View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17555_low_7 (Length: 306)
Name: NF17555_low_7
Description: NF17555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17555_low_7 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 11 - 290
Target Start/End: Complemental strand, 33532004 - 33531725
Alignment:
| Q |
11 |
tccaataatatccctcaaagccctatacacaatccccgcctgcttcgaacacccaaacatcgtatgactcttaccagaaccagttggtccatacatcata |
110 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33532004 |
tccaagaatatccctcaaagccctatacacaatccccgcctgcttcgaacacccaaacatcgtatgactcttaccagaaccagttggtccatacatcata |
33531905 |
T |
|
| Q |
111 |
atagtacatttatcccccaatttcacaccattaatccttgattccacaaatttcttgtagaacaagtccaattcttcttcctcagaaacagacaccccat |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33531904 |
atagtacatttatcccccaatttcacaccattaatccttgattccacaaatttcttgtagaacaagtccaattcttcttcctcagaaacagacaccccat |
33531805 |
T |
|
| Q |
211 |
caagagtaaaatctctataaccaaaatcagccttcacccttatagatctagagttagaacttgcttgtaaaacagataaa |
290 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
33531804 |
caagagtaaaatctctataaccaaaatcagccttcacccttatagatctagaattagaacttgcttgtaaaacagataaa |
33531725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University