
Target Start/End: Complemental strand, 423372 - 423328
Alignment:
Q  423 aaacaaatgactttttaaatacattgaataatttatgtattcggt 467  Q
    |||||| |||||||||| || |||||||||||| |||||||||||    
T  423372 aaacaattgactttttagattcattgaataattgatgtattcggt 423328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0123 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 420 - 471
Target Start/End: Original strand, 29265 - 29316
Alignment:
Q  420 aagaaacaaatgactttttaaatacattgaataatttatgtattcggtttag 471  Q
    ||||||||| | |||||||| ||||||| ||||||||||||||| |||||||    
T  29265 aagaaacaatttactttttagatacattaaataatttatgtatttggtttag 29316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 430 - 497
Target Start/End: Original strand, 77376 - 77443
Alignment:
Q  430 tgactttttaaatacattgaataatttatgtattcggtttagaatatacaccaaatacataaattatt 497  Q
    |||||||| | ||||||||||||||||||||||   ||  ||||| || |||||||||||||||||||    
T  77376 tgacttttcagatacattgaataatttatgtatgtagtcaagaatctaaaccaaatacataaattatt 77443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 434 - 500
Target Start/End: Complemental strand, 77458 - 77392
Alignment:
Q  434 tttttaaatacattgaataatttatgtattcggtttagaatatacaccaaatacataaattattcaa 500  Q
    |||||| ||||||| ||||||||||||||| |||||||| | |  || | |||||||||||||||||    
T  77458 tttttagatacattaaataatttatgtatttggtttagattcttgactacatacataaattattcaa 77392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 430 - 496
Target Start/End: Original strand, 3662 - 3728
Alignment:
Q  430 tgactttttaaatacattgaataatttatgtattcggtttagaatatacaccaaatacataaattat 496  Q
    |||||||||| |||||||||||||| ||||||||  ||  ||||  || ||||||||||||||||||    
T  3662 tgactttttagatacattgaataatgtatgtatttagtcaagaacctaaaccaaatacataaattat 3728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 422 - 472
Target Start/End: Original strand, 282723 - 282773
Alignment:
Q  422 gaaacaaatgactttttaaatacattgaataatttatgtattcggtttaga 472  Q
    ||||||| ||||||||||  ||||||||||||||||||||||  |||||||    
T  282723 gaaacaattgactttttacctacattgaataatttatgtattttgtttaga 282773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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