View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17555_low_6 (Length: 378)
Name: NF17555_low_6
Description: NF17555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17555_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 349; Significance: 0; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 1 - 364
Target Start/End: Original strand, 39846003 - 39846367
Alignment:
| Q |
1 |
tactgtaaggtaacgataatcatgattgataatattaaaatggaatgatggtaagctaaagtggcatcgaagtaaaatgtttgtgaccaaaaacggccaa |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| |
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| T |
39846003 |
tactgtaaggtaacgataatcatgattgataatattaaaatggaatgatggtaagctaaagtggcatcgaagtaaaatgtttgtgagccaaaacggccaa |
39846102 |
T |
|
| Q |
101 |
gcaaatacatgaatcaaa-tggagggattgccctcaaggttttgtagaccttctcatgaccttccaattcagtttcggcctccggaatttgatcagcaat |
199 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39846103 |
gcaaatacatgaatcaaaatggagggattgccctcaaggttttgtagaccttctcatgaccttccaattcagtttcggcctccggaatttgatcagcaat |
39846202 |
T |
|
| Q |
200 |
tttcaacttgacttgatcaatagcgaggcgatggaaaattgatttaacttctttgttaagagacgtgatcttagctttctcttgagcttcaatctcaaca |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39846203 |
tttcaacttgacttgatcaatagcgaggcgatggaaaattgatttaacttctttgttaagagacgtgatcttagctttctcttgagcttcaatctcaaca |
39846302 |
T |
|
| Q |
300 |
attttggctctttccccttgtagtttttcaagcatggctttaagatcagcaatctgagtatcaag |
364 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39846303 |
attttggctctttccccttgtagtttttcaagcatggctttaagatcagcaatctgagtatcaag |
39846367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 95 - 364
Target Start/End: Original strand, 39863011 - 39863284
Alignment:
| Q |
95 |
ggccaagcaaatacatgaatcaaa-tggagggattgccctcaaggttttgtagaccttctcatgaccttccaattcagtttcggcctccggaatttgatc |
193 |
Q |
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||||||||||||||| ||||||| ||||||||||||||| ||| || |||||||||||||||||| |||||||||||||| |||||||| |||| ||| |
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| T |
39863011 |
ggccaagcaaatacacaaatcaaaatggagggattgccctgaagattctgtagaccttctcatgactttccaattcagtttgcgcctccgggattttatc |
39863110 |
T |
|
| Q |
194 |
agcaa---ttttcaacttgacttgatcaatagcgaggcgatggaaaattgatttaacttctttgttaagagacgtgatcttagctttctcttgagcttca |
290 |
Q |
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||| ||||||| |||| ||||||| |||| |||||||||||||||||||||||||||||||||| ||| ||||||||| ||||||||||| ||||| |
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| T |
39863111 |
ttcaacacttttcaatttgatttgatcattagcaaggcgatggaaaattgatttaacttctttgttaaaagatgtgatcttatctttctcttgatcttca |
39863210 |
T |
|
| Q |
291 |
atctcaacaattttggctctttccccttgtagtttttcaagcatggctttaagatcagcaatctgagtatcaag |
364 |
Q |
| |
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|||||| ||||||||||||| || |||||||||||||||||| ||||||||||||||||||| |||| |||||| |
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| T |
39863211 |
atctcatcaattttggctctgtcaccttgtagtttttcaagcttggctttaagatcagcaatttgagcatcaag |
39863284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 1 - 353
Target Start/End: Original strand, 39855719 - 39856074
Alignment:
| Q |
1 |
tactgtaaggtaacgataatcatgattgataatattaaaatggaatgatggtaagctaaagtggcatcgaagtaaaatgtttgtgaccaaaaacggccaa |
100 |
Q |
| |
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|||| ||||||| | |||||||||||||||| |||||||||||||||| |||| |||||| |||||||||||| ||| ||||||||||||||| |||||| |
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| T |
39855719 |
tactataaggtaccaataatcatgattgatagtattaaaatggaatgaaggtaggctaaaatggcatcgaagtgaaacgtttgtgaccaaaaa-ggccaa |
39855817 |
T |
|
| Q |
101 |
gcaaatacatgaatc-aaatggagggattgccctcaaggttttgtagaccttctcatgaccttccaattcagtttcggcctccggaatttgatcagcaa- |
198 |
Q |
| |
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| || ||||| |||| ||||||||| ||| |||||| ||| ||||||||||||||| | |||||||||||||| |||||| | |||| ||| ||| |
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| T |
39855818 |
gtaagtacattaatcaaaatggaggcattaccctcattatttggtagaccttctcatgcctttccaattcagtttgtgcctccaggattttatcttcaac |
39855917 |
T |
|
| Q |
199 |
--ttttcaacttgacttgatcaatagcgaggcgatggaaaattgatttaacttctttgttaagagacgtgatcttagctttctcttgagcttcaatctca |
296 |
Q |
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| |||||||||| ||||||| |||||||||||||||||||||||||||||| ||||||| ||| ||||||||| ||||||||||| ||| ||||||| |
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| T |
39855918 |
gctcttcaacttgatttgatcatcagcgaggcgatggaaaattgatttaacttcattgttaaaagatgtgatcttatctttctcttgatcttgaatctca |
39856017 |
T |
|
| Q |
297 |
acaattttggctctttccccttgtagtttttcaagcatggctttaagatcagcaatc |
353 |
Q |
| |
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| ||||| || | || |||||||||||||||||| ||||||| | |||||||||| |
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|
| T |
39856018 |
gccattttagcccggtcgccttgtagtttttcaagcttggctttgatatcagcaatc |
39856074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 199 - 364
Target Start/End: Complemental strand, 38981025 - 38980857
Alignment:
| Q |
199 |
ttttcaacttgacttgatcaatagcgaggcgatggaaaattgatttaacttctttgttaagagacgtgatcttagctttctcttgagcttcaatctcaac |
298 |
Q |
| |
|
||||||| |||| ||||||| |||||||||||||||||||||||||||||||||||| | ||| | ||||||| ||||||||| | ||| | |||| |
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| T |
38981025 |
ttttcaatttgatttgatcatcagcgaggcgatggaaaattgatttaacttctttgtttaaagatgcgatcttatctttctctttatcttgaccctcagt |
38980926 |
T |
|
| Q |
299 |
aattttggctctttccccttgtagtttttcaagcatggc---tttaagatcagcaatctgagtatcaag |
364 |
Q |
| |
|
|| |||||| || || ||||||||||||||||| |||| ||||||||||||||||||| |||||| |
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| T |
38980925 |
aactttggccctctcaacttgtagtttttcaagcttggcattattaagatcagcaatctgagcatcaag |
38980857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 207 - 364
Target Start/End: Original strand, 39909948 - 39910100
Alignment:
| Q |
207 |
ttgacttgatcaatagcgaggcgatggaaaattgatttaacttctttgttaagagacgtgatcttagctttctcttgagcttcaatctcaacaattttgg |
306 |
Q |
| |
|
|||| ||||||| || ||||||||||||||||||||||||||||||||| | ||| | |||| || ||||||||||| ||| ||||| ||| || | |
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| T |
39909948 |
ttgatttgatcatcagagaggcgatggaaaattgatttaacttctttgttcaaagatgcgatcctatctttctcttgatcttgaatcttaacgatgat-- |
39910045 |
T |
|
| Q |
307 |
ctctttccccttgtagtttttcaagcatggctttaagatcagcaatctgagtatcaag |
364 |
Q |
| |
|
| || |||||||||||||||||| |||| ||||||||||||||||||| |||||| |
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| T |
39910046 |
---tgtcaccttgtagtttttcaagcttggcattaagatcagcaatctgagcatcaag |
39910100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 89 - 326
Target Start/End: Complemental strand, 39738270 - 39738028
Alignment:
| Q |
89 |
aaaaacggccaagcaaatacatgaatcaaa-tggagggattgccctcaaggttttgtagaccttctcatgaccttccaattcagtttcggcctccggaat |
187 |
Q |
| |
|
||||| ||| || ||||||||| ||||||| |||||||||| | | ||| ||| ||| |||||||| |||||||||||||| || | |||||||| |
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|
| T |
39738270 |
aaaaaaggctaaccaaatacataaatcaaaatggagggattttcttgaagatttgaaagagcttctcataaccttccaattcagattgagtttccggaat |
39738171 |
T |
|
| Q |
188 |
ttgatc----agcaattttcaacttgacttgatcaatagcgaggcgatggaaaattgatttaacttctttgttaagagacgtgatcttagctttctcttg |
283 |
Q |
| |
|
|||||| | || |||||||||||| ||||||| | ||||| | ||||||||||| ||||| ||||| || | ||| || |||||| |||||||||| |
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|
| T |
39738170 |
ttgatcttccaacacttttcaacttgatttgatcatcaacgaggtgctggaaaattgacttaacatctttattcaaagatgtaatcttatctttctcttg |
39738071 |
T |
|
| Q |
284 |
agcttcaatctcaacaattttggctctttccccttgtagtttt |
326 |
Q |
| |
|
| ||| ||||||| |||||||||| || || ||||||||||| |
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|
| T |
39738070 |
atcttgaatctcagcaattttggccctgtcttcttgtagtttt |
39738028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 245 - 332
Target Start/End: Complemental strand, 53495721 - 53495634
Alignment:
| Q |
245 |
aacttctttgttaagagacgtgatcttagctttctcttgagcttcaatctcaacaattttggctctttccccttgtagtttttcaagc |
332 |
Q |
| |
|
|||||||||||| | ||| ||||||||| |||| |||||| ||| |||| || | | |||||| ||||| |||||||||||||||||| |
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|
| T |
53495721 |
aacttctttgttcaaagatgtgatcttatctttttcttgatcttgaatcacagccagtttggccctttcaccttgtagtttttcaagc |
53495634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 123 - 181
Target Start/End: Complemental strand, 53495836 - 53495778
Alignment:
| Q |
123 |
gggattgccctcaaggttttgtagaccttctcatgaccttccaattcagtttcggcctc |
181 |
Q |
| |
|
||||||||||| ||| || ||||||||||||| |||| |||||||| |||||||||||| |
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|
| T |
53495836 |
gggattgccctgaagattctgtagaccttctcgtgactttccaatttagtttcggcctc |
53495778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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