View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17555_low_2 (Length: 563)

Name: NF17555_low_2
Description: NF17555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17555_low_2
NF17555_low_2
[»] chr4 (4 HSPs)
chr4 (8-505)||(42677017-42677514)
chr4 (266-357)||(52835029-52835123)
chr4 (522-555)||(42677520-42677553)
chr4 (216-258)||(52834967-52835009)
[»] chr1 (4 HSPs)
chr1 (313-399)||(48968805-48968887)
chr1 (216-262)||(48969535-48969581)
chr1 (139-211)||(48969712-48969784)
chr1 (522-555)||(15496097-15496130)
[»] chr2 (3 HSPs)
chr2 (522-555)||(6705719-6705752)
chr2 (522-555)||(40900403-40900436)
chr2 (446-494)||(40900464-40900512)


Alignment Details
Target: chr4 (Bit Score: 450; Significance: 0; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 8 - 505
Target Start/End: Original strand, 42677017 - 42677514
Alignment:
Q  8 ccaagaatatcaaagcgaatatgttttagtgtaatcagatctctttcgtgtggtataaagccattgccatttaattttttccatttgagcatggtgctga 107  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||    
T  42677017 ccaagaaaatcaaagcgaatatgttttagtgtaatcagatctctttcgtgtggtataaagccattgccatttaattctatccatttgagcatggtgctga 42677116  T
Q  108 ttttttgtcgttggaagctggtcctagccgcaaaccattggagaatacttcccatgttttgtatattgggttgattccacatggcttcaaagagatggag 207  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||    
T  42677117 ttttttgtcgttggaagctggtcctagtcgcaaaccattggagaatacttcccatgttttgtatattggtttgattccacatggcttctaagagatggag 42677216  T
Q  208 atggcggaagcttattttggacaatttggaaccatcaagagattgagaatttccaccagaaaatcaagacatttttgtatcgtagaatttgaatcctgag 307  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  || ||||||||||||||||||    
T  42677217 atggcgaaagcttattttggacaatttggaaccatcaagagattgagaatttccaccagaaaatcaagacatttttggttcatagaatttgaatcctgag 42677316  T
Q  308 gtagcaaaattgttgccgatactatgcacaattatttgctttgtgaacacatatatactacatgttttcgtggtaccttcagaacatgttcacgccatgt 407  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42677317 gtagcaaaattgttgccgatactatgcacaattatttgctttttgaacacatatatactacatgttttcgtggtaccttcagaacatgttcacgccatgt 42677416  T
Q  408 ttgttttttaagtgtttgtaccgattctattatgaaccacgctagccatcaattgaaaaatattgtaaggggaggttaattcatacagctttgtctaa 505  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42677417 ttgttttttaagtgtttgtaccgattctattgtgaaccacgctagccatcaattgaaaaatattgtaaggggaggttaattcatacagctttgtctaa 42677514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 266 - 357
Target Start/End: Original strand, 52835029 - 52835123
Alignment:
Q  266 gaaaatcaagacatttttgtatcgtagaatttgaatc--ctgaggtagcaaaa-ttgttgccgatactatgcacaattatttgctttgtgaacac 357  Q
    ||||||||||||||||| |  || |||||||||||||  |||||||||||||| ||||||| ||||||||||||||||||||||| | |||||||    
T  52835029 gaaaatcaagacattttggcttcatagaatttgaatctcctgaggtagcaaaaattgttgctgatactatgcacaattatttgctctttgaacac 52835123  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 522 - 555
Target Start/End: Original strand, 42677520 - 42677553
Alignment:
Q  522 atgtgacggtgagttttgtttgtggtgatgatgt 555  Q
    ||||||||||||||||||||||||||||||||||    
T  42677520 atgtgacggtgagttttgtttgtggtgatgatgt 42677553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 216 - 258
Target Start/End: Original strand, 52834967 - 52835009
Alignment:
Q  216 agcttattttggacaatttggaaccatcaagagattgagaatt 258  Q
    |||||||||||||||||| || ||| |||||||||||||||||    
T  52834967 agcttattttggacaattcggtaccgtcaagagattgagaatt 52835009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 2e-19; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 313 - 399
Target Start/End: Complemental strand, 48968887 - 48968805
Alignment:
Q  313 aaaattgttgccgatactatgcacaattatttgctttgtgaacacatatatactacatgttttcgtggtaccttcagaacatgttca 399  Q
    ||||||||||| ||||||||||||||||||||||||| |||||||     ||||||| ||||| |||||||||||||||||||||||    
T  48968887 aaaattgttgctgatactatgcacaattatttgctttttgaacac----ctactacaggtttttgtggtaccttcagaacatgttca 48968805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 216 - 262
Target Start/End: Complemental strand, 48969581 - 48969535
Alignment:
Q  216 agcttattttggacaatttggaaccatcaagagattgagaatttcca 262  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  48969581 agcttattttggacaatttggaaccatcaagagattgagaatttcca 48969535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 139 - 211
Target Start/End: Complemental strand, 48969784 - 48969712
Alignment:
Q  139 aaaccattggagaatacttcccatgttttgtatattgggttgattccacatggcttcaaagagatggagatgg 211  Q
    |||| |||||||||| |||||| |||||||||||||||   |||||||||||||||| | |||| ||||||||    
T  48969784 aaacaattggagaattcttcccctgttttgtatattggtcggattccacatggcttctatgagaaggagatgg 48969712  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 522 - 555
Target Start/End: Complemental strand, 15496130 - 15496097
Alignment:
Q  522 atgtgacggtgagttttgtttgtggtgatgatgt 555  Q
    ||||| ||||||||||||||||||||||||||||    
T  15496130 atgtggcggtgagttttgtttgtggtgatgatgt 15496097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 522 - 555
Target Start/End: Complemental strand, 6705752 - 6705719
Alignment:
Q  522 atgtgacggtgagttttgtttgtggtgatgatgt 555  Q
    ||||| ||||||||||||||||||||||||||||    
T  6705752 atgtggcggtgagttttgtttgtggtgatgatgt 6705719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 522 - 555
Target Start/End: Complemental strand, 40900436 - 40900403
Alignment:
Q  522 atgtgacggtgagttttgtttgtggtgatgatgt 555  Q
    ||||| ||||||||||||||||||||||||||||    
T  40900436 atgtggcggtgagttttgtttgtggtgatgatgt 40900403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 446 - 494
Target Start/End: Complemental strand, 40900512 - 40900464
Alignment:
Q  446 acgctagccatcaattgaaaaatattgtaaggggaggttaattcataca 494  Q
    |||||||||||||||||  |||||||| || |||||||| |||||||||    
T  40900512 acgctagccatcaattgggaaatattgcaaagggaggttcattcataca 40900464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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