View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17555_low_3 (Length: 431)
Name: NF17555_low_3
Description: NF17555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17555_low_3 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 370; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 8 - 431
Target Start/End: Complemental strand, 51979365 - 51978945
Alignment:
| Q |
8 |
gacatcatcaaacctgaagattcacaaatctggtaattgggatcttttttgagagaatgcgaacatcatgctgaatgggctcataaattaacttccattt |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51979365 |
gacatcatcaaacctgaagattcacaaatctggtaattgggatcttttttgagagaatgcgaacatcatgctgaatgggctcataaattaacttccattt |
51979266 |
T |
|
| Q |
108 |
ccattcaggtgtcaaaggtttaaatacaagctttgcttgacattcattgatcggagcattgtagatctgcacacacaaaattgatctcctgaatatgtag |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51979265 |
ccattcaggtgtcaaaggtttaaatacaagctttgcttgacattcattgatcggagcattgtagatctgcacacacaaaattgatctcctgaatatgtag |
51979166 |
T |
|
| Q |
208 |
taatcatcatgtgaaaacaattgtctagaagaagnnnnnnnnctcacaacattaacctatttggatgtgaagacatccaaatatagaaatgcttaaattt |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||| |||| | ||||||||||||||||||||||||||||||||| |
|
|
| T |
51979165 |
taatcatcatgtgaaaacaattgtctagaagaagaaaaaaaactcacaacattaacttatt---aactgaagacatccaaatatagaaatgcttaaattt |
51979069 |
T |
|
| Q |
308 |
catagagcatcattccttttaattaagaattctcattgaaaattcttgtatccgtagaacagacgagtttaatcacatagacaggataaaaagacaacat |
407 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
51979068 |
catagagcatcattccttttaattaagaattctcattgaaaattcttgtatccgtagaacagatgagtttaatcacatagacaggataaaaagacaacat |
51978969 |
T |
|
| Q |
408 |
ctaaccataccaccgtagtgcgat |
431 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
51978968 |
ctaaccataccaccgtagtgcgat |
51978945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University