View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17555_low_8 (Length: 274)
Name: NF17555_low_8
Description: NF17555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17555_low_8 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 4 - 267
Target Start/End: Original strand, 37834968 - 37835221
Alignment:
| Q |
4 |
agggccctacgcttaaagagaaaagtacaacgaataacatcctccaccagactacatgatatagcacgtatgacaaagattttctattcaatgaacaact |
103 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
37834968 |
agggccctacgcttaaagagaaaagtacaacgaataacatcctccaccagactacatgatatagcacgtatgacaaagattttttattcaatgaacaact |
37835067 |
T |
|
| Q |
104 |
ttaacatgatatgtcaattaaaaactgtaaaaacaatatcacaaagttatacaaacaagatgaaaattgaatgaactagataaaataggaggaacacata |
203 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37835068 |
ttaacatgatatgtcaattaaaaactgtaaaaacaatatcacaaagttatacaaacaagatgaaaattgaatgaactagataaaataggaggaacac--- |
37835164 |
T |
|
| Q |
204 |
taaggtttaagacactgcttgttcaaagtagaacaatatcattcatcagctcccaaagctgtcc |
267 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37835165 |
-------taagacactgcttgttcaaagtagaacaatatcattcatcagctcccaaagctgtcc |
37835221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 30 - 267
Target Start/End: Original strand, 12280991 - 12281228
Alignment:
| Q |
30 |
acaacgaataacatcctccaccagactacatgatatagcacgtatgacaaagattttctattcaatgaacaactttaacatgatatgtcaattaaaaact |
129 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12280991 |
acaacggataacatcctccaccagactacatgatatagcatgtatgacaaagattttctattcaatgaacaactttaacatgatatgtcaattaaaaact |
12281090 |
T |
|
| Q |
130 |
gtaaaaacaatatcacaaagttatacaaacaagatgaaaattgaatgaactagataaaataggaggaacacatataaggtttaagacactgcttgttcaa |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
12281091 |
gtaaaaacaatatcacaaagttatacaaacaagatgaaaattaaatgaactagataaaataggaggaacacatataaggtttaagacattgcttgttcaa |
12281190 |
T |
|
| Q |
230 |
agtagaacaatatcattcatcagctcccaaagctgtcc |
267 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12281191 |
agtagaacaatatcattcatcagctcccaaagctgtcc |
12281228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University